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Apis mellifera
cluster # 654 cluster # 654       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_654#0 length = 597 sequences # 1  
consensus_654#1 length = 593 sequences # 2  

consensusID : consensus_654#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence
                              [CCTGTGAGCGCGAGAATAATAGTCCAACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTTCCCAACTTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAATGATCAGAATTAAAGAATTTTTTTTCGATTAAACTATTAATTATTTGGAATGATATCGACAAATGGAATTTTCATAATTTTAAGTAACCATTAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAAATGGAAACGTAAATTTTCAATCAAATTTTTATT]

[+] EMBL BI509685             [CCTGTGAGCGCGAGAATAATAGTCCAACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTTCCCAACTTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAATGATCAGAATTAAAGAATTTTTTTTCGATTAAACTATTAATTATTTGGAATGATATCGACAAATGGAATTTTCATAATTTTAAGTAACCATTAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAAATGGAAACGTAAATTTTCAATCAAATTTTTATT]


>consensus_654#0 CCTGTGAGCGCGAGAATAATAGTCCAACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGA GGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTTCCCAAC TTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTT ATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCA GGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAG GTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGA GAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAA ATTCAATGATCAGAATTAAAGAATTTTTTTTCGATTAAACTATTAATTATTTGGAATGAT ATCGACAAATGGAATTTTCATAATTTTAAGTAACCATTAATTTTATCATTTTGATAAAAA AAAAATCGTTATAGGAATAATAAAATGGAAACGTAAATTTTCAATCAAATTTTTATT



consensusID : consensus_654#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 593
fasta sequence
                              [GAGACGACAGGAAGAGGCGAGGTTGAACGCGTTGCCTGTGAGCGCGAGAATAATAGTCCAACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTCCCCAACTTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAACGATCAGAATTAAAGAATTTTTTTTCGATTAATTTGGAACGATATATCAACAAATGGAATTTTCAAAATTTTAAGTAACCGTCAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAAATGG]

[+] EMBL BI515006             [GAGACGACAGGAAGAGGCGAGGTTGAACGCGTTGCCTGTGAGCGCGAGAATAATAGTCCAACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTCCCCAACTTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAACGATCAGAATTAAAGAATTTTTTTTCGATTAATTTGGAACGATATATCAACAAATGG                                                                            ]
[+] EMBL BI512550             [                                                                                          AGGAGGGATCGATATCGATTTCCTGGGAGCTAATCCATTCCAAGGTGGAGTACGTTTCCCCAACTTCCCAGCCCCACCCACTCGACGACCTGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACGTCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTGCAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGAGGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCATTTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAACGATCAGAATTAAAGAATTTTTTTTCGATTAATTTGGAACGATATATCAACAAATGGAATTTTCAAAATTTTAAGTAACCGTCAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAAATGG]


>consensus_654#1 GAGACGACAGGAAGAGGCGAGGTTGAACGCGTTGCCTGTGAGCGCGAGAATAATAGTCCA ACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGC TAATCCATTCCAAGGTGGAGTACGTTTCCCCAACTTCCCAGCCCCACCCACTCGACGACC TGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACG TCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTG CAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGA GGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCAT TTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAACGATCAGAATTAAAGAATTT TTTTTCGATTAATTTGGAACGATATATCAACAAATGGAATTTTCAAAATTTTAAGTAACC GTCAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAAATGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_654#0      ----------------------------------CCTGTGAGCGCGAGAATAATAGTCCA 26
consensus_654#1      GAGACGACAGGAAGAGGCGAGGTTGAACGCGTTGCCTGTGAGCGCGAGAATAATAGTCCA 60
                                                       **************************

consensus_654#0      ACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGC 86
consensus_654#1      ACCTCAGAAGCCTAGGCTTGTATCGAGGATAGGAGGGATCGATATCGATTTCCTGGGAGC 120
                     ************************************************************

consensus_654#0      TAATCCATTCCAAGGTGGAGTACGTTTTCCCAACTTCCCAGCCCCACCCACTCGACGACC 146
consensus_654#1      TAATCCATTCCAAGGTGGAGTACGTTTCCCCAACTTCCCAGCCCCACCCACTCGACGACC 180
                     *************************** ********************************

consensus_654#0      TGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACG 206
consensus_654#1      TGTGCAAAGTCCTCCGCCCTGCGTCTGGGCTGTTATCCAATGTTGTCCATCGAATCAACG 240
                     ************************************************************

consensus_654#0      TCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTG 266
consensus_654#1      TCTGGTCACATGTTTCGAGTCGTTGGGCTGTCCAGGTGTCAATTGGGATTCTAATCCTTG 300
                     ************************************************************

consensus_654#0      CAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGA 326
consensus_654#1      CAGAGATAGCGTCTCTCAAGCAGCTAGGGCACAGGTGGAGAAATTCTACAGGGAAACCGA 360
                     ************************************************************

consensus_654#0      GGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCAT 386
consensus_654#1      GGACGAGGAGGAACGTTATTGAAAGGGGAACCGAGAAATATGTAGATTGGTAGATTCCAT 420
                     ************************************************************

consensus_654#0      TTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAATGATCAGAATTAAAGAATTT 446
consensus_654#1      TTTTTTAGTATATTTTGATGAGTGGGGTCGAAAAATTCAACGATCAGAATTAAAGAATTT 480
                     **************************************** *******************

consensus_654#0      TTTTTCGATTAAACTATTAATTATTTGGAATGATAT--CGACAAATGGAATTTTCATAAT 504
consensus_654#1      TTTTTCGATTAA-----------TTTGGAACGATATATCAACAAATGGAATTTTCAAAAT 529
                     ************           ******* *****  * **************** ***

consensus_654#0      TTTAAGTAACCATTAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAA 564
consensus_654#1      TTTAAGTAACCGTCAATTTTATCATTTTGATAAAAAAAAAATCGTTATAGGAATAATAAA 589
                     *********** * **********************************************

consensus_654#0      ATGGAAACGTAAATTTTCAATCAAATTTTTATT 597
consensus_654#1      ATGG----------------------------- 593
                     ****                             




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)