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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 505 fasta sequence
[ATAAAAGGGGTTGGCTTAGGGTCCGGTCTCTGAGTCGTTACCTCCTGGTGGAGGATTACCTGCAGGTAGAGCCGGTTGTGATTCCGGCAGTGCACGAGGTGCGAACAGCCACGGGGATACTGGAGCCGTGGCACGACGGATAGCCAGAGCACTCGAGAGAGTGGAGAATCGCGGGAGAGCCAGGGAGAGACAGAGACAGGTAGAGCCTTACTGGCGGTGAAATACGAAGCGGGAAAGAGAGGGAGAAGCTTGAGGCAGGCGCGCGTATTGATTCCCGCGTGACGTTTATATGGTGAGGTGAGAAAGCTGCAACCTGAAGAGTCGTGCCATTTCCTTCGTCGCTAAAAAACTGAACGGGGAAGACACGGACTCAAGCAACAACTTGGGATTCCTCGTTTTTGAGCCGTTTGTCCTTGGTCCACTGGAAGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCTGCTCGAGCAGGGACCCGTTGGCCCTTCGCGC]
[+] EMBL BI511738 [ATAAAAGGGGTTGGCTTAGGGTCCGGTCTCTGAGTCGTTACCTCCTGGTGGAGGATTACCTGCAGGTAGAGCCGGTTGTGATTCCGGCAGTGCACGAGGTGCGAACAGCCACGGGGATACTGGAGCCGTGGCACGACGGATAGCCAGAGCACTCGAGAGAGTGGAGAATCGCGGGAGAGCCAGGGAGAGACAGAGACAGGTAGAGCCTTACTGGCGGTGAAATACGAAGCGGGAAAGAGAGGGAGAAGCTTGAGGCAGGCGCGCGTATTGATTCCCGCGTGACGTTTATATGGTGAGGTGAGAAAGCTGCAACCTGAAGAGTCGTGCCATTTCCTTCGTCGCTAAAAAACTGAACGGGGAAGACACGGACTCAAGCAACAACTTGGGATTCCTCGTTTTTGAGCCGTTTGTCCTTGGTCCACTGGAAGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCTGCTCGAGCAGGGACCCGTTGGCCCTTCGCGC]
[+] EMBL BI515757 [ GGTAGAGCCGGTTGTGATTCCGGCAGTGCACGAGGTGCGAACAGCCACGGGGATACTGGAGCCGTGGCACGACGGATAGCCAGAGCACTCGAGAGAGTGGAGAATCGCGGGAGAGCCAGGGAGAGACAGAGACAGGTAGAGCCTTACTGGCGGTGAAATACGAAGCGGGAAAGAGAGGGAGAAGCTTGAGGCAGGCGCGCGTATTGATTCCCGCGTGACGTTTATATGGTGAGGTGAG ]
consensusID : consensus_667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence
[CCGTGTACGACGTTGTTAAGTTACGCTTGGCGTGAGTCGGTGTAGTTAATCTCACGTGCACGCGCGCGTGTCTCTTCTCGTGAATAACTTTTTTTTTTAGTTCGTATTTTTTTTTTCCTCTTTTTCTTTCCTTTTAACGAGCTTTTATACAAAAATTGCGCCGATCTGTGAGATATCTGGTGAATTGTTGGAACGAGTTGTAGATTGTGTTTGTGAATATCATCTACAAAAATCATCTGCAAAGAATTTTATTTGGCTGAATTTTTTGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCTGCTCGAGCAGGGACCCGTTGGCCCTTCGCGCGAGAAATGATTTTTAGAAGGAAGNGGGCATGACGCACCGAACTCATGCAGTGGCGAAAACAC]
[+] EMBL BI510995 [CCGTGTACGACGTTGTTAAGTTACGCTTGGCGTGAGTCGGTGTAGTTAATCTCACGTGCACGCGCGCGTGTCTCTTCTCGTGAATAACTTTTTTTTTTAGTTCGTATTTTTTTTTTCCTCTTTTTCTTTCCTTTTAACGAGCTTTTATACAAAAATTGCGCCGATCTGTGAGATATCTGGTGAATTGTTGGAACGAGTTGTAGATTGTGTTTGTGAATATCATCTACAAAAATCATCTGCAAAGAATTTTATTTGGCTGAATTTTTTGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCTGCTCGAGCAGGGACCCGTTGGCCCTTCGCGCGAGAAATGATTTTTAGAAGGAAGNGGGCATGACGCACCGAACTCATGCAGTGGCGAAAACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_667#0 ATAAAAGGGGTTGGCTTAGGGTCCGGTCTCTGAGTCGTTACCTCCTGGTGGAGGATTACC 60
consensus_667#1 ------------------------------------------------------------
consensus_667#0 TGCAGGTAGAGCCGGTTGTGATTCCGGCAGTGCACGAGGTGCGAACAGCCACGGGGATAC 120
consensus_667#1 ------------------------------------------------------------
consensus_667#0 TGGAGCCGTGGCACGACGGATAGCCAGAGCACTCGAGAGAGTGGAGAATCGCGGGAGAGC 180
consensus_667#1 --------------------------------------CCGTGTACGA-CGTTGTTAAGT 21
*** * * ** * **
consensus_667#0 CAGGGAGAGACAGAGACAGGTAGAGCCTTACTGGCGGTGAAATACGAAGCGGGAAAGAGA 240
consensus_667#1 TACGCTTGGCGTGAGTC-GGTGTAGTTAATCTCACGTGCACGCGCGC-GTGTCTCTTCTC 79
* * * *** * *** ** ** ** * ** * *
consensus_667#0 GGGAGAAGCTTGAGGCAGGCGCGCGTATTGATTCCCGCGTGACGTTTATATGGTGAGGTG 300
consensus_667#1 GTGAATAACTTTTTTTTTTAGTTCGTATTTTTTTTTTCCTCTTTTTCTTTCCTT----TT 135
* ** * *** * ****** ** * * ** * * *
consensus_667#0 AGAAAGCTGCAACCTGAAGAGTCGTGCCATTTCCTTCGTCG-CTAAAAAACTGAACGGGG 359
consensus_667#1 AACGAGCTTTTATACAAAAA-TTGCGCCGATCTGTGAGATATCTGGTGAATTGTTGGAAC 194
* **** * ** * * * *** * * * ** ** ** *
consensus_667#0 AAGACACGGACTCAAGCAACAACTTGGGATTCC-----TCGTTTTTGAGCCGTTTGTCCT 414
consensus_667#1 GAGTTGTAGATTGTGTTTGTGAATATCATCTACAAAAATCATCTGCAAAGAATTTTATTT 254
** ** * * * * * ** * * * *** *
consensus_667#0 TGGTCCACTGGAAGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCT 474
consensus_667#1 GGCTGAATTTTTTGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCT 314
* * * * ***********************************************
consensus_667#0 GCTCGAGCAGGGACCCGTTGGCCCTTCGCGC----------------------------- 505
consensus_667#1 GCTCGAGCAGGGACCCGTTGGCCCTTCGCGCGAGAAATGATTTTTAGAAGGAAGNGGGCA 374
*******************************
consensus_667#0 ---------------------------------
consensus_667#1 TGACGCACCGAACTCATGCAGTGGCGAAAACAC 407
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |