Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Apis mellifera
cluster # 802 cluster # 802       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_802#0 length = 725 sequences # 2  
consensus_802#1 length = 531 sequences # 1  

consensusID : consensus_802#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 725
fasta sequence
                              [TTTAAATGTATATTAGAAGGTAATTCAACCAACTCCAGAACTTTCTCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGGTAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTCTCTTGGTTCCGACTCGGTCTTCCTAAGAAACGATGAACAAGAAGAGTGTCTCGACACAGAGGATGAAGTGTCTGGATTTTCGACCGATTCTGAAACAGCCGGGCCAAGTTGTCGACGGTTTCTTCGAGTACCCTCGAAAAAGAAGAAAACAATTGAAAAATGGGATGGTTGTGCTGGATGTGTTCCTAGACGGCGATCTGGAGGCAAACTTTGTCAAGCTTGTCATAGTATTAGTGCAGCTGTTGAAACCTCTAGGTCTCAGACAGTTTCTACGAGCACCAGCAGTCAGACTAGTCTCGGTTCTCCTCCGTGTTCACCAACTATCGAACTCAGACATAGACCACCACCGACACCATTGCCATCAAGTCCACCTATTTGGTCTCAAGAAACGCTCTTTTAATTCTCTAAAAACTTGCCGTTTTCATAAATGATTAGTAACCGCACAAATATATTCCTTTCATAAGAAAAACGAACAAAGAAAATGAAGAACAACTGTAAAAAATAATTGATAAAATAATTTTGACTATATTAAATGAAATTACAAAAACAAAAAATACAAA]

[+] EMBL BI516427             [TTTAAATGTATATTAGAAGGTAATTCAACCAACTCCAGAACTTTCTCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGGTAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTCTCTTGGTTCCGACTCGGTCTTCCTAAGAAACGATGAACAAGAAGAGTGTCTCGACACAGAGGATGAAGTGTCTGGATTTTCGACCGATTCTGAAACAGCCGGGCCAAGTTGTCGACGGTTTCTTCGAGTACCCTCGAAAAAGAAGAAAACAATTGAAAAATGGGATGGTTGTGCTGGATGTGTTCCTAGACGGCGATCTGGAGGCAAACTTTGTCAAGCTTGTCATAGTATTAGTG                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BI516070             [                                                                                                                                                                                                                                                 TTTTCGACCGATTCTGAAACAGCCGGGCCAAGTTGTCGACGGTTTCTTCGAGTACCCTCGAAAAAGAAGAAAACAATTGAAAAATGGGATGGTTGTGCTGGATGTGTTCCTAGACGGCGATCTGGAGGCAAACTTTGTCAAGCTTGTCATAGTATTAGTGCAGCTGTTGAAACCTCTAGGTCTCAGACAGTTTCTACGAGCACCAGCAGTCAGACTAGTCTCGGTTCTCCTCCGTGTTCACCAACTATCGAACTCAGACATAGACCACCACCGACACCATTGCCATCAAGTCCACCTATTTGGTCTCAAGAAACGCTCTTTTAATTCTCTAAAAACTTGCCGTTTTCATAAATGATTAGTAACCGCACAAATATATTCCTTTCATAAGAAAAACGAACAAAGAAAATGAAGAACAACTGTAAAAAATAATTGATAAAATAATTTTGACTATATTAAATGAAATTACAAAAACAAAAAATACAAA]


>consensus_802#0 TTTAAATGTATATTAGAAGGTAATTCAACCAACTCCAGAACTTTCTCCATGCACAAGCGA AGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGGTAAAAGAGCACCATT GGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTCTCTTGGTTCCGACTC GGTCTTCCTAAGAAACGATGAACAAGAAGAGTGTCTCGACACAGAGGATGAAGTGTCTGG ATTTTCGACCGATTCTGAAACAGCCGGGCCAAGTTGTCGACGGTTTCTTCGAGTACCCTC GAAAAAGAAGAAAACAATTGAAAAATGGGATGGTTGTGCTGGATGTGTTCCTAGACGGCG ATCTGGAGGCAAACTTTGTCAAGCTTGTCATAGTATTAGTGCAGCTGTTGAAACCTCTAG GTCTCAGACAGTTTCTACGAGCACCAGCAGTCAGACTAGTCTCGGTTCTCCTCCGTGTTC ACCAACTATCGAACTCAGACATAGACCACCACCGACACCATTGCCATCAAGTCCACCTAT TTGGTCTCAAGAAACGCTCTTTTAATTCTCTAAAAACTTGCCGTTTTCATAAATGATTAG TAACCGCACAAATATATTCCTTTCATAAGAAAAACGAACAAAGAAAATGAAGAACAACTG TAAAAAATAATTGATAAAATAATTTTGACTATATTAAATGAAATTACAAAAACAAAAAAT ACAAA



consensusID : consensus_802#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence
                              [CAGTACCATGTTTGCCGCTTCATTCTACGTTTTCAACTAAATACACTATCCATGATGAACTCTGGGATCTTTATTATCCCATTGATATTCAAGTAATTCAACCAACTCCAGAACTTTCTCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGGTAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTTATCGATATATTTATATAGAATACATATTATATTTATATAGAATACATAATTTTGAATAAAATTTTAAAAGATCTGGTTGGTCGATAATTTTGGAAAAATAGTAGAGAAGAAAAGATTCAAATATAAAATTTTCGATTTAACTAATTATTATTTTCCAAGATATTAATAAAATTCATATATTATTATCTATCTAGATATTATTAATATAAATTAATCTTTGCTATAAAAATAACGTCATCGATTGTCGAATAACCATTGATATTATTATATGTTAAAAAGTATCCTAAAAATAT]

[+] EMBL BI513308             [CAGTACCATGTTTGCCGCTTCATTCTACGTTTTCAACTAAATACACTATCCATGATGAACTCTGGGATCTTTATTATCCCATTGATATTCAAGTAATTCAACCAACTCCAGAACTTTCTCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGGTAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTTATCGATATATTTATATAGAATACATATTATATTTATATAGAATACATAATTTTGAATAAAATTTTAAAAGATCTGGTTGGTCGATAATTTTGGAAAAATAGTAGAGAAGAAAAGATTCAAATATAAAATTTTCGATTTAACTAATTATTATTTTCCAAGATATTAATAAAATTCATATATTATTATCTATCTAGATATTATTAATATAAATTAATCTTTGCTATAAAAATAACGTCATCGATTGTCGAATAACCATTGATATTATTATATGTTAAAAAGTATCCTAAAAATAT]


>consensus_802#1 CAGTACCATGTTTGCCGCTTCATTCTACGTTTTCAACTAAATACACTATCCATGATGAAC TCTGGGATCTTTATTATCCCATTGATATTCAAGTAATTCAACCAACTCCAGAACTTTCTC CATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGGTA AAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTTAT CGATATATTTATATAGAATACATATTATATTTATATAGAATACATAATTTTGAATAAAAT TTTAAAAGATCTGGTTGGTCGATAATTTTGGAAAAATAGTAGAGAAGAAAAGATTCAAAT ATAAAATTTTCGATTTAACTAATTATTATTTTCCAAGATATTAATAAAATTCATATATTA TTATCTATCTAGATATTATTAATATAAATTAATCTTTGCTATAAAAATAACGTCATCGAT TGTCGAATAACCATTGATATTATTATATGTTAAAAAGTATCCTAAAAATAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_802#0      ------------------------------------------------------------
consensus_802#1      CAGTACCATGTTTGCCGCTTCATTCTACGTTTTCAACTAAATACACTATCCATGATGAAC 60
                                                                                 

consensus_802#0      ---------------TTTAAATGTATATTAGAAGGTAATTCAACCAACTCCAGAACTTTC 45
consensus_802#1      TCTGGGATCTTTATTATCCCATTGATATT--CAAGTAATTCAACCAACTCCAGAACTTTC 118
                                     *   **  *****   * **************************

consensus_802#0      TCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGG 105
consensus_802#1      TCCATGCACAAGCGAAGCAGGTCTTTATGCAAAAAACGTGATGATCACAGGGATTAACGG 178
                     ************************************************************

consensus_802#0      TAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGTC 165
consensus_802#1      TAAAAGAGCACCATTGGCTTCTATGGGCAGTGTTGATCCTCCAGAAGCAGATTCGAGGT- 237
                     *********************************************************** 

consensus_802#0      TCTTGGTTCCGACTCGGTCTTCCTAAGAAACGATGAACAAGAAGAGTGTCTCGACACAGA 225
consensus_802#1      ------TATCGATATA-TTTATATAGAATAC-----------ATATTATATTTATATAGA 279
                           *  ***     * *   **  * **           * * * * *  * * ***

consensus_802#0      GGATGAAGTGTCTGGATTTTCGACCGATTCTGAAACAGCCGGGCCAAGTTGTCGACGGTT 285
consensus_802#1      ATACATA--------ATTTTGAATAAAATTTTAAAAGATCTGGTTG----GTCGATAATT 327
                       *   *        *****  *   * * * ***    * **       *****   **

consensus_802#0      TCTTCGAGTACCCTCGAAAAAGAAGAAAACAATTGAAAAATGGGATGGTTG--TGCTGGA 343
consensus_802#1      T-TGGAAAAATAGTAGAGAAGAAAAGATTCAAATATAAAATTTTCGATTTAACTAATTAT 386
                     * *   *  *   * ** **  **  *  *** *  *****       **   *  *   

consensus_802#0      TGTGTTCCTAGACGGCGATCTGGAGGCAAACTTTGTCAAGCTTGTCATAGTATTAGTGCA 403
consensus_802#1      TATTTTCCAAGATATTAATA-AAATTCATATATTATTA--TCTATCTAGATATTATTAAT 443
                     * * **** ***     **    *  ** *  ** * *    * **    ***** *   

consensus_802#0      GCTGTTGAAACCTCTAGGTCTCAGACAGTTTCTACGAGCACCAGCAGTCAGACTAGTCTC 463
consensus_802#1      ATAAATTAA---TCTTTGCTATAAAAA-----TAACGTCATCGATTGTCGAATAACCATT 495
                          * **   ***  *    * * *     **    ** *    ***  *  *   * 

consensus_802#0      GGTTCTCCTCCGTGTTCACCAACTATCGAACTCAGACATAGACCACCACCGACACCATTG 523
consensus_802#1      GATATTATTATATGTTAAAAAGTATCCTAA---AAATAT--------------------- 531
                     * *  *  *   **** *  *     * **   * * **                     

consensus_802#0      CCATCAAGTCCACCTATTTGGTCTCAAGAAACGCTCTTTTAATTCTCTAAAAACTTGCCG 583
consensus_802#1      ------------------------------------------------------------
                                                                                 

consensus_802#0      TTTTCATAAATGATTAGTAACCGCACAAATATATTCCTTTCATAAGAAAAACGAACAAAG 643
consensus_802#1      ------------------------------------------------------------
                                                                                 

consensus_802#0      AAAATGAAGAACAACTGTAAAAAATAATTGATAAAATAATTTTGACTATATTAAATGAAA 703
consensus_802#1      ------------------------------------------------------------
                                                                                 

consensus_802#0      TTACAAAAACAAAAAATACAAA 725
consensus_802#1      ----------------------
                                           




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)