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Apis mellifera
cluster # 660 cluster # 660       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_660#0 length = 530 sequences # 1  
 consensus_660#1 length = 334 sequences # 2  
consensusID : consensus_660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence 
                              [ACTGAAATATTTATCGATTCGGTTTACGTTATTAAGAAAAAATAAGGAGAGAGGGATACGAAAAGGGAACAGGGTTTTTTTTACCGCGGATAACAATTAACGGACCAGTAAAATCGACCTTCTTGAAATGCCGATCGGGGAGTTCCTTCCGAGTTCGACAAAGAGGAGCGCACCCCTATTATACGTTGTAAGCCTTACCTTGTCGAATCAATGTGACTTATCGCTAAATAGTAGTCTTACGACGGCGTAGTCTGTCGATCTTTCCGCGAGGAAAGTTTGATCGACTCCATTCCGTTCTCTCAACTTTATCGATACTTTATCGATCAATGGATGAAATCTTCTGCGAAACTACGCAGGATTATTTATTAGAGAAAAAGATATAAATTTACGTTAATTGGACGAAAGGGAAACATTGGGAAAAATTGAAAGAGAAAATTAATTAATTTCTCTTCGCGAGTATCGATAAAGTTATGGAAACGGATAACGTATTCGAATTAAAGAGTACATTTACGTTTTCTTACTATTATTCT]

[+] EMBL BI511797             [ACTGAAATATTTATCGATTCGGTTTACGTTATTAAGAAAAAATAAGGAGAGAGGGATACGAAAAGGGAACAGGGTTTTTTTTACCGCGGATAACAATTAACGGACCAGTAAAATCGACCTTCTTGAAATGCCGATCGGGGAGTTCCTTCCGAGTTCGACAAAGAGGAGCGCACCCCTATTATACGTTGTAAGCCTTACCTTGTCGAATCAATGTGACTTATCGCTAAATAGTAGTCTTACGACGGCGTAGTCTGTCGATCTTTCCGCGAGGAAAGTTTGATCGACTCCATTCCGTTCTCTCAACTTTATCGATACTTTATCGATCAATGGATGAAATCTTCTGCGAAACTACGCAGGATTATTTATTAGAGAAAAAGATATAAATTTACGTTAATTGGACGAAAGGGAAACATTGGGAAAAATTGAAAGAGAAAATTAATTAATTTCTCTTCGCGAGTATCGATAAAGTTATGGAAACGGATAACGTATTCGAATTAAAGAGTACATTTACGTTTTCTTACTATTATTCT]




>consensus_660#0
ACTGAAATATTTATCGATTCGGTTTACGTTATTAAGAAAAAATAAGGAGAGAGGGATACG
AAAAGGGAACAGGGTTTTTTTTACCGCGGATAACAATTAACGGACCAGTAAAATCGACCT
TCTTGAAATGCCGATCGGGGAGTTCCTTCCGAGTTCGACAAAGAGGAGCGCACCCCTATT
ATACGTTGTAAGCCTTACCTTGTCGAATCAATGTGACTTATCGCTAAATAGTAGTCTTAC
GACGGCGTAGTCTGTCGATCTTTCCGCGAGGAAAGTTTGATCGACTCCATTCCGTTCTCT
CAACTTTATCGATACTTTATCGATCAATGGATGAAATCTTCTGCGAAACTACGCAGGATT
ATTTATTAGAGAAAAAGATATAAATTTACGTTAATTGGACGAAAGGGAAACATTGGGAAA
AATTGAAAGAGAAAATTAATTAATTTCTCTTCGCGAGTATCGATAAAGTTATGGAAACGG
ATAACGTATTCGAATTAAAGAGTACATTTACGTTTTCTTACTATTATTCT

consensusID : consensus_660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 334
fasta sequence 
                              [GTACGTATAAGATCATTAAGGTAAAAATCGATAGATTATTGAGTCTGTTTAATTGATTACAGTGGGCTAGTCTAATAAATAAACAAAAAAAAAAAAAAAATAAAATAAAAATAAAAATAAAAAATAAAAATGTCACGTAATCTTAAAACGATCTTGCCTCGAGGCTGCTCGTTATACACACACACCCACGCATACACACACACACACACATACACTCTCTCTCTTTCTCTCTCTCTTTACAATAGCGAACAACGGTAAATACAGTACTANNNATAATAGTAAGAAAACGTAAATGTACTCTTTAATTCGAATACGTTATCCGTTTCCATAACTT]

[+] EMBL BI512820             [GTACGTATAAGATCATTAAGGTAAAAATCGATAGATTATTGAGTCTGTTTAATTGATTACAGTGGGCTAGTCTAATAAATAAACAAAAAAAAAAAAAAAATAAAATAAAAATAAAAATAAAAAATAAAAATGTCACGTAATCTTAAAACGATCTTGCCTCGAGGCTGCTCGTTATACACACACACCTACGCATACACACACACACACAC  ACTCTCTCTCTCTTTCTCTCTCTCTTTACAATAGCGAACAACGGTAAATACAGTACTANNNATAATAGTAAGAAAACGTAAATGTACTCTTTAATTCGAATACGTTATCCGTTTCCATAACTT]
[+] EMBL BI513675             [              ATTAAGGTAAAAATCGATAGATTATTGAGTCTGTTTAATTGATTACAGTGGGCTAGTCTAATAAATAAAC AAAAAAAAAAAAAAATAAAATAAAAATAAAAATAAAAAATAAAAATGTCACGTAATCTTAAAACGATCTTGCCTCGAGGCTGCTCGTTATACACACACACCCACGCATACACACACACACACACATACACTCTCTCTCTTTCTCTCTCTCTTTACAATAGCGAACAACGGTAAATACAGTACTAAGAATAATAGTAAGAAAACGTAAATGTACTCTTTAATTCGAATACGTTATCCGTTTCCATAACT ]




>consensus_660#1
GTACGTATAAGATCATTAAGGTAAAAATCGATAGATTATTGAGTCTGTTTAATTGATTAC
AGTGGGCTAGTCTAATAAATAAACAAAAAAAAAAAAAAAATAAAATAAAAATAAAAATAA
AAAATAAAAATGTCACGTAATCTTAAAACGATCTTGCCTCGAGGCTGCTCGTTATACACA
CACACCCACGCATACACACACACACACACATACACTCTCTCTCTTTCTCTCTCTCTTTAC
AATAGCGAACAACGGTAAATACAGTACTANNNATAATAGTAAGAAAACGTAAATGTACTC
TTTAATTCGAATACGTTATCCGTTTCCATAACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_660#0      ACTGAAATATTTATCGATTCGGTTTACGTTATTAAGAAAAAATAAGGAGAGAGGGATACG 60
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      AAAAGGGAACAGGGTTTTTTTTACCGCGGATAACAATTAACGGACCAGTAAAATCGACCT 120
consensus_660#1      --------GTACGTATAAGATCATTA-AGGTAAAAATCGATAGATTA------TTGAGTC 45
                               * *  *    * *     * *** ***  *  **  *      * **   

consensus_660#0      TCTTGAAATGCCGATCGGGGAGTTCCTTCCGAGTTCGACAAAGAGGAGCGCACCCCTATT 180
consensus_660#1      TGTTTAATTGATTACAGTGGGCTAGTCTAATAAATAAACAAAAAAAAAAAAA-------- 97
                     * ** ** **   *  * **  *    *   *  *  ***** *  *    *        

consensus_660#0      ATACGTTGTAAGCCTTACCTTGTCGAATCAATGTGACTTATCGCTAAATAGTAGTCTTAC 240
consensus_660#1      AAATAAAATAAAAATAAAAATAAAAAATAAAAATGTCACGTAATCTTAAAACGATCTTGC 157
                     * *     ***   * *   *    *** **  ** *   *      * *    **** *

consensus_660#0      GACGGCGTAGTCTGTCGATCTTTC---CGCGAGGAAAGTTTGATCGACTCCATTCCGTTC 297
consensus_660#1      CTCGAGGCTGCTCGTTATACACACACACCCACGCATACACACACACACACACATACACTC 217
                       **  *  *   **    *   *   * *  * * *     *   ** *   * *  **

consensus_660#0      TCTCAACTTTATCGATACTTTATCGATCAATGGATGAAATCTTCTGCGAAACTACGCAGG 357
consensus_660#1      TCTCT-CTTTCTCTCTCTCTTTACAAT-AGCGAACAACGGTAAATACAGTACTANNNATA 275
                     ****  **** **  *   **  * ** *  * *  *       * *   ****   *  

consensus_660#0      ATTATTTATTAGAGAAAAAGATATAAATTTACGTTAATTGGACGAAAGGGAAACATTGGG 417
consensus_660#1      ATAGT-------AAGAAAACGTAAATGTACTCTTTAATTCGA-ATACGTTATCCGTTTCC 327
                     **  *       *  ****  ** *  *   * ****** **   * *  *  * **   

consensus_660#0      AAAAATTGAAAGAGAAAATTAATTAATTTCTCTTCGCGAGTATCGATAAAGTTATGGAAA 477
consensus_660#1      ATAACTT----------------------------------------------------- 334
                     * ** **                                                     

consensus_660#0      CGGATAACGTATTCGAATTAAAGAGTACATTTACGTTTTCTTACTATTATTCT 530
consensus_660#1      -----------------------------------------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)