|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 780 fasta sequence
[ATATTACCATATATCTGTAATTGGCAAACAGAAAGAAGACGAGGAGGATTGAATCTTCCACGTGACGATGATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGAACTTTTCAGGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATCACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATAAATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAGAGCTGCAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTAGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATATATTTGTAATATTATTGTAAAAATAGAAATTTCTGTATTAATATGATTATTTTATTATAAGAAAAAATTATATATAAAA]
[+] EMBL BI511767 [ATATTACCATATATCTGTAATTGGCAAACAGAAAGAAGACGAGGAGGATTGAATCTTCCACGTGACGATGATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGAACTTTTCAGGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATCACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATAAATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAGAGCTGCAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATT ]
[-] EMBL BQ103789 [ ATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGACCTTTTCAGGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATCACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATAAATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAGAGCTGCAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTAGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATATATTTGTAATATTATTGTAAAAATAGAAATTTCTGTATTAATATGATTATTTTATTATAAGAAAAAATTATATATAAAA]
consensusID : consensus_703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence
[TTTTTATATTTATACATATTTCGTTTCTTTGAAAAATTTAATAATTAAGCAATACAGCGCATATTTTTTTTTATCAATAAATTATGATCTTTTTTTCATGCAACGTTATTTTTAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTNGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATAT]
[+] EMBL BI509164 [TTTTTATATTTATACATATTTCGTTTCTTTGAAAAATTTAATAATTAAGCAATACAGCGCATATTTTTTTTTATCAATAAATTATGATCTTTTTTTCATGCAACGTTATTTTTAGGAGTTTATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCTGTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGTGGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAAAATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATGAACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCAACTNGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTAGTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_703#0 ATATTACCATATATCTGTAATTGGCAAACAGAAAGAAGACGAGGAGGATTGAATCTTCCA 60
consensus_703#1 ------------------------------------------------------------
consensus_703#0 CGTGACGATGATGAAAGATCTTTTTCAGAAGATGTCTCAGCAGTAGTAAGGAACTTTTCA 120
consensus_703#1 ------------------------------------------------------------
consensus_703#0 GGAATTTCCGGATATCGTGTACAAGCATGGGATTTTTCTAAGGGGGAAATACCAGATATC 180
consensus_703#1 -----------------------------------------------------------T 1
consensus_703#0 ACAAATTCTGAAAAAAATATTGTTATACACAAGTGTAAAATACGTAATGATGCTAGTATA 240
consensus_703#1 TTTTATATTTATACATATTTCGTTTCTTTGAAAAATTTAATAATTAAGCAATACAGCGCA 61
** * * * * ** * *** ** * **** *** * ** *
consensus_703#0 AATATTTCTTCGGATGGTAAATTATTGGCAACATGCTTTATGAG---AGCTGCAGGAGTT 297
consensus_703#1 TAT-TTTTTTTTATCAATAAATTATGATCTTTTTTTCATGCAACGTTATTTTTAGGAGTT 120
** *** ** ******** * * * * * * *******
consensus_703#0 TATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCT 357
consensus_703#1 TATAGTTTACAATGGGAAACTTTAGGAGAAGAAATTTATTGGACAGAAGTATATAATTCT 180
************************************************************
consensus_703#0 GTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGT 417
consensus_703#1 GTGATTTCTGTTTCAATTTCGCCGACACAAGAACATCTTTTAGTAGGTCTAGCAAGAAGT 240
************************************************************
consensus_703#0 GGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAA 477
consensus_703#1 GGTATGAGAAATGACTATACAATGGCTATTATTTATAGATTAACACATAAACAATCCCAA 300
************************************************************
consensus_703#0 AATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATG 537
consensus_703#1 AATGACAAACCATGTATTCAAGATATGGATTTTAATCTAGCAAAATATTTACATTTTATG 360
************************************************************
consensus_703#0 AACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCA 597
consensus_703#1 AACTCCAATAAAAGAAACACTATGTTATTAGTTAGAGATTTATTACAAAATAATCAATCA 420
************************************************************
consensus_703#0 ACTAGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTA 657
consensus_703#1 ACTNGAGAACACACAAGTATAAATTGTATAAGATGGGCACCACAACCTGGCCAAGGTCTA 480
*** ********************************************************
consensus_703#0 GTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATATATTTGTAATATTATT 717
consensus_703#1 GTTTATGCTACCAACACTGGTCGATTAGCTATTCTTCATTAATAT--------------- 525
*********************************************
consensus_703#0 GTAAAAATAGAAATTTCTGTATTAATATGATTATTTTATTATAAGAAAAAATTATATATA 777
consensus_703#1 ------------------------------------------------------------
consensus_703#0 AAA 780
consensus_703#1 ---
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |