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Apis mellifera
cluster # 729 cluster # 729       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_729#0 length = 683 sequences # 2  
 consensus_729#1 length = 282 sequences # 1  
consensusID : consensus_729#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 683
fasta sequence 
                              [TTAATCCTCGGTGTACCCTACACGTGGCTAGTAAGGTGGTCTCGTCGACCGGGCGAAGTCGTCGGATAAGTCGTCGAGGAAGGGAAGAGTGAATGGGGAAGAAAAAGAAGAGAAAGAACGGGAAGAAGGAAATTAAAACAAAAAAGGGAAGATCTGTTTGCGAGGGAACAGAAGAAGAAGAACAGATTTCAGCCGAGAAGACGAGAATTAGAGAAGCGGGCTTCGAAAAACGTATCGACGATTTCTCGACCGATATTTTGGAACGTGCGATGCTAGCATTAAAAAATAAAATAAAA-GAAATAAACGCACTCAATCGTTGAGAAGAAAAATGGATAACTGGCGTTAAGAATATTCCGATCGGCAGACGGACGTCGCGTATTATTAATAACAGTTCTGCGATCGACTTTCAGCTGACTCTCAAACACGAACCGAGAATGACAGACACGCGTATATACACGTATATACACACACACACCACGTACACGCGCGCATGCACACCCAAAGACATAATAAGGAGAGGGAGACTCACACAGGAGAATTGGGAAAAAAAAAAATAAGGAGGAAAGATCATAGCTGTGTATGCATATACACCACACTGTACACTAAGATTCTTAATGTTGTAACACTGTAACTCTATTAACTGATTCATAATGCAGTTGTATTCCATAGTAAGTTAAACAAAG]

[+] EMBL BI507593             [TTAATCCTCGGTGTACCCTACACGTGGCTAGTAAGGTGGTCTCGTCGACCGGGCGAAGTCGTCGGATAAGTCGTCGAGGAAGGGAAGAGTGAATGGGGAAGAAAAAGAAGAGAAAGAACGGGAAGAAGGAAATTAAAACAAAAAAGGGAAGATCTGTTTGCGAGGGAACAGAAGAAGAAGAACAGATTTCAGCCGAGAAGACGAGAATTAGAGAAGCGGGCTTCGAAAAACGTATCGACGATTTCTCGACCGATATTTTGGAACGTGCGATGCTAGCATTAAAAAATAAAATAAAATGAAATAAACGCACTCAATCGTTGAGAAGAAAAATGGATAACTGGCGTTAAGAATATTCCGATCGGCAGACGGACGTCGCG  TTATTAATAACAGTTCTGCGATCGACTTTCAGCTGACTCTCAAACACGAACCGAGAATGACAGACACGCGTATATACACGTATATACACACACACACCACGTACACGCGCGCATGCACACCCAAAGACATAATAAGGAGAGGGAGAC                                                                                                                                                              ]
[+] EMBL BI510022             [                                                                                                                                                                                                                                       GTATCGACGATTTCTCGACCGATATTTTGGAACATGCGATGCTAGCATTAAAAAATAAAATA     AAATAAACGCACTCAATCGTTGAGAAGAAAAATGGATAACTGGCGTTAAGAATATTCCGATCGGCAGACGTACGTCGCGTATTATTAATAACAGTTCTGCGATCGACTTTCAGCTGACTCTCAAACACGAACCGAGAATGACAGACACGCGTATATACACGTATATACACACACACACCACGTACACGCGCGCATGCACACCCAAAGACATAATAAGGAGAGGGAGACTCACACAGGAGAATTGGGAAAAAAAAAAATAAGGAGGAAAGATCATAGCTGTGTATGCATATACACCACACTGTACACTAAGATTCTTAATGTTGTAACACTGTAACTCTATTAACTGATTCATAATGCAGTTGTATTCCATAGTAAGTTAAACAAAG]




>consensus_729#0
TTAATCCTCGGTGTACCCTACACGTGGCTAGTAAGGTGGTCTCGTCGACCGGGCGAAGTC
GTCGGATAAGTCGTCGAGGAAGGGAAGAGTGAATGGGGAAGAAAAAGAAGAGAAAGAACG
GGAAGAAGGAAATTAAAACAAAAAAGGGAAGATCTGTTTGCGAGGGAACAGAAGAAGAAG
AACAGATTTCAGCCGAGAAGACGAGAATTAGAGAAGCGGGCTTCGAAAAACGTATCGACG
ATTTCTCGACCGATATTTTGGAACGTGCGATGCTAGCATTAAAAAATAAAATAAAAGAAA
TAAACGCACTCAATCGTTGAGAAGAAAAATGGATAACTGGCGTTAAGAATATTCCGATCG
GCAGACGGACGTCGCGTATTATTAATAACAGTTCTGCGATCGACTTTCAGCTGACTCTCA
AACACGAACCGAGAATGACAGACACGCGTATATACACGTATATACACACACACACCACGT
ACACGCGCGCATGCACACCCAAAGACATAATAAGGAGAGGGAGACTCACACAGGAGAATT
GGGAAAAAAAAAAATAAGGAGGAAAGATCATAGCTGTGTATGCATATACACCACACTGTA
CACTAAGATTCTTAATGTTGTAACACTGTAACTCTATTAACTGATTCATAATGCAGTTGT
ATTCCATAGTAAGTTAAACAAAG

consensusID : consensus_729#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence 
                              [CTTTTTTCAATACGTCTACCAGTGGCACCAACTACGGGGCAACGATTTCTTTAATCCTCGGTGTACCCTACACGTGGCTAGTAAGGTGGTCTCGTCGACCGGGCGAAGTCGTCGGATAAGTCGTCGAGGAAGGGAAGAAAGAAAGGAGAAAAGAAGAAAGGAAGTAAACGGAGTAAGAAAAAGGAGAAGAAAGGTGCGTGTGCAAGCCCATCTGCCCGCCAACGAGACCCCCCGAAGAAATCAAGCGACGAACAACGGAAAGCGTTATTTCGCGAAAAAAAA]

[+] EMBL BI515713             [CTTTTTTCAATACGTCTACCAGTGGCACCAACTACGGGGCAACGATTTCTTTAATCCTCGGTGTACCCTACACGTGGCTAGTAAGGTGGTCTCGTCGACCGGGCGAAGTCGTCGGATAAGTCGTCGAGGAAGGGAAGAAAGAAAGGAGAAAAGAAGAAAGGAAGTAAACGGAGTAAGAAAAAGGAGAAGAAAGGTGCGTGTGCAAGCCCATCTGCCCGCCAACGAGACCCCCCGAAGAAATCAAGCGACGAACAACGGAAAGCGTTATTTCGCGAAAAAAAA]




>consensus_729#1
CTTTTTTCAATACGTCTACCAGTGGCACCAACTACGGGGCAACGATTTCTTTAATCCTCG
GTGTACCCTACACGTGGCTAGTAAGGTGGTCTCGTCGACCGGGCGAAGTCGTCGGATAAG
TCGTCGAGGAAGGGAAGAAAGAAAGGAGAAAAGAAGAAAGGAAGTAAACGGAGTAAGAAA
AAGGAGAAGAAAGGTGCGTGTGCAAGCCCATCTGCCCGCCAACGAGACCCCCCGAAGAAA
TCAAGCGACGAACAACGGAAAGCGTTATTTCGCGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_729#0      --------------------------------------------------TTAATCCTCG 10
consensus_729#1      CTTTTTTCAATACGTCTACCAGTGGCACCAACTACGGGGCAACGATTTCTTTAATCCTCG 60
                                                                       **********

consensus_729#0      GTGTACCCTACACGTGGCTAGTAAGGTGGTCTCGTCGACCGGGCGAAGTCGTCGGATAAG 70
consensus_729#1      GTGTACCCTACACGTGGCTAGTAAGGTGGTCTCGTCGACCGGGCGAAGTCGTCGGATAAG 120
                     ************************************************************

consensus_729#0      TCGTCGAGGAAGGGAAGAGTGAATGGGGAAGAAAAAGAAGAGAAAGAACGGGAAGAAGGA 130
consensus_729#1      TCGTCGAGGAAGGGAAGAAAGAAAGGAGAAAAGAAGAAAGGAAGTAAACGGAGTAAGAAA 180
                     ******************  *** ** *** * **  ***  *   *****    *   *

consensus_729#0      AATTAAAACAAAAAAGGGA----AGATCTGTTTGCGAGGGAACAGAAGAAGAAGAACAGA 186
consensus_729#1      AAGGAGAAGAAAGGTGCGTGTGCAAGCCCATCTGCCCGCCAACGAGACCCCCCGAAGAAA 240
                     **  * ** ***   * *     *   *  * ***  *  ***   *      *** * *

consensus_729#0      TTTCAGCCGAGAAGACGAGAATTAGAGAAGCGGGCTTCGAAAAACGTATCGACGATTTCT 246
consensus_729#1      TC-------AAGCGACGAACAACGGAAAGCGTTATTTCGCGAAAAAAAA----------- 282
                     *        *   *****  *   ** *       ****  ***   *            

consensus_729#0      CGACCGATATTTTGGAACGTGCGATGCTAGCATTAAAAAATAAAATAAAAGAAATAAACG 306
consensus_729#1      ------------------------------------------------------------
                                                                                 

consensus_729#0      CACTCAATCGTTGAGAAGAAAAATGGATAACTGGCGTTAAGAATATTCCGATCGGCAGAC 366
consensus_729#1      ------------------------------------------------------------
                                                                                 

consensus_729#0      GGACGTCGCGTATTATTAATAACAGTTCTGCGATCGACTTTCAGCTGACTCTCAAACACG 426
consensus_729#1      ------------------------------------------------------------
                                                                                 

consensus_729#0      AACCGAGAATGACAGACACGCGTATATACACGTATATACACACACACACCACGTACACGC 486
consensus_729#1      ------------------------------------------------------------
                                                                                 

consensus_729#0      GCGCATGCACACCCAAAGACATAATAAGGAGAGGGAGACTCACACAGGAGAATTGGGAAA 546
consensus_729#1      ------------------------------------------------------------
                                                                                 

consensus_729#0      AAAAAAAATAAGGAGGAAAGATCATAGCTGTGTATGCATATACACCACACTGTACACTAA 606
consensus_729#1      ------------------------------------------------------------
                                                                                 

consensus_729#0      GATTCTTAATGTTGTAACACTGTAACTCTATTAACTGATTCATAATGCAGTTGTATTCCA 666
consensus_729#1      ------------------------------------------------------------
                                                                                 

consensus_729#0      TAGTAAGTTAAACAAAG 683
consensus_729#1      -----------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)