Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 799 cluster # 799       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_799#0 length = 620 sequences # 2  
consensus_799#1 length = 503 sequences # 1  

consensusID : consensus_799#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 620
fasta sequence
                              [TCTTGACTTCAAGATTTACCGGACATAATTGATTGAGTAGGAAATAGTCTTTGGCTATTATCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGATTTCATTGGGAAAAAGTTGCAAACGTGCGAAAGGTATAAATGAGTCGAGCGGCGAACGCGTGCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTCTGGCGCATCCCACTTGCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGAGCCCACGACCGCCCTCCGTCGAGGACGACGAAGACGGACACCTTGTTTACCAATCCGGCGACATCCTGGCAAATAGATATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTATAGGGAAGCCGCGAAGCTTC]

[+] EMBL BI946415             [TCTTGACTTCAAGATTTACCGGACATAATTGATTGAGTAGGAAATAGTCTTTGGCTATTATCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGATTTCATTGGGAAAAAGTTGCAAACGTGCGAAAGGTATAAATGAGTCGAGCGGCGAACGCGTGCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTCTGGCGCATTCCACTTGCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGAGCCCACGACCGCCCTCCGTCGAGGACGACGAATACGGACACCTTGTTTACCAATTCGGCGACATTCTGGCAAATAGATATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAAGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTTTAGGGAAGCCGCGAAGCTTC]
[+] EMBL BI503895             [                                                                                                                                GAAAAAGTTGCAAACGTGCGAAAGGTATAAATGAGTCGAGCGGCGAACGCGTGCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTCTGGCGCATCCCACTTCCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGAGCCCACGACCGCCCTCCGTCGAGGACGACGAAGACGGCCACCTTGTTTACCAATCCGGCGACATCCTGGCAAATAGATATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTATAGGGAAGCCGCGAAGCT  ]


>consensus_799#0 TCTTGACTTCAAGATTTACCGGACATAATTGATTGAGTAGGAAATAGTCTTTGGCTATTA TCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGAT TTCATTGGGAAAAAGTTGCAAACGTGCGAAAGGTATAAATGAGTCGAGCGGCGAACGCGT GCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCA TCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCG TCTGGCGCATCCCACTTGCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTC GACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGAGCCCACGACC GCCCTCCGTCGAGGACGACGAAGACGGACACCTTGTTTACCAATCCGGCGACATCCTGGC AAATAGATATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGT TAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTA TAGGGAAGCCGCGAAGCTTC



consensusID : consensus_799#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence
                              [GTCTTTGGCTATTATCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGATTTCATTGGGAAAAAGTTGCAAACGTGCGAAAGCGGCGAACGCGTGCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTCTGGCGCATCCCACTTCCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTATAGGGAAGCCGCGAAGCTCGAAATAAACGCCTTAGAGAAAATTG]

[+] EMBL BI504086             [GTCTTTGGCTATTATCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGATTTCATTGGGAAAAAGTTGCAAACGTGCGAAAGCGGCGAACGCGTGCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTCTGGCGCATCCCACTTCCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTATAGGGAAGCCGCGAAGCTCGAAATAAACGCCTTAGAGAAAATTG]


>consensus_799#1 GTCTTTGGCTATTATCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTT TTATCCGAAATGATTTCATTGGGAAAAAGTTGCAAACGTGCGAAAGCGGCGAACGCGTGC TGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCATC GCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCGTC TGGCGCATCCCACTTCCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTCGA CCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGATAAAGTACTGGC CACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGTTAAGGACTTGCAAATGGATCA CGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTATAGGGAAGCCGCGAAGCTCGA AATAAACGCCTTAGAGAAAATTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_799#0      TCTTGACTTCAAGATTTACCGGACATAATTGATTGAGTAGGAAATAGTCTTTGGCTATTA 60
consensus_799#1      ----------------------------------------------GTCTTTGGCTATTA 14
                                                                   **************

consensus_799#0      TCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGAT 120
consensus_799#1      TCTGAAAAAGCGATTTGAAAAATATACGTGAGTGCTGATGTGGGTTTTATCCGAAATGAT 74
                     ************************************************************

consensus_799#0      TTCATTGGGAAAAAGTTGCAAACGTGCGAAAGGTATAAATGAGTCGAGCGGCGAACGCGT 180
consensus_799#1      TTCATTGGGAAAAAGTTGCAAACGTGCGAAAG----------------CGGCGAACGCGT 118
                     ********************************                ************

consensus_799#0      GCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCA 240
consensus_799#1      GCTGAGATCGCGTCAGCACGACCGCGGAACCAGCCAGGAAAGGCGTTACAAGCGGAGCCA 178
                     ************************************************************

consensus_799#0      TCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCG 300
consensus_799#1      TCGCCGATCGCCGAGCAGCGGCCGACAACACGGTGGTCATCGTGATCGCGATCGTGATCG 238
                     ************************************************************

consensus_799#0      TCTGGCGCATCCCACTTGCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTC 360
consensus_799#1      TCTGGCGCATCCCACTTCCTCTAGACGTGCAAGGATCTACCGTCATCATGCCTCGTCGTC 298
                     ***************** ******************************************

consensus_799#0      GACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGAGCCCACGACC 420
consensus_799#1      GACCAGCCAGGACCGGCATAGGCATCGCTCGCCATCCTCAAGAAGTCAGA---------- 348
                     **************************************************          

consensus_799#0      GCCCTCCGTCGAGGACGACGAAGACGGACACCTTGTTTACCAATCCGGCGACATCCTGGC 480
consensus_799#1      ------------------------------------------------------------
                                                                                 

consensus_799#0      AAATAGATATAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGT 540
consensus_799#1      ---------TAAAGTACTGGCCACCCTAGGAGAGGGTACTTTTGGAAAAGTTGTCAAGGT 399
                              ***************************************************

consensus_799#0      TAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTA 600
consensus_799#1      TAAGGACTTGCAAATGGATCACGTGATGGCGCTGAAAATCATCAAGAACGTAGAGAAGTA 459
                     ************************************************************

consensus_799#0      TAGGGAAGCCGCGAAGCTTC------------------------ 620
consensus_799#1      TAGGGAAGCCGCGAAGCTCGAAATAAACGCCTTAGAGAAAATTG 503
                     ******************                          




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)