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Apis mellifera
cluster # 715 cluster # 715       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_715#0 length = 609 sequences # 2  
consensus_715#1 length = 496 sequences # 1  

consensusID : consensus_715#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 609
fasta sequence
                              [CATCGAAATTACTTGTTCTCAAGAGCCGAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTTCATATCGATATGAAGTTCGATCTTTCAAAGATACCTACGTTATAATTTTATCGATCGAAAAACATAAATATAAGTGAGAAACAAGGAGAAGAATAGACAAGACACAAATAAGTAAATATCTCAACATCTTGTAGAGACAAGACAAGAGTGCATAGATTGATGACATTTATAAGAATAAGTCGGTACTTTACTTTGCCAGGATGAAATTAAATTCAACCAAGATAAATGGGAGCGCTAAGCGTGCTTCGCTTCGGTGAACATGTGAAATGTAAATTAGTTTGAATTAAGGTGGAGTTCACTGGTCAGGCTTCTATTAAATGTATAAATACGCGTGGACGGTTTCCAGCGGCTGCGATTCGTGTTTCGTGTCGCGTTACCAGCTGCGACACTGTTTCTAATTAA]

[+] EMBL BI515038             [CATCGAAATTACTTGTTCTCAAGAGCCGAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTTCATATCGATATGAAGTTCGATCTTTCAAAGATACCTACGTTATAATTTTATCGATCGAAAAACATAAATATAAGTGAGAAACAAGGAGAAGAATAGACAAGACACAAATAAGTAAATATCTCAACATCTTGTAGAGACAAGACAAGAGTGCATAGATTGATGACATTTATAAGAATAAGTCGGTACTTTACTTTGCCAGGATGAAATTAAATTCAACCAAGATAAATGGGAGCGCTAAGCGTGCTTCGCTTCGGTGAACATGTGAAATGTA                                                                                                                                   ]
[+] EMBL BI510004             [     AAATTACTTGTTCTCAAGAGCCGAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTTCATATCGATATGAAGTTCGATCTTTCAAAGATACCTACGTTATAATTTTATCGATCGAAAAACATAAATATAAGTGAGAAACAAGGAGAAGAATAGACAAGACACAAATAAGTAAATATCTCAACATCTTGTAGAGACAAGACAAGAGTGCATAGATTGATGACATTTATAAGAATAAGTCGGTACTTTACTTTGCCAGGATGAAATTAAATTCAACCAAGATAAATGGGAGCGCTAAGCGTGCTTCGCTTCGGTGAACATGTGAAATGTAAATTAGTTTGAATTAAGGTGGAGTTCACTGGTCAGGCTTCTATTAAATGTATAAATACGCGTGGACGGTTTCCAGCGGCTGCGATTCGTGTTTCGTGTCGCGTTACCAGCTGCGACACTGTTTCTAATTAA]


>consensus_715#0 CATCGAAATTACTTGTTCTCAAGAGCCGAAGAATCGAGTAACGTGCGTTCAATAAGAAGA ATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAA ATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAAT TATATTTTTTCCTGCTGTTTTGATTTTCATATCGATATGAAGTTCGATCTTTCAAAGATA CCTACGTTATAATTTTATCGATCGAAAAACATAAATATAAGTGAGAAACAAGGAGAAGAA TAGACAAGACACAAATAAGTAAATATCTCAACATCTTGTAGAGACAAGACAAGAGTGCAT AGATTGATGACATTTATAAGAATAAGTCGGTACTTTACTTTGCCAGGATGAAATTAAATT CAACCAAGATAAATGGGAGCGCTAAGCGTGCTTCGCTTCGGTGAACATGTGAAATGTAAA TTAGTTTGAATTAAGGTGGAGTTCACTGGTCAGGCTTCTATTAAATGTATAAATACGCGT GGACGGTTTCCAGCGGCTGCGATTCGTGTTTCGTGTCGCGTTACCAGCTGCGACACTGTT TCTAATTAA



consensusID : consensus_715#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence
                              [GAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTTCATATCGAGTAAGGATATTTCAAGATTAAAGATTTTTAATTATCTTGTTAAATATCCTCGTCTATTTTTATTAGATTAAACGTATTAATTAAATGTCAAGGAGATCTCGCAAGTTTAATCTAGCGTTGGACGGTGTATGGAACATCGTGAAGTGGTGTAGTTATGCAAATCGGTACCGAAACTTTTTAATGAAAATTTGTAATTTCGAATTTTCTAAGAACTCTAAACTTTCGAGATGCGATGAAAATGTTAATCAAACGNNGTCTCGGTGTTTCAGCGGGATATCCAACGCCTGTTGTGACTTGCTGTTTGCATT]

[+] EMBL BI516125             [GAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTTCATATCGAGTAAGGATATTTCAAGATTAAAGATTTTTAATTATCTTGTTAAATATCCTCGTCTATTTTTATTAGATTAAACGTATTAATTAAATGTCAAGGAGATCTCGCAAGTTTAATCTAGCGTTGGACGGTGTATGGAACATCGTGAAGTGGTGTAGTTATGCAAATCGGTACCGAAACTTTTTAATGAAAATTTGTAATTTCGAATTTTCTAAGAACTCTAAACTTTCGAGATGCGATGAAAATGTTAATCAAACGNNGTCTCGGTGTTTCAGCGGGATATCCAACGCCTGTTGTGACTTGCTGTTTGCATT]


>consensus_715#1 GAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACC GTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATT GTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTT CATATCGAGTAAGGATATTTCAAGATTAAAGATTTTTAATTATCTTGTTAAATATCCTCG TCTATTTTTATTAGATTAAACGTATTAATTAAATGTCAAGGAGATCTCGCAAGTTTAATC TAGCGTTGGACGGTGTATGGAACATCGTGAAGTGGTGTAGTTATGCAAATCGGTACCGAA ACTTTTTAATGAAAATTTGTAATTTCGAATTTTCTAAGAACTCTAAACTTTCGAGATGCG ATGAAAATGTTAATCAAACGNNGTCTCGGTGTTTCAGCGGGATATCCAACGCCTGTTGTG ACTTGCTGTTTGCATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_715#0      CATCGAAATTACTTGTTCTCAAGAGCCGAAGAATCGAGTAACGTGCGTTCAATAAGAAGA 60
consensus_715#1      ---------------------------GAAGAATCGAGTAACGTGCGTTCAATAAGAAGA 33
                                                *********************************

consensus_715#0      ATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAA 120
consensus_715#1      ATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAA 93
                     ************************************************************

consensus_715#0      ATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAAT 180
consensus_715#1      ATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAAT 153
                     ************************************************************

consensus_715#0      TATATTTTTTCCTGCTGTTTTGATTTTCATATCGATATGAAGTTCGATCTTTCAAAGATA 240
consensus_715#1      TATATTTTTTCCTGCTGTTTTGATTTTCATATCGA-GTAAGG----ATATTTCAAGATTA 208
                     ***********************************  * * *    ** ******   **

consensus_715#0      CCTACGTTATAATTTTATCGATCGAAAAACATAAATATAAGTGAGAAACAAGGAGAAGAA 300
consensus_715#1      AAGAT-TTTTAATTATCTTGTTAAATATCCTCGTCTATTTTTATTAGATTAAACGTATTA 267
                        *  ** ***** * * * *  * *  *     ***   *   * *  *   * *  *

consensus_715#0      TAGACAAGACACAAATAAGTAAATATCTCAACATCTTGTAGAGACAAGACAAGAGTGCAT 360
consensus_715#1      ATTAAATGTCAAGGAGATCTCGCAAGTTTAATCTAGCGTTG-GACGGTGTATG-GAACAT 325
                        * * * **   * *  *    *  * **  *   ** * ***     * * *  ***

consensus_715#0      AGATTGATGACATTTATAAGAATAAGTCGGTACTTTACTTTGCCAGGATGAAATTAAATT 420
consensus_715#1      CGTGAAGTGGTGTAGTTATG--CAAATCGGTACCGAAACTTTTTA--ATGAAAATTTGTA 381
                      *     **   *   ** *   ** *******   *  **   *  ****** *   * 

consensus_715#0      CAACCAAGATAAATGGGAGCGCTAAGCGTGCTTCGCTTCGGTGAACATGTGAAATGTAAA 480
consensus_715#1      ATTTCGAATTTTCTAAGAACTCTAAACTTTCGA-GATGCGATGAAAATGTTAATCAAACG 440
                         * *  *   *  ** * **** * * *   * * ** **** **** **    *  

consensus_715#0      TTAGTTTGA-ATTAAGGTGGAGTTCACTGGTCAGGCTTCTATTAAATGTATAAATACGCG 539
consensus_715#1      NNGTCTCGGTGTTTCAGCGGGATATCCAACGCCTGTTGTGACTTGCTGTTTGCATT---- 496
                          * *   **   * **  *   *    *  * *   * *   *** *  **     

consensus_715#0      TGGACGGTTTCCAGCGGCTGCGATTCGTGTTTCGTGTCGCGTTACCAGCTGCGACACTGT 599
consensus_715#1      ------------------------------------------------------------
                                                                                 

consensus_715#0      TTCTAATTAA 609
consensus_715#1      ----------
                               




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)