|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_793#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence
[TCGGCGATTTATCACGCAATGATAAGGGTGGAAAGCGATGATCGATGATTCTCGATCGTTTCTTTCTTACACGTTCTCGCTTCTGAGAGTTAGTTGACAACGGAAGAGAAGATTTCTTTTTCCCCCCCCTCCCACTTCAAGATATTATTATTATTATTATTATTTTGCCAGTGAGAGGATATCGAGGGTATTCAACACGATTAAAAAAAAAAAGAACAAATTCTTGACAATAATTTGAAAATTAATAATTCGATTGCTCGGAGAGATTACTCGATATCGAAATATTCGATCGATATCGTCACATATCACTTTGAAGAATGAAAAAAATGTCGAATCACTTTTTTGTCATTGGAGATCGAAACTTTCTTCGTTGTCGATCCTCGAAACGGAGGATTCGGAACGAGTTGTAATAGAAATGAACGAAAGTGTGTAAGTTTTGAAAAGAGAAAGGAATATATCGTGTTCGCGATAAGGGAAGGAGCGTGGAAAGGAATGAGGAGATGATGAAAGGCGAAGGGACGAAAGAGGGAAAGAAAGAGGTACGTACGATCGAGGATCATCGATCACGGATTCGTTCTTTGCTCAGTATTTTAGGCTGTAAATGAATAAACCGATACATTCGATGTAACGATTAAATGAAATCGTAGAGTTACTTTGTAACGAGAGAGGAGCAGCGGCGCAGCGCTAAAGAGAAGCAGCTTTTTAATTACGAATAGCAATTATCTTTGATTATTACCAGTAGTACACGCAGCACACGTGGATTTTCGCACTTAGGT]
[+] EMBL BI509702 [TCGGCGATTTATCACGCAATGATAAGGGTGGAAAGCGATGATCGATGATTCTCGATCGTTTCTTTCTTACACGTTCTCGCTTCTGAGAGTTAGTTGACAACGGAAGAGAAGATTTCTTTTTCCCCCCCCTCCCACTTCAAGATATTATTATTATTATTATTATTTTGCCAGTGAGAGGATATCGAGGGTATTCAACACGATTAAAAAAAAAAAGAACAAATTCTTGACAATAATTTGAAAATTAATAATTCGATTGCTCGGAGAGATTACTCGATATCGAAATATTCGATCGATATCGTCACATATCACTTTGAAGAATGAAAAAAATGTCGAATCACTTTTTTGTCATTGGAGATCGAAACTTTCTTCGTTGTCGATCCTCGAAACGGAGGATTCGGAACGAGTTGTAATAGAAATGAACGAAAGTGTGTAAGTTTTGAAAAGAGAAAGGAATATATCGTGTTCGCGATAAGGGAAGGAGCGTGGAAAGGAATGAGGAGATGATGAAAGGCGAAGGGACGAAAGAGGGAAAGAAAGAGGTACGTACGATCGAGGATCATCGATCACGGATTCGTTCT ]
[+] EMBL BI512170 [ AGGATTCGGAACGAGTTGTAATAGAAATGAACGAAAGTGTGTAAGTTTTGAAAAGAGAAAGGAATATATCGTGTTCGCGATAAGGGAAGGAGCGTGGAAAGGAATGAGGAGATGATGAAAGGCGAAGGGACGAAAGAGGGAAAGAAAGAGGTACGTACGATCGAGGATCATCGATCACGGATTCGTTCTTTGCTCAGTATTTTAGGCTGTAAATGAATAAACCGATACATTCGATGTAACGATTAAATGAAATCGTAGAGTTACTTTGTAACGAGAGAGGAGCAGCGGCGCAGCGCTAAAGAGAAGCAGCTTTTTAATTACGAATAGCAATTATCTTTGATTATTACCAGTAGTACACGCAGCACACGTGGATTTTCGCACTTAGGT]
consensusID : consensus_793#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence
[GCGTATACACGTTGTAAAAAAAAAAAGGGAAAAAAAAAAAAATTTTTTACAAGATATATCTCGAATTAATCGATAACTAACTAAGCGTACGTTGGTTTCTCTTCCTCACTTTTCGTTCTCGACCTCCCAAAGAGTGTTTACTTTTTTTCACCCCGTTCGGCGATTTATCACGCAATGATAAGGGTGGAAAGCGATGATCGATGATTCTCGATCGTTTCTTTCTTACACGTTCTCGCTTCTGAGAATTAGTTGACAACGGAAGAGAAGATTTGTTTTTTTCCCCCCACTTTATATTATTATTATTTTGCCAGTGAGAGGATATCGAGGGTATTCAACACGATTAAAAAAA]
[+] EMBL BI503907 [GCGTATACACGTTGTAAAAAAAAAAAGGGAAAAAAAAAAAAATTTTTTACAAGATATATCTCGAATTAATCGATAACTAACTAAGCGTACGTTGGTTTCTCTTCCTCACTTTTCGTTCTCGACCTCCCAAAGAGTGTTTACTTTTTTTCACCCCGTTCGGCGATTTATCACGCAATGATAAGGGTGGAAAGCGATGATCGATGATTCTCGATCGTTTCTTTCTTACACGTTCTCGCTTCTGAGAATTAGTTGACAACGGAAGAGAAGATTTGTTTTTTTCCCCCCACTTTATATTATTATTATTTTGCCAGTGAGAGGATATCGAGGGTATTCAACACGATTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_793#0 ------------------------------------------------------------
consensus_793#1 GCGTATACACGTTGTAAAAAAAAAAAGGGAAAAAAAAAAAAATTTTTTACAAGATATATC 60
consensus_793#0 ------------------------------------------------------------
consensus_793#1 TCGAATTAATCGATAACTAACTAAGCGTACGTTGGTTTCTCTTCCTCACTTTTCGTTCTC 120
consensus_793#0 ------------------------------------TCGGCGATTTATCACGCAATGATA 24
consensus_793#1 GACCTCCCAAAGAGTGTTTACTTTTTTTCACCCCGTTCGGCGATTTATCACGCAATGATA 180
************************
consensus_793#0 AGGGTGGAAAGCGATGATCGATGATTCTCGATCGTTTCTTTCTTACACGTTCTCGCTTCT 84
consensus_793#1 AGGGTGGAAAGCGATGATCGATGATTCTCGATCGTTTCTTTCTTACACGTTCTCGCTTCT 240
************************************************************
consensus_793#0 GAGAGTTAGTTGACAACGGAAGAGAAGATTTCTTTTTCCCCCCCCTCCCACTTCAAGATA 144
consensus_793#1 GAGAATTAGTTGACAACGGAAGAGAAGATTTGTTTTTTTCCCCC----CACTTTA----- 291
**** ************************** ***** ***** ***** *
consensus_793#0 TTATTATTATTATTATTATTTTGCCAGTGAGAGGATATCGAGGGTATTCAACACGATTAA 204
consensus_793#1 -------TATTATTATTATTTTGCCAGTGAGAGGATATCGAGGGTATTCAACACGATTAA 344
*****************************************************
consensus_793#0 AAAAAAAAAGAACAAATTCTTGACAATAATTTGAAAATTAATAATTCGATTGCTCGGAGA 264
consensus_793#1 AAAAA------------------------------------------------------- 349
*****
consensus_793#0 GATTACTCGATATCGAAATATTCGATCGATATCGTCACATATCACTTTGAAGAATGAAAA 324
consensus_793#1 ------------------------------------------------------------
consensus_793#0 AAATGTCGAATCACTTTTTTGTCATTGGAGATCGAAACTTTCTTCGTTGTCGATCCTCGA 384
consensus_793#1 ------------------------------------------------------------
consensus_793#0 AACGGAGGATTCGGAACGAGTTGTAATAGAAATGAACGAAAGTGTGTAAGTTTTGAAAAG 444
consensus_793#1 ------------------------------------------------------------
consensus_793#0 AGAAAGGAATATATCGTGTTCGCGATAAGGGAAGGAGCGTGGAAAGGAATGAGGAGATGA 504
consensus_793#1 ------------------------------------------------------------
consensus_793#0 TGAAAGGCGAAGGGACGAAAGAGGGAAAGAAAGAGGTACGTACGATCGAGGATCATCGAT 564
consensus_793#1 ------------------------------------------------------------
consensus_793#0 CACGGATTCGTTCTTTGCTCAGTATTTTAGGCTGTAAATGAATAAACCGATACATTCGAT 624
consensus_793#1 ------------------------------------------------------------
consensus_793#0 GTAACGATTAAATGAAATCGTAGAGTTACTTTGTAACGAGAGAGGAGCAGCGGCGCAGCG 684
consensus_793#1 ------------------------------------------------------------
consensus_793#0 CTAAAGAGAAGCAGCTTTTTAATTACGAATAGCAATTATCTTTGATTATTACCAGTAGTA 744
consensus_793#1 ------------------------------------------------------------
consensus_793#0 CACGCAGCACACGTGGATTTTCGCACTTAGGT 776
consensus_793#1 --------------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |