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Apis mellifera
cluster # 669 cluster # 669       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_669#0 length = 503 sequences # 2  
 consensus_669#1 length = 459 sequences # 1  
consensusID : consensus_669#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 503
fasta sequence 
                              [GAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGTTTTTTGACGCAAACACATACATCAAAAGATATCGAGTACCGGTGAAGAAGATTCCAGAGGAGCTGCTGATCAAATTTGTTGCCTTGTAGATGAGGGTGAACGATGTACTCGGCCAGCTGGCAACGCTTCTTATAGTAAACGTATTCAAAAAACTGTAACTCAGCGACGATTAAAACTTAATCTTGATCAAGTGGCACGTCATATATACATTTNNGATTACCATAAACAAGTAATACAATGTGCAAGATCTAAACAACAACA]

[+] EMBL BI513862             [GAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGTTTTTTGACGCAAACACATACATCAAAAGATATCGAGTACCGGTGAAGAAGATTCCAGAGGAGCTGCTGATCAAATTTGTTGCCTTGTAGATGAGGGTGAACGATGTACTCGGCCAGCTGGCAACGCTTCTTATAGTAAACGTATTCAAAAAACTGTAACTCAGCGACGATTAAAACTTAATCTTGATCAAGTGGCACGTCATATATACATTTGTGATTACCATAAACAAGTAATACAATGTGCAAGATCTAAACAACAACA]
[+] EMBL BI513909             [GAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGTTTTTTGACGCAAACACATACATCAAAAGATATCGAGTACCGGTGAAGAAGATTCCAGAGGAGCTGCTGATCAAATTTGTTGCCTTGTAGATGAGGGTGAACGATGTACTCGGCCAGCTGGCAACGCTTCTTATAGTAAACGTATTCAAAAAACTGTAACTCAGCGACGATTAAAACTTAATCTTGATCAAGTGGCACGTCATATATACATTTNNGATTACCATAAACAAGTAATACAATGTGCAAGATCTAAA        ]




>consensus_669#0
GAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAA
ACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTT
TACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAA
TGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCT
GTTTTTTGACGCAAACACATACATCAAAAGATATCGAGTACCGGTGAAGAAGATTCCAGA
GGAGCTGCTGATCAAATTTGTTGCCTTGTAGATGAGGGTGAACGATGTACTCGGCCAGCT
GGCAACGCTTCTTATAGTAAACGTATTCAAAAAACTGTAACTCAGCGACGATTAAAACTT
AATCTTGATCAAGTGGCACGTCATATATACATTTNNGATTACCATAAACAAGTAATACAA
TGTGCAAGATCTAAACAACAACA

consensusID : consensus_669#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence 
                              [TAGAAACATAAACGTATTACGAAGNGACAGTAGTGTTAAATGTTTGTTTTGTAACAAAATTTTTAAAATATTTATAGTAATATATATATAAAATCAACTCGTATGTTAAATTGTTTAAGAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGTTTTTTGACGCAAATACATACATCAAAAGATATCGAGGTTGTTAAAGTTCTAAATACTCTTCATACCGATTTAGTTGATGTTAAGAATAAAAAAAAATGA]

[+] EMBL BI516040             [TAGAAACATAAACGTATTACGAAGNGACAGTAGTGTTAAATGTTTGTTTTGTAACAAAATTTTTAAAATATTTATAGTAATATATATATAAAATCAACTCGTATGTTAAATTGTTTAAGAGAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAACTCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTACACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATGAAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGTTTTTTGACGCAAATACATACATCAAAAGATATCGAGGTTGTTAAAGTTCTAAATACTCTTCATACCGATTTAGTTGATGTTAAGAATAAAAAAAAATGA]




>consensus_669#1
TAGAAACATAAACGTATTACGAAGNGACAGTAGTGTTAAATGTTTGTTTTGTAACAAAAT
TTTTAAAATATTTATAGTAATATATATATAAAATCAACTCGTATGTTAAATTGTTTAAGA
GAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAAC
TCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTA
CACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATG
AAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGT
TTTTTGACGCAAATACATACATCAAAAGATATCGAGGTTGTTAAAGTTCTAAATACTCTT
CATACCGATTTAGTTGATGTTAAGAATAAAAAAAAATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_669#0      ------------------------------------------------------------
consensus_669#1      TAGAAACATAAACGTATTACGAAGNGACAGTAGTGTTAAATGTTTGTTTTGTAACAAAAT 60
                                                                                 

consensus_669#0      ----------------------------------------------------------GA 2
consensus_669#1      TTTTAAAATATTTATAGTAATATATATATAAAATCAACTCGTATGTTAAATTGTTTAAGA 120
                                                                               **

consensus_669#0      GAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAAC 62
consensus_669#1      GAAAGAAAGTGAAATGTTATATGACATCGTTTAACATTGAAGTCTTCGTAATACGCAAAC 180
                     ************************************************************

consensus_669#0      TCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTA 122
consensus_669#1      TCTAATATTTAAATTATCGATTTCTTGTTTGAATCTTTACATTAAATAAAAATTTTTTTA 240
                     ************************************************************

consensus_669#0      CACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATG 182
consensus_669#1      CACTGGCAATTGAAATATAAATTTCTTTGAAGAATTATCAATAACAAATGAAATTCAATG 300
                     ************************************************************

consensus_669#0      AAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGT 242
consensus_669#1      AAAAATTATGAGTGTGAAAAGTAGACATCATCGAGTATATTTTACTTTCAGTCACGCTGT 360
                     ************************************************************

consensus_669#0      TTTTTGACGCAAACACATACATCAAAAGATATCGAGTACCGGTGAAGAAGATTCCAGAGG 302
consensus_669#1      TTTTTGACGCAAATACATACATCAAAAGATATCGA-----GGTTGTTAAAGTTCTAAATA 415
                     ************* *********************     ***    **  *** * *  

consensus_669#0      AGCTGCTGATCAAATTTGTTGCC-TTGTAGATGAGGGTGAACGATGTACTCGGCCAGCTG 361
consensus_669#1      CTCTTCATACCGATTTAGTTGATGTTAAGAATAAAAAAAAATGA---------------- 459
                       ** *  * * * ** ****   **    ** *     ** **                

consensus_669#0      GCAACGCTTCTTATAGTAAACGTATTCAAAAAACTGTAACTCAGCGACGATTAAAACTTA 421
consensus_669#1      ------------------------------------------------------------
                                                                                 

consensus_669#0      ATCTTGATCAAGTGGCACGTCATATATACATTTNNGATTACCATAAACAAGTAATACAAT 481
consensus_669#1      ------------------------------------------------------------
                                                                                 

consensus_669#0      GTGCAAGATCTAAACAACAACA 503
consensus_669#1      ----------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)