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Apis mellifera
cluster # 717 cluster # 717       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_717#0 length = 525 sequences # 1  
 consensus_717#1 length = 416 sequences # 2  
consensusID : consensus_717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 525
fasta sequence 
                              [TTATTGATATAATAATATTGATGTAACAACGTTAATCTAATGTGTATGAAGATGATTAAAATACCACGTACATTTTAAAAAATAGGAAAATATAAAAGAAGACACCATGGTTTCTGTTAATCCCAGAGTATTTTTTGATATAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGAAAAAGGACTTGGAAAAACAACTGGTAAACAATTGCATTATAAAGGAATTGTTTTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGGAGAATCAATTTATGGTGGAACATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATCATTTTTATTATCAATGGCAAATCGTGGTAGNGACACAAATGGTTCACAATTTTTTATTCGTGAGGGAAGGGTCTGCACACCACTACTACAACACAATGACCAATG]

[+] EMBL BI513616             [TTATTGATATAATAATATTGATGTAACAACGTTAATCTAATGTGTATGAAGATGATTAAAATACCACGTACATTTTAAAAAATAGGAAAATATAAAAGAAGACACCATGGTTTCTGTTAATCCCAGAGTATTTTTTGATATAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGAAAAAGGACTTGGAAAAACAACTGGTAAACAATTGCATTATAAAGGAATTGTTTTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGGAGAATCAATTTATGGTGGAACATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATCATTTTTATTATCAATGGCAAATCGTGGTAGNGACACAAATGGTTCACAATTTTTTATTCGTGAGGGAAGGGTCTGCACACCACTACTACAACACAATGACCAATG]




>consensus_717#0
TTATTGATATAATAATATTGATGTAACAACGTTAATCTAATGTGTATGAAGATGATTAAA
ATACCACGTACATTTTAAAAAATAGGAAAATATAAAAGAAGACACCATGGTTTCTGTTAA
TCCCAGAGTATTTTTTGATATAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGA
ACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGA
AAAAGGACTTGGAAAAACAACTGGTAAACAATTGCATTATAAAGGAATTGTTTTTCATAG
AGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGG
AGAATCAATTTATGGTGGAACATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATC
ATTTTTATTATCAATGGCAAATCGTGGTAGNGACACAAATGGTTCACAATTTTTTATTCG
TGAGGGAAGGGTCTGCACACCACTACTACAACACAATGACCAATG

consensusID : consensus_717#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 416
fasta sequence 
                              [TCTGTTAATCCCAGAGTATTTTTTGATACAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGAAAAAGGACTTGGAAAAACAACTGGCAAACAATTGCATTATAAAGGAATTGTTTTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGGAGAATCAANNCATGGNGGAAAATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATCATTTTTATTATCAATGGCAAATCNNGGTAGAGACACAAATGGTTCACAATTTTTTATGTAAGTATTCATAAAAAATATAAATATATAAACTTTAATGAAATAATATAA]

[+] EMBL BI510852             [TCTGTTAATCCCAGAGTATTTTTTGATATAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGAAAAAGGACTTGGAAAAACAACTGGCAAACAATTGCATTATAAAGGAATTGTTTTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGGAGAATCAATTTATGGTGGAACATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATCATTTTTATTATCAATGGCAAATCNNGGTAGAGACACAAATGGTTCACAATTTTTTATGTAAGTATTCATAAAAAATATAAATATATAAACTTTAATGAAATAATATAA]
[-] EMBL BI507657             [               tTTTTTTTTGATACAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGAAAAAGGACTTGGAAAAACAACTGGCAAACAATTGCATTATAAAGGAATTGTTTTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGGAGAATCACNNCCTTGNATCAAA                                                                                                                                                  ]




>consensus_717#1
TCTGTTAATCCCAGAGTATTTTTTGATACAGAAGTTGGTGGTCTCCCAATGGGCCGCATA
GTGTTTGAACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGC
ACAGGAGAAAAAGGACTTGGAAAAACAACTGGCAAACAATTGCATTATAAAGGAATTGTT
TTTCATAGAGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGG
ACAGGAGGAGAATCAANNCATGGNGGAAAATTTGCAGATGAAAATTTTATTTTAAAACAT
AATAAATCATTTTTATTATCAATGGCAAATCNNGGTAGAGACACAAATGGTTCACAATTT
TTTATGTAAGTATTCATAAAAAATATAAATATATAAACTTTAATGAAATAATATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_717#0      TTATTGATATAATAATATTGATGTAACAACGTTAATCTAATGTGTATGAAGATGATTAAA 60
consensus_717#1      ------------------------------------------------------------
                                                                                 

consensus_717#0      ATACCACGTACATTTTAAAAAATAGGAAAATATAAAAGAAGACACCATGGTTTCTGTTAA 120
consensus_717#1      ----------------------------------------------------TCTGTTAA 8
                                                                         ********

consensus_717#0      TCCCAGAGTATTTTTTGATATAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGA 180
consensus_717#1      TCCCAGAGTATTTTTTGATACAGAAGTTGGTGGTCTCCCAATGGGCCGCATAGTGTTTGA 68
                     ******************** ***************************************

consensus_717#0      ACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGA 240
consensus_717#1      ACTCTTTGCAGATATTTGTCCAATAACATGTGAAAATTTTCGTGTCCTATGCACAGGAGA 128
                     ************************************************************

consensus_717#0      AAAAGGACTTGGAAAAACAACTGGTAAACAATTGCATTATAAAGGAATTGTTTTTCATAG 300
consensus_717#1      AAAAGGACTTGGAAAAACAACTGGCAAACAATTGCATTATAAAGGAATTGTTTTTCATAG 188
                     ************************ ***********************************

consensus_717#0      AGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGG 360
consensus_717#1      AGTAGTTAAAGATTTTATGATTCAGGGTGGTGATTTTTCAGTAGGTAATGGGACAGGAGG 248
                     ************************************************************

consensus_717#0      AGAATCAATTTATGGTGGAACATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATC 420
consensus_717#1      AGAATCAANNCATGGNGGAAAATTTGCAGATGAAAATTTTATTTTAAAACATAATAAATC 308
                     ********   **** **** ***************************************

consensus_717#0      ATTTTTATTATCAATGGCAAATCGTGGTAGNGACACAAATGGTTCACAATTTTTTATTCG 480
consensus_717#1      ATTTTTATTATCAATGGCAAATCNNGGTAGAGACACAAATGGTTCACAATTTTTTATGTA 368
                     ***********************  ***** **************************   

consensus_717#0      TGAGG----GAAGGGTCTGCACACCACTACTACAACACAATGACCAATG 525
consensus_717#1      AGTATTCATAAAAAATATAAATATATAAACTTTAATGAAATAATATAA- 416
                      *        **   * *  * *     ***  **   *** *   *


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)