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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1003 fasta sequence
[GATTTTGTTTTTTTACATTGACGATTGCAATGATTTGGATGAATTTGCGAGATATAGTCATTAAGGAAGATTCTTTTTAAGTTTATAATTTAATCACACTAAAAGTTCACTGATAAATAATTTTTCGAAGAATTTAAATTTTATATAAAAATAATTCTATTTTCAGATTGAAGATCCTTCGACAATTGCAAGAAGTATCGATTAATAATAAATTCAGTAGAAATAATCACTTTGAGAATTTTTTCAGGCCAACACTTGATTGCTTGTGATAATTAATTTCTCAAATTTTCACAGAACTTCACTGATAAATGGAAAATTATAATTGAAAATTATAAATTATAATATATAAAATTATAAAAATTCGAAATAATTAATCACTTTTCTCAACTCCTAATCAATTACAGACAATAAGTTTATTAAAACATAACTGTATCATCACAATTATAATTAAAAAAAAAAAATCGATCTTAATTTAAAACCAATCCACTGATCACAATCAA-GCAATGCAATGCAACGCCATCGATTATTACGAATCGAATTAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATAGAGCACAGGAGCACAAAGGTCGAGGATTCCACGATTTTTGCGGTGACACGCGTGTAAACAGATTCCAAGAAAGTCCAATGTCACGGCTCGACCACGAGGCCGAGCGCGAAAACAGTTTTAGTTCACTCGTGGCACACGAATACGTTCCTGAAACGCGGAATCGGGCACGCTTCCTCTTCCCTCCTCTCTACTTCCGGCGCCCTCGTGATCGTGATAACTTCTGGATGTTATCCGACGGAACGATCGGATGTTTGCAACTCGCCACATTCGTAAAACTCTTATCCAACCGTAGTCGCGTCATGACGGCCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC]
[+] EMBL BI503997 [GATTTTGTTTTTTTACATTGACGATTGCAATGATTTGGATGAATTTGCGAGATATAGTCATTAAGGAAGATTCTTTTTAAGTTTATAATTTAATCACACTAAAAGTTCACTGATAAATAATTTTTCGAAGAATTTAAATTTTATATAAAAATAATTCTATTTTCAGATTGAAGATCCTTCGACAATTGCAAGAAGTATCGATTAATAATAAATTCAGTAGAAATAATCACTTTGAGAATTTTTTCAGGCCAACACTTGATTGCTTGTGATAATTAATTTCTCAAATTTTCACAGAACTTCACTGATAAATGGAAAATTATAATTGAAAATTATAAATTATAATATATAAAATTATAAAAATTCGAAATAATTAATCACTTTTCTCAACTCCTAATCAATTACAGACAATAAGTTTATTAAAACATAACTGTATCATCACAATTATAATTAAAAAAAAAAAATCGATCTTAATTTAAAACCAATCCACTGATCACAATCAATGCAATGCAATGCAACGCCATCGATTATTACGAATCGAATTAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATA ]
[-] EMBL BI506444 [ AAAAAATCGATCTTAATTTAAAACCAATCCACTGATCACAAT CAATGCAATGCAACGCCATCGATTATTACGAATCGAATTAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATAGAGCACAGGAGCACAAAGGTCGAGGATTCCACGATTTTTGCGGTGACACGCGTGTAAACAGATTCCAAGAAAGTCCAATGTCACGGCTCGACCACGAGGCCGAGCGCGAAAACAGTTTTAGTTCACTCGTGGCACACGAATACGTTCCTGAAACGCGGAATCGGGCACGCTTCCTCTTCCCTCCTCTCTACTTCCGGCGCCCTCGTGATCGTGATAACTTCTGGATGTTATCCGACGGAACGATCGGATGTTTGCAACTCGCCACATTCGTAAAACTCTTATCCAACCGTAGTCGCGTCATGACGGCCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC]
consensusID : consensus_782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[ATCACTTTCCATCAGATTCATCATATTAAATTCTACATGAAACGAATGGTGGAAAGGCAAGAGAATTTTTACACGAGGATATGCCGACACAAAAGAGTTATTGTTCCGCTCGATATGTTTCTTCGAATAACATCTCTCCCTGCGCAGAAATGACTTGTCGAGCATAGTTTTGCACATTCTCGGTCAGAAATATCCTTTAGTCGCGGAATAATCTTGCCGCGGCGAACATCCCGCCACGTATCTCCATGAAAAGACCCTTTCACAGTGAAATAATAATCGCCCACCGACCAAAGCTCCCTCTTGCGACGATTTTTCGACAAATTGAAAAGTTTCACGCAGCGTCGTAGCGCGTGATGGGCAATTCACTTTCGCAATGCATAATTGATTTCTGCGAAGGATACCAGAAAGAAAGTAATGATCGATCAATTATTTTTAACATTCTCTCTCTTCTATCTTCAGCCTCGCCACATTCGTAAAACTCTTATCCAACCGTAGCCGCGTCATGACGGTCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC]
[-] EMBL BI505305 [ATCACTTTCCATCAGATTCATCATATTAAATTCTACATGAAACGAATGGTGGAAAGGCAAGAGAATTTTTACACGAGGATATGCCGACACAAAAGAGTTATTGTTCCGCTCGATATGTTTCTTCGAATAACATCTCTCCCTGCGCAGAAATGACTTGTCGAGCATAGTTTTGCACATTCTCGGTCAGAAATATCCTTTAGTCGCGGAATAATCTTGCCGCGGCGAACATCCCGCCACGTATCTCCATGAAAAGACCCTTTCACAGTGAAATAATAATCGCCCACCGACCAAAGCTCCCTCTTGCGACGATTTTTCGACAAATTGAAAAGTTTCACGCAGCGTCGTAGCGCGTGATGGGCAATTCACTTTCGCAATGCATAATTGATTTCTGCGAAGGATACCAGAAAGAAAGTAATGATCGATCAATTATTTTTAACATTCTCTCTCTTCTATCTTCAGCCTCGCCACATTCGTAAAACTCTTATCCAACCGTAGCCGCGTCATGACGGTCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGGTGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_782#0 GATTTTGTTTTTTTACATTGACGATTGCAATGATTTGGATGAATTTGCGAGATATAGTCA 60
consensus_782#1 ------------------------------------------------------------
consensus_782#0 TTAAGGAAGATTCTTTTTAAGTTTATAATTTAATCACACTAAAAGTTCACTGATAAATAA 120
consensus_782#1 ------------------------------------------------------------
consensus_782#0 TTTTTCGAAGAATTTAAATTTTATATAAAAATAATTCTATTTTCAGATTGAAGATCCTTC 180
consensus_782#1 ------------------------------------------------------------
consensus_782#0 GACAATTGCAAGAAGTATCGATTAATAATAAATTCAGTAGAAATAATCACTTTGAGAATT 240
consensus_782#1 ------------------------------------------------------------
consensus_782#0 TTTTCAGGCCAACACTTGATTGCTTGTGATAATTAATTTCTCAAATTTTCACAGAACTTC 300
consensus_782#1 ------------------------------------------------------------
consensus_782#0 ACTGATAAATGGAAAATTATAATTGAAAATTATAAATTATAATATATAAAATTATAAAAA 360
consensus_782#1 ------------------------------------------------------------
consensus_782#0 TTCGAAATAATTAATCACTTTTCTCAACTCCTAATCAATTACAGACAATAAGTTTATTAA 420
consensus_782#1 ---ATCACTTTCCATCAGATTCATCATATTAAATTCTACATGAAACGAATGGTGGA--AA 55
* * **** ** *** * * ** * * ** * ** * **
consensus_782#0 AACATAACTGTATCATCACAATTATA-ATTAAAAAAAAAAAATCGATCTTAATTTAAAAC 479
consensus_782#1 GGCAAGAGAATTTTTACACGAGGATATGCCGACACAAAAGAGTTATTGTTCCGCTCGATA 115
** * * * *** * *** * * **** * * * ** * *
consensus_782#0 CAATCCACTGATCACAATCAAGCAATGCAATGCAACGCCATCGATTATTACGAATCGAAT 539
consensus_782#1 TGTTTCTTCGAATAACATCTCTCCCTGCGCAGAAATGAC-TTGTCGAGCATAGTTTTG-- 172
* * ** * *** * *** * ** * * * * * * *
consensus_782#0 TAAATCCTCGGTCAGTTGTATAATTCACAGTTGCGATCCAGCGATAGTGATCGATAGAGC 599
consensus_782#1 CACATTCTCGGTCAGAAATATCCTTTA--GTCGCGG---AATAATCTTGCCGCGGCGAAC 227
* ** ********* *** ** * ** *** * ** ** ** *
consensus_782#0 ACAGGAGCACAAAGGTCGAGGATTCCACGATTTTTGCGGTGACACGCGTGTAAACAGATT 659
consensus_782#1 ATCCCGCCACGTATCTCCATGAAAAGACC-CTTTCACAGTGAAATA---ATAATCGCCCA 283
* *** * ** * ** ** *** * **** * *** *
consensus_782#0 CCAAG-AAAGTCCAATGTCACGGCTCGACCACGAGGCCGAGCGCGAAAACAGTTTTAGTT 718
consensus_782#1 CCGACCAAAGCTCCCTCTTGCGA--CGATTTTTCGACAAATTG----AAAAGTTTCACGC 337
** * **** * * * ** *** * * * * ** ***** *
consensus_782#0 CAC-TCGTGGCACACGAATACGTTCCTGAAACGCGGAATCGGGCACGCTTCCTCTTCCCT 777
consensus_782#1 AGCGTCGTAGCGCGTGA-TGGGCAATTCACTTTCGCAAT---GCATAATTGATTT----- 388
* **** ** * ** * * * * ** *** *** ** * *
consensus_782#0 CCTCTCTACTTCCGGCGCCCTCGTGATCGTGATAACTTCTGGATGTTATCCGACGGAA-C 836
consensus_782#1 -----CTGCGAAGGATACCAGAAAGAAAGTAATGATCGATCAATTATTTTTAACATTCTC 443
** * * ** ** ** ** * * ** * * ** *
consensus_782#0 GATCGGATGTTTGCAAC-TCGCCACATTCGTAAAACTCTTATCCAACCGTAGTCGCGTCA 895
consensus_782#1 TCTCTTCTATCTTCAGCCTCGCCACATTCGTAAAACTCTTATCCAACCGTAGCCGCGTCA 503
** * * * ** * ********************************** *******
consensus_782#0 TGACGGCCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGG 955
consensus_782#1 TGACGGTCGCACGTACGGCATCCCGAAGCGAGATGAAGCGTGGACACCCTCGACAAGGGG 563
****** *****************************************************
consensus_782#0 TGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC 1003
consensus_782#1 TGGGATACGCGTGTCGAGTGCCGATTCAAGGGAAAATTATGGAATGGC 611
************************************************
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |