These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 609 fasta sequence [CATCGAAATTACTTGTTCTCAAGAGCCGAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTTCATATCGATATGAAGTTCGATCTTTCAAAGATACCTACGTTATAATTTTATCGATCGAAAAACATAAATATAAGTGAGAAACAAGGAGAAGAATAGACAAGACACAAATAAGTAAATATCTCAACATCTTGTAGAGACAAGACAAGAGTGCATAGATTGATGACATTTATAAGAATAAGTCGGTACTTTACTTTGCCAGGATGAAATTAAATTCAACCAAGATAAATGGGAGCGCTAAGCGTGCTTCGCTTCGGTGAACATGTGAAATGTAAATTAGTTTGAATTAAGGTGGAGTTCACTGGTCAGGCTTCTATTAAATGTATAAATACGCGTGGACGGTTTCCAGCGGCTGCGATTCGTGTTTCGTGTCGCGTTACCAGCTGCGACACTGTTTCTAATTAA] [+] EMBL BI515038 [CATCGAAATTACTTGTTCTCAAGAGCCGAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTTCATATCGATATGAAGTTCGATCTTTCAAAGATACCTACGTTATAATTTTATCGATCGAAAAACATAAATATAAGTGAGAAACAAGGAGAAGAATAGACAAGACACAAATAAGTAAATATCTCAACATCTTGTAGAGACAAGACAAGAGTGCATAGATTGATGACATTTATAAGAATAAGTCGGTACTTTACTTTGCCAGGATGAAATTAAATTCAACCAAGATAAATGGGAGCGCTAAGCGTGCTTCGCTTCGGTGAACATGTGAAATGTA ] [+] EMBL BI510004 [ AAATTACTTGTTCTCAAGAGCCGAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTTCATATCGATATGAAGTTCGATCTTTCAAAGATACCTACGTTATAATTTTATCGATCGAAAAACATAAATATAAGTGAGAAACAAGGAGAAGAATAGACAAGACACAAATAAGTAAATATCTCAACATCTTGTAGAGACAAGACAAGAGTGCATAGATTGATGACATTTATAAGAATAAGTCGGTACTTTACTTTGCCAGGATGAAATTAAATTCAACCAAGATAAATGGGAGCGCTAAGCGTGCTTCGCTTCGGTGAACATGTGAAATGTAAATTAGTTTGAATTAAGGTGGAGTTCACTGGTCAGGCTTCTATTAAATGTATAAATACGCGTGGACGGTTTCCAGCGGCTGCGATTCGTGTTTCGTGTCGCGTTACCAGCTGCGACACTGTTTCTAATTAA] consensusID : consensus_715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [GAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTTCATATCGAGTAAGGATATTTCAAGATTAAAGATTTTTAATTATCTTGTTAAATATCCTCGTCTATTTTTATTAGATTAAACGTATTAATTAAATGTCAAGGAGATCTCGCAAGTTTAATCTAGCGTTGGACGGTGTATGGAACATCGTGAAGTGGTGTAGTTATGCAAATCGGTACCGAAACTTTTTAATGAAAATTTGTAATTTCGAATTTTCTAAGAACTCTAAACTTTCGAGATGCGATGAAAATGTTAATCAAACGNNGTCTCGGTGTTTCAGCGGGATATCCAACGCCTGTTGTGACTTGCTGTTTGCATT] [+] EMBL BI516125 [GAAGAATCGAGTAACGTGCGTTCAATAAGAAGAATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAAATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAATTATATTTTTTCCTGCTGTTTTGATTTTCATATCGAGTAAGGATATTTCAAGATTAAAGATTTTTAATTATCTTGTTAAATATCCTCGTCTATTTTTATTAGATTAAACGTATTAATTAAATGTCAAGGAGATCTCGCAAGTTTAATCTAGCGTTGGACGGTGTATGGAACATCGTGAAGTGGTGTAGTTATGCAAATCGGTACCGAAACTTTTTAATGAAAATTTGTAATTTCGAATTTTCTAAGAACTCTAAACTTTCGAGATGCGATGAAAATGTTAATCAAACGNNGTCTCGGTGTTTCAGCGGGATATCCAACGCCTGTTGTGACTTGCTGTTTGCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_715#0 CATCGAAATTACTTGTTCTCAAGAGCCGAAGAATCGAGTAACGTGCGTTCAATAAGAAGA 60 consensus_715#1 ---------------------------GAAGAATCGAGTAACGTGCGTTCAATAAGAAGA 33 ********************************* consensus_715#0 ATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAA 120 consensus_715#1 ATCATTCTTGAAAATATCGAGAAAACCGTCTTAACATTATCCGCATGTGTCGGTCGTAAA 93 ************************************************************ consensus_715#0 ATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAAT 180 consensus_715#1 ATTATTCGCATCGAGAAAGTGTGTATTGTGTTTGTATTGTGTAATATTTTGGACGTAAAT 153 ************************************************************ consensus_715#0 TATATTTTTTCCTGCTGTTTTGATTTTCATATCGATATGAAGTTCGATCTTTCAAAGATA 240 consensus_715#1 TATATTTTTTCCTGCTGTTTTGATTTTCATATCGA-GTAAGG----ATATTTCAAGATTA 208 *********************************** * * * ** ****** ** consensus_715#0 CCTACGTTATAATTTTATCGATCGAAAAACATAAATATAAGTGAGAAACAAGGAGAAGAA 300 consensus_715#1 AAGAT-TTTTAATTATCTTGTTAAATATCCTCGTCTATTTTTATTAGATTAAACGTATTA 267 * ** ***** * * * * * * * *** * * * * * * * consensus_715#0 TAGACAAGACACAAATAAGTAAATATCTCAACATCTTGTAGAGACAAGACAAGAGTGCAT 360 consensus_715#1 ATTAAATGTCAAGGAGATCTCGCAAGTTTAATCTAGCGTTG-GACGGTGTATG-GAACAT 325 * * * ** * * * * * ** * ** * *** * * * *** consensus_715#0 AGATTGATGACATTTATAAGAATAAGTCGGTACTTTACTTTGCCAGGATGAAATTAAATT 420 consensus_715#1 CGTGAAGTGGTGTAGTTATG--CAAATCGGTACCGAAACTTTTTA--ATGAAAATTTGTA 381 * ** * ** * ** ******* * ** * ****** * * consensus_715#0 CAACCAAGATAAATGGGAGCGCTAAGCGTGCTTCGCTTCGGTGAACATGTGAAATGTAAA 480 consensus_715#1 ATTTCGAATTTTCTAAGAACTCTAAACTTTCGA-GATGCGATGAAAATGTTAATCAAACG 440 * * * * ** * **** * * * * * ** **** **** ** * consensus_715#0 TTAGTTTGA-ATTAAGGTGGAGTTCACTGGTCAGGCTTCTATTAAATGTATAAATACGCG 539 consensus_715#1 NNGTCTCGGTGTTTCAGCGGGATATCCAACGCCTGTTGTGACTTGCTGTTTGCATT---- 496 * * ** * ** * * * * * * * *** * ** consensus_715#0 TGGACGGTTTCCAGCGGCTGCGATTCGTGTTTCGTGTCGCGTTACCAGCTGCGACACTGT 599 consensus_715#1 ------------------------------------------------------------ consensus_715#0 TTCTAATTAA 609 consensus_715#1 ---------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |