These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 647 fasta sequence [GGGTGTAAACTACCCTCTTGATGTCTTCCTTGGATCCAATTTCATTTAAAAACTTCCCATATTTCGGAATGCAACGGGAAAAGTTATCGCTTTTCATCGTCAACATTGGATTACTGTTTTCCTAACCTAAAAGACAATGTTTGTCCGTTAAATATAATTAATCGTAAATTTCGTTAACTTCGAAAAGAAATATCATAGAAAAGTGTAAACAGTGAAACCTTTATTGTTTTTCTGAATTGTTTAAACCGTTTTGAGTGAAAATGATAATGACGACAATGACAGCTCTTTCTCTTTTTCAACCGCGATCGAAAGTATATACATCGAAATAATGAAATGCTCGTCTAGAAATAAAGCAAAAGAGAGAGAAAGAGAGAGAGAGAGAATAAATGACGAAGAAAAATATAAAAAAATTCGCTTTGTTCAGGAAGCTGTTCGACGCACGGGCGAGAAAATACTTCGGAGAAAAAAGAAGCGGCGCTATTCTTGCGTCCAGGTGTGAGCCTGTAACGCCAGTGTAAATATACAACACTTACGCCATTCCAAAGGAGCCTCTTCGAAAACTATTAACGTATTCCTCTTGTGTTGCGGCTTCGCCGACCATTTTTCCGTTCTGGCCCATTTCTCTTCCCATTGGATCATTTCGGCAC] [+] EMBL BI504302 [GGGTGTAAACTACCCTCTTGATGTCTTCCTTGGATCCAATTTCATTTAAAAACTTCCCATATTTCGGAATGCAACGGGAAAAGTTATCGCTTTTCATCGTCAACATTGGATTACTGTTTTCCTAACCTAAAAGACAATGTTTGTCCGTTAAATATAATTAATCGTAAATTTCGTTAACTTCGAAAAGAAATATCATAGAAAAGTGTAAACAGTGAAACCTTTATTGTTTTTCTGAATTGTTTAAACCGTTTTGAGTGAAAATGATAATGACGACAATGACAGCTCTTTCTCTTTTTCAACCGCGATCGAAAGTATATACATCGAAATAATGAAATGCTCGTCTAGAAATAAAGCAAAAGAGAGAGAAAGAGAGAGAGAGAGAATAAATGACGAAGAAAAATATAAAAAAATTCGCTTTGTTCAGGAAGCTGTTCGACGCACGGGCGAGAAAATACTTCGGAGAAAAAAGAAGCGGCGCTATTCTTGCGTCCAGGTGTGAGCCTGTAACGCCAGTGTAAATATACAACACTTACGCCATTCCAAAGGAGCCTCTTCGAAAACTATTAACGTATTCCTCTTGTGTTGCGGCTTCGCCGACCATTTTTCCGTTCTGGCCCATTTCTCTTCCCATTGGATCATTTCGGCAC] [+] EMBL BI504575 [GGGTGTAAACTACCCTCTTGATGTCTTCCTTGGATCCAATTTCATTTAAAAACTTCCCATATTTCGGAATGCAACGGGAAAAGTTATCGCTTTTCATCGTCAACATTGGATTACTGTTTTCCTAACCTAAAAGACAATGTTTGTCCGTTAAATATAATTAATCGTAAATTTCGTTAACTTCGAAAAGAAATATCATAGAAAAGTGTAAACAGTGAAACCTTTATTGTTTTTCTGAATTGTTTAAACCGTTTTGAGTGAAAATGATAATGACGACAATGACAGCTCTTTCTCTTTTTCAACCGCGATCGAAAGTATATACATCGAAATAATGAAATGCTCGTCTAGAAATAAAGCAAAAGAGAGAGAAAGAGAGAGAGAGAGAATAAATGACGAAGAAAAATATAAAAAAATTCGCTTTGTTCAGGAAGCTGTTCGACGCACGGGCGAGAAAATACTTCGGAGAAAAAAGAAGCGGCGCTATTCTTGCGTCCAGGTGTGAGCCTGTAACGCCAGTGTAAATATACAACACTTACGCCATTCCAAAGGAG ] consensusID : consensus_756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [TTCGAAGTATTGTCTTTCGAATATACGTTTTTCCAGTTGTATCCCGTCATTTAAGAATCGGCCATCGTACGTGAAAACACAAACATTCCTCATCTTCGTGTCAGCTTCTTTATTATTTTAGACCATCCCCTCTTACGACCACCATCTGCATGCATACCGACGCTGTTCCGGTACTCAAGGAAAATCGGCGATCAGCAACTTAAGCGGGTGTAAACTACCCTCTTGATGTCTTCCTTGGATCCAATTTCATTTAAAAACTTCCCATATTTCGGAATGCAACGGGAAAAGTTATCGCTTTTCATCGTCAACATTGGATTACTGTTTTCCTAACGCCATTCCAAAGGAGCCTCTTCGAAAAC] [-] EMBL BI507508 [TTCGAAGTATTGTCTTTCGAATATACGTTTTTCCAGTTGTATCCCGTCATTTAAGAATCGGCCATCGTACGTGAAAACACAAACATTCCTCATCTTCGTGTCAGCTTCTTTATTATTTTAGACCATCCCCTCTTACGACCACCATCTGCATGCATACCGACGCTGTTCCGGTACTCAAGGAAAATCGGCGATCAGCAACTTAAGCGGGTGTAAACTACCCTCTTGATGTCTTCCTTGGATCCAATTTCATTTAAAAACTTCCCATATTTCGGAATGCAACGGGAAAAGTTATCGCTTTTCATCGTCAACATTGGATTACTGTTTTCCTAACGCCATTCCAAAGGAGCCTCTTCGAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_756#0 GGGTGTAAACTACCCTCTTGATGTCTTCCTTGGATCCAATTTCATTTAAAAACTTCCCAT 60 consensus_756#1 ------------------------------------------------------------ consensus_756#0 ATTTCGGAATGCAACGGGAAAAGTTATCGCTTTTCATCGTCAACATTGGATTACTGTTTT 120 consensus_756#1 ------------------------------------------------------------ consensus_756#0 CCTAACCTAAAAGACAATGTTTGTCCGTTAAATATAATTAATCGTAAATTTCGTTAACTT 180 consensus_756#1 -------TTCGAAGTATTGTCTTTCGAATATACGTTTTTCCAGTTGTATCCCGTCA-TTT 52 * * * *** * ** ** * * ** * ** *** * ** consensus_756#0 CGAAAAGAAATATCATAGAAAAGTGTAAACAGTGAAACCTTTATTGTTTTTCTGAATTGT 240 consensus_756#1 AAGAATCGGCCATCGTA----CGTGAAAACA--CAAACATTCCTCATCTTCGTG------ 100 ** *** ** *** ***** **** ** * * ** ** consensus_756#0 TTAAACCGTTTTGAGTGAAAATGATAATGACGACAATGACAGCTCTTTCTCTTTTTCAAC 300 consensus_756#1 -TCAGCTTCTTT--------------------ATTATTTTAGACCATCCCCTCTTACGAC 139 * * * *** * ** ** * * * ** ** * ** consensus_756#0 CGCGATCGAAAGTATATACATCGAAATAATGAAATGCTCGTCTAGAAATAAAGCAAAAGA 360 consensus_756#1 CACCATCT---GCATGCATACCG----------ACGCTGTTCCGGTACTCAAGGAAAATC 186 * * *** * ** * * ** * *** ** * * * *** **** consensus_756#0 GA-GAGAAAGAGAGAGAGAGAGAATAAATGACGAAGAAAAATATAAAAAAATTCGCTTTG 419 consensus_756#1 GGCGATCAGCAACTTAAGCGGGTGTAAACTAC---------CCTCTTGATGTCTTCCTTG 237 * ** * * ** * * **** ** * * * * *** consensus_756#0 TTCAGGAAGCTGTTCGACGCACGGGCGAGAAAATACTTCGGAGAAAAAAGAAGCGGCGCT 479 consensus_756#1 -----GATCCAATTTCATTTAAAAACTTCCCA-TATTTCGGAATGCAACG----GGAAAA 287 ** * ** * * * * ** ****** ** * ** consensus_756#0 ATTCTTGCGTCCAGGTGTGAGCCTGTAACGCCAGTGTAAATATACAACACTTACGCCATT 539 consensus_756#1 GTTATCGCTTTTCATCGTCAACATTGGATTACTGTTT----------TCCTAACGCCATT 337 ** * ** * ** * * * * * ** * ** ******** consensus_756#0 CCAAAGGAGCCTCTTCGAAAACTATTAACGTATTCCTCTTGTGTTGCGGCTTCGCCGACC 599 consensus_756#1 CCAAAGGAGCCTCTTCGAAAAC-------------------------------------- 359 ********************** consensus_756#0 ATTTTTCCGTTCTGGCCCATTTCTCTTCCCATTGGATCATTTCGGCAC 647 consensus_756#1 ------------------------------------------------ |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |