These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_744#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [TTTATAATCCTTCATCTCGTATTTCTGTTTGGGAAAGACCAGATGATCTCATTGGTCGTCAAGATGTCGATAAAATGGTATCTACCCCACCAGATGCAGTAGTAACTACTAAACCAACACGTCAATCAGATACAAGTGAAAGCAGTGACGATGATCAACCAACACCGGCAAAAAAAAGTGAAACAAGAAGATACAAAAGCTGTAACACCAAAAGAAGAAGAAGAAAAAGAAAATAAAAAGACTATTGATATCGGGAAAGAAGCTGCAATAGAAGCTGAAGTACGAGCTGCTAGAGAAAGAGCAATTGTTCCTTTGGAAACAAGAATTAAATCATTTAGGGATATGCTTGCAGAAAAAGATGTATCCGCGTTTAGTACTTGGGAAAAGGAACTTCATAAAATTGTGTTTGATCCGCGATACTTACTTTTGACATCAAAGGAGAGGAAACAAGTTTTCGAGAAGTACGTCAAGGAGAGAGCAGAAGAAGAAAGGCGGGAAAAGAGGAACAAATTGAAAGAAAGAAAAGAACAATTTCAAAAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAACATGGGCGTGATGAACGGTTTAAGATGT] [+] EMBL BI946489 [TTTATAATCCTTCATCTCGTATTTCTGTTTGGGAAAGACCAGATGATCTCATTGGTCGTCAAGATGTCGATAAAATGGTATCTACCCCACCAGATGCAGTAGTAACTACTAAACCAACACGTCAATCAGATACAAGTGAAAGCAGTGACGATGATCAACCAACACCGGCAAAAAAAAGTGAAACAAGAAGATACAAAAGCTGTAACACCAAAAGAAGAAGAAGAAAAAGAAAATAAAAAGACTATTGATATCGGGAAAGAAGCTGCAATAGAAGCTGAAGTACGAGCTGCTAGAGAAAGAGCAATTGTTCCTTTGGAAACAAGAATTAAATCATTTAGGGATATGCTTGCAGAAAAAGATGTATCCGCGTTTAGTACTTGGGAAAAGGAACTTCATAAAATTGTGTTTGATCCGCGATACTTACTTTTGACATCAAAGGAGAGGAAACAAGTTTTCGAGAAGTACGTCAAGGAGAGAGCAGAAGAAGAAAGGCGGGAAAAGAGGAACAAATTGAAAGAAAGAAAAGAACAATTTCAAAAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAACATGGGCGTGATGAACGGTTTAAGATGT] consensusID : consensus_744#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [CGTATGTGGAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCTACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACTCCAAAGCAGAGTCATGAGAATGAACGAACTCGGTGAAAAAGGAATTCATAGCGATGCTACGTGAACACAAAGACATCGACAGGCATTCGCATTGGAGCGATTGTAAGAAAAAATTGGAATCTGATTGGAGATACAGAGTCGTAGAATCGGCAAGCACGAGAGAAGATTGGTTTAGGGATTACATTCGTATGCTAAAGGAGGAGAGGAAAAGAGGAACAAAATGAAAGAAAGAAAAGAACAATTTCAAAAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAACATGGGCGTGATGAACGGTTTAAGAATGTAG] [+] EMBL BI516417 [CGTATGTGGAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCTACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACTCCAAAGCAGAGTCATGAGAATGAACGAACTCGGTGAAAAAGGAATTCATAGCGATGCTACGTGAACACAAAGACATCGACAGGCATTCGCATTGGAGCGATTGTAAGAAAAAATTGGAATCTGATTGGAGATACAGAGTCGTAGAATCGGCAAGCACGAGAGAAGATTGGTTTAGGGATTACATTCGTATGCTAAAGGAGGAGAGGAAAAGAGGAACAAAATGAAAGAAAGAAAAGAACAATTTCAAAAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAACATGGGCGTGATGAACGGTTTAAGAATGTAG] consensusID : consensus_744#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence [ATGTGACGGTTCCTTATATACTTATGTGTTCTGAACTCTCCACTTCAGTCAGGAGGCAGGCAGGACAGGTTCCGTATGTGGAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCTACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACTCCAAAGCAGAGTCATGAGAATGAACGAACTCGGTATTTGTATATTACTCGTAATCCTCGTTACTTCAAAAGATTAACTTTTCCCCAAAAATCAAAACCAATTTCAAAAAAATTAAATTTATTATCAACAAAAGTGGGGTATCAATCCCTAATGGTAGCATCAATTCCAACAACATATTTGCAGATCTTGTTCTGTTTTCTGGAGATAAAGAACCGTTATTTTTCTTGAAAAAAAA] [+] EMBL BI504396 [ATGTGACGGTTCCTTATATACTTATGTGTTCTGAACTCTCCACTTCAGTCAGGAGGCAGGCAGGACAGGTTCCGTATGTGGAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCTACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACTCCAAAGCAGAGTCATGAGAATGAACGAACTCGGTATTTGTATATTACTCGTAATCCTCGTTACTTCAAAAGATTAACTTTTCCCCAAAAATCAAAACCAATTTCAAAAAAATTAAATTTATTATCAACAAAAGTGGGGTATCAATCCCTAATGGTAGCATCAATTCCAACAACATATTTGCAGATCTTGTTCTGTTTTCTGGAGATAAAGAACCGTTATTTTTCTTGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_744#1 ------------------------------------------------------------ consensus_744#2 ------------------------------------------------------------ consensus_744#0 TTTATAATCCTTCATCTCGTATTTCTGTTTGGGAAAGACCAGATGATCTCATTGGTCGTC 60 consensus_744#1 ------------------------------------------------------------ consensus_744#2 ---------------------------------ATGTGACGGTTCCTTATATACTTATGT 27 consensus_744#0 AAGATGTCGATAAAATGGTATCTACCCCACCAGATGCAGTAGTAACTACTAAACCAACAC 120 consensus_744#1 ---------------------------------------------CGT-------ATGTG 8 consensus_744#2 GTTCTGAACTCTCCACTTCAGTCAGGAGGCAGGCAGGACAGGTTCCGT-------ATGTG 80 consensus_744#0 GTCAATCAGATACAAGTGAAAGCAGTGACGATGATCAACCAACACCGGCAAAAAAAAGTG 180 ** * *** consensus_744#1 GAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCT 68 consensus_744#2 GAGTGGCTTGGTTCTGAAGCTGGTTGGTGGCATGGATGATGTCATCTACCATCCCCACCT 140 consensus_744#0 AAACAAGAAGATACAAAAGCTGTAACACCAAAAGAAGAAGAAGAAAAAGAAAATAAAAAG 240 * * * * ****** * * * * * * * * consensus_744#1 ACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACT-CCAAAGCAGAG 127 consensus_744#2 ACACTGCGTGGCACAGTTGGCACACCCTCGCGCGCCGCATTCTTTACT-CCAAAGCAGAG 199 consensus_744#0 ACTATTGATATCGGGAAAGAAGCTGCAATAGAAGCTGAAGTACGAGCTGCTAGAGAAAGA 300 ** * * * * * * ** * * * ** * * ** * consensus_744#1 TCATGAGAATGAACGAACTCGGTGAAAAAGGAATTCATAGCGATGCTACGTGAACACAAA 187 consensus_744#2 TCATGAGAATGAACGAACTCGGT---------ATTTGTA-TATTACT-CGTAATCCTCGT 248 consensus_744#0 GCAATTGTTCCTTTGGAAACAAGAATTAAATCATTTAGGGATATGCT-TGCAGAAAAAGA 359 ** * * * * *** * ** * consensus_744#1 GACATCGACAGGCATTCGCATTGGAGCGATTGTAAGAAAAAATTGGAATCTGATTGGAGA 247 consensus_744#2 TACTTCAAAAG--ATTAACTTTTCCCC----------AAAAATCAAAACCAATTTCAAAA 296 consensus_744#0 TGTATCCGCGTTTAGT-ACTTGGGAAAAGGAACTTCATAAAATTGTG-TTTGATCCGCGA 417 ** * * * * ***** * * consensus_744#1 TACAGAGTCGTAGAATCGGCAAGCACGAGAGAAGATTGGTTTAGGGATTACATTCGTATG 307 consensus_744#2 AAATTAAATTTATTATCAACAAAAGTGGGGTATCAATC-CCTAATGGTAGCATCA--ATT 353 consensus_744#0 TACTTACTTTTGACATCAAAGGAGAGGAAACAAGTTTTCGAGAAGTACGTCAAGGAGAGA 477 * * * *** * * * * ** * consensus_744#1 CTAAAGGAGGAGAGG----AAAAGAGGAACAAAATGAAAGAAAGAAAAGAACAATTTCAA 363 consensus_744#2 CCAACAACATATTTG----CAGATCTTGTTCTGTTTTCTGGAGATAAAGAACCGTT---A 406 consensus_744#0 GCAGAAGAAGAAAGGCGGGAAAAGAGGAACAAATTGAAAGAAAGAAAAGAACAATTTCAA 537 * * * * * * * * ******* ** * consensus_744#1 AAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAA 423 consensus_744#2 TTTTTCTTGAAAAAAAA------------------------------------------- 423 consensus_744#0 AAATTATTAGAAGAAGCTGGACTTCATGGAAAATCTTCATTTAGTGATTTTGCTCAAAAA 597 ** ** ** ** consensus_744#1 CATGGGCGTGATGAACGGTTTAAGAATGTAG 454 consensus_744#2 ------------------------------- consensus_744#0 CATGGGCGTGATGAACGGTTTAAGA-TGT-- 625 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |