These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 505 fasta sequence [ATAAAAGGGGTTGGCTTAGGGTCCGGTCTCTGAGTCGTTACCTCCTGGTGGAGGATTACCTGCAGGTAGAGCCGGTTGTGATTCCGGCAGTGCACGAGGTGCGAACAGCCACGGGGATACTGGAGCCGTGGCACGACGGATAGCCAGAGCACTCGAGAGAGTGGAGAATCGCGGGAGAGCCAGGGAGAGACAGAGACAGGTAGAGCCTTACTGGCGGTGAAATACGAAGCGGGAAAGAGAGGGAGAAGCTTGAGGCAGGCGCGCGTATTGATTCCCGCGTGACGTTTATATGGTGAGGTGAGAAAGCTGCAACCTGAAGAGTCGTGCCATTTCCTTCGTCGCTAAAAAACTGAACGGGGAAGACACGGACTCAAGCAACAACTTGGGATTCCTCGTTTTTGAGCCGTTTGTCCTTGGTCCACTGGAAGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCTGCTCGAGCAGGGACCCGTTGGCCCTTCGCGC] [+] EMBL BI511738 [ATAAAAGGGGTTGGCTTAGGGTCCGGTCTCTGAGTCGTTACCTCCTGGTGGAGGATTACCTGCAGGTAGAGCCGGTTGTGATTCCGGCAGTGCACGAGGTGCGAACAGCCACGGGGATACTGGAGCCGTGGCACGACGGATAGCCAGAGCACTCGAGAGAGTGGAGAATCGCGGGAGAGCCAGGGAGAGACAGAGACAGGTAGAGCCTTACTGGCGGTGAAATACGAAGCGGGAAAGAGAGGGAGAAGCTTGAGGCAGGCGCGCGTATTGATTCCCGCGTGACGTTTATATGGTGAGGTGAGAAAGCTGCAACCTGAAGAGTCGTGCCATTTCCTTCGTCGCTAAAAAACTGAACGGGGAAGACACGGACTCAAGCAACAACTTGGGATTCCTCGTTTTTGAGCCGTTTGTCCTTGGTCCACTGGAAGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCTGCTCGAGCAGGGACCCGTTGGCCCTTCGCGC] [+] EMBL BI515757 [ GGTAGAGCCGGTTGTGATTCCGGCAGTGCACGAGGTGCGAACAGCCACGGGGATACTGGAGCCGTGGCACGACGGATAGCCAGAGCACTCGAGAGAGTGGAGAATCGCGGGAGAGCCAGGGAGAGACAGAGACAGGTAGAGCCTTACTGGCGGTGAAATACGAAGCGGGAAAGAGAGGGAGAAGCTTGAGGCAGGCGCGCGTATTGATTCCCGCGTGACGTTTATATGGTGAGGTGAG ] consensusID : consensus_667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence [CCGTGTACGACGTTGTTAAGTTACGCTTGGCGTGAGTCGGTGTAGTTAATCTCACGTGCACGCGCGCGTGTCTCTTCTCGTGAATAACTTTTTTTTTTAGTTCGTATTTTTTTTTTCCTCTTTTTCTTTCCTTTTAACGAGCTTTTATACAAAAATTGCGCCGATCTGTGAGATATCTGGTGAATTGTTGGAACGAGTTGTAGATTGTGTTTGTGAATATCATCTACAAAAATCATCTGCAAAGAATTTTATTTGGCTGAATTTTTTGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCTGCTCGAGCAGGGACCCGTTGGCCCTTCGCGCGAGAAATGATTTTTAGAAGGAAGNGGGCATGACGCACCGAACTCATGCAGTGGCGAAAACAC] [+] EMBL BI510995 [CCGTGTACGACGTTGTTAAGTTACGCTTGGCGTGAGTCGGTGTAGTTAATCTCACGTGCACGCGCGCGTGTCTCTTCTCGTGAATAACTTTTTTTTTTAGTTCGTATTTTTTTTTTCCTCTTTTTCTTTCCTTTTAACGAGCTTTTATACAAAAATTGCGCCGATCTGTGAGATATCTGGTGAATTGTTGGAACGAGTTGTAGATTGTGTTTGTGAATATCATCTACAAAAATCATCTGCAAAGAATTTTATTTGGCTGAATTTTTTGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCTGCTCGAGCAGGGACCCGTTGGCCCTTCGCGCGAGAAATGATTTTTAGAAGGAAGNGGGCATGACGCACCGAACTCATGCAGTGGCGAAAACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_667#0 ATAAAAGGGGTTGGCTTAGGGTCCGGTCTCTGAGTCGTTACCTCCTGGTGGAGGATTACC 60 consensus_667#1 ------------------------------------------------------------ consensus_667#0 TGCAGGTAGAGCCGGTTGTGATTCCGGCAGTGCACGAGGTGCGAACAGCCACGGGGATAC 120 consensus_667#1 ------------------------------------------------------------ consensus_667#0 TGGAGCCGTGGCACGACGGATAGCCAGAGCACTCGAGAGAGTGGAGAATCGCGGGAGAGC 180 consensus_667#1 --------------------------------------CCGTGTACGA-CGTTGTTAAGT 21 *** * * ** * ** consensus_667#0 CAGGGAGAGACAGAGACAGGTAGAGCCTTACTGGCGGTGAAATACGAAGCGGGAAAGAGA 240 consensus_667#1 TACGCTTGGCGTGAGTC-GGTGTAGTTAATCTCACGTGCACGCGCGC-GTGTCTCTTCTC 79 * * * *** * *** ** ** ** * ** * * consensus_667#0 GGGAGAAGCTTGAGGCAGGCGCGCGTATTGATTCCCGCGTGACGTTTATATGGTGAGGTG 300 consensus_667#1 GTGAATAACTTTTTTTTTTAGTTCGTATTTTTTTTTTCCTCTTTTTCTTTCCTT----TT 135 * ** * *** * ****** ** * * ** * * * consensus_667#0 AGAAAGCTGCAACCTGAAGAGTCGTGCCATTTCCTTCGTCG-CTAAAAAACTGAACGGGG 359 consensus_667#1 AACGAGCTTTTATACAAAAA-TTGCGCCGATCTGTGAGATATCTGGTGAATTGTTGGAAC 194 * **** * ** * * * *** * * * ** ** ** * consensus_667#0 AAGACACGGACTCAAGCAACAACTTGGGATTCC-----TCGTTTTTGAGCCGTTTGTCCT 414 consensus_667#1 GAGTTGTAGATTGTGTTTGTGAATATCATCTACAAAAATCATCTGCAAAGAATTTTATTT 254 ** ** * * * * * ** * * * *** * consensus_667#0 TGGTCCACTGGAAGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCT 474 consensus_667#1 GGCTGAATTTTTTGGAGATTGGTGATCAGTGGACCAGAATGAGAGAGATCATTCAAGTCT 314 * * * * *********************************************** consensus_667#0 GCTCGAGCAGGGACCCGTTGGCCCTTCGCGC----------------------------- 505 consensus_667#1 GCTCGAGCAGGGACCCGTTGGCCCTTCGCGCGAGAAATGATTTTTAGAAGGAAGNGGGCA 374 ******************************* consensus_667#0 --------------------------------- consensus_667#1 TGACGCACCGAACTCATGCAGTGGCGAAAACAC 407 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |