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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[GAAGGCTGATGATGGAACACCATTCGTCGAATTGCTGAAACAACGTAATATCTTGCCAGGTATCAAGGTTGACACAGGTGTAGTAACATTATTTGGTACCGAGGAAGAAACCACTACGCAGGGTCTCGACAATCTTCAAGCTCGTTGTATTCAATACAAGAAAGATGGATGTCAATTCGCCAAATGGAGATGCGTGCTGAAAATCAGAAAAGATTGTCCCAGCAAATTGGCCATTTTGGAAAATGCCAATGTTTTGGCTCGTTACGCTTCTATTTGTCAAAGTGCTAGAATTGTGCCAATCGTCGAGCCTGAGATTTTACCCGATGGTGATCATGATCTTGCCCGTTGCCAACAGGTCACGGAAGAAGTATTGGCCGCCGTGTACAAGGCACTCAGTGACCATCATGTGTATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAGTTGCCC]
[+] EMBL BI515079 [GAAGGCTGATGATGGAACACCATTCGTCGAATTGCTGAAACAACGTAATATCTTGCCAGGTATCAAGGTTGACACAGGTGTAGTAACATTATTTGGTACCGAGGAAGAAACCACTACGCAGGGTCTCGACAATCTTCAAGCTCGTTGTATTCAATACAAGAAAGATGGATGTCAATTCGCCAAATGGAGATGCGTGCTGAAAATCAGAAAAGATTGTCCCAGCAAATTGGCCATTTTGGAAAATGCCAATGTTTTGGCTCGTTACGCTTCTATTTGTCAAAGTGCTAGAATTGTGCCAATCGTCGAGCCTGAGATTTTACCCGATGGTGATCATGATCTTGCCCGTTGCCAACAGGTCACGGAAGAAGTATTGGCCGCCGTGTACAAGGCACTCAGTGACCATCATGTGTATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAGTTGCCC]
consensusID : consensus_815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 464 fasta sequence
[CATCATGTGTATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAGTTGCCCAAATAAAGCGTCACCTCAGGAAATCGCAGCAGCTACTGTGACCGCTTTATTGCGTACTGTTCCACCTGCAGTACCTGGAATTACTTTCCTCAGCGGCGGTCAATCAGAAGAGGAGGCGTCTGTGAATCTGGATGCTATTAATAAGTTCCCCGCGAACAAACCTTGGGCTTTGACCTTCAGCTATGGCCGTGCTCTTCAAGCTTCCGTGCTTCGCGCATGGGGAGGCAAGAAGGAACAGATTAGCGCTGGCCAGGAAGAGCTTATCAAGAGGGCTAAGGCTAACAGCGAATCGGCACTCGGCAAATACAGCGGTGGTGTAGTGGGAGCTGCTGGCAATGCTACGCTTTTCGTCGCGAATCACGCGTACTAAAATAATCATTAAAATATTGATAAAAAAAA]
[+] EMBL BI510892 [CATCATGTGTATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAGTTGCCCAAATAAAGCGTCACCTCAGGAAATCGCAGCAGCTACTGTGACCGCTTTATTGCGTACTGTTCCACCTGCAGTACCTGGAATTACTTTCCTCAGCGGCGGTCAATCAGAAGAGGAGGCGTCTGTGAATCTGGATGCTATTAATAAGTTCCCCGCGAACAAACCTTGGGCTTTGACCTTCAGCTATGGCCGTGCTCTTCAAGCTTCCGTGCTTCGCGCATGGGGAGGCAAGAAGGAACAGATTAGCGCTGGCCAGGAAGAGCTTATCAAGAGGGCTAAGGCTAACAGCGAATCGGCACTCGGCAAATACAGCGGTGGTGTAGTGGGAGCTGCTGGCAATGCTACGCTTTTCGTCGCGAATCACGCGTACTAAAATAATCATTAAAATATTGATAAAAAAAA]
[+] EMBL BI511924 [CATCATGTGTATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAGTTGCCCAAATAAAGCGTCACCTCAGGAAATCGCAGCAGCTACTGTGACCGCTTTATTGCGTACTGTTCCACCTGCAGTACCTGGAATTACTTTCCTCAGCGGCGGTCAATCAGAAGAGGAGGCGTCTGTGAATCTGGATGCTATTAATAAGTTCCCCGCGAACAAACCTTGGGCTTTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_815#0 GAAGGCTGATGATGGAACACCATTCGTCGAAT-TGCTGAAACAACGTAATATCTTGCCAG 59
consensus_815#1 -------CATCATGTG-TATCTTGAGGGAACTCTTTTGAAACCGAACATGGTAACACCAG 52
** *** * * * * * * * ****** * * ****
consensus_815#0 GTATCAAGGTTGACACAGGTGTAGTAACATTATTTGGTACCGAGGAAGAAACCACTACGC 119
consensus_815#1 GA--CAGAGTTG-CCCAAATAAAGCGTCACCTCAGGAAATCGCAGCAGCTACTGTGAC-C 108
* ** **** * ** * ** ** * * ** * ** ** ** *
consensus_815#0 AGGGTCTCGACAATCTTCAAGCTCGTTGTATTCAATACAAGAAAGATGGATGTCAATTCG 179
consensus_815#1 GCTTTATTGCGTACTGTTCCACCTGCAGTACCTGGAATTACTTTCCTCAGCGGCGGTCAA 168
* * * * * * * *** * * * * * *
consensus_815#0 CCAAATGGAGATGCGTGCTGAAAATCAGAA-------AAGATTGTCCCAGCAAATTGGCC 232
consensus_815#1 TCAGAAGAGGAGGCGT-CTGTGAATCTGGATGCTATTAATAAGTTCCCCGCGAACAAACC 227
** * * ** **** *** **** * * ** * **** ** ** **
consensus_815#0 AT----TTTGGAAAATGCCAATGTTTTGGCTCGTTACGCTTCTATTTGTCAAAGTGCTAG 288
consensus_815#1 TTGGGCTTTGACCTTCAGCTATGGCCGTGCTCTTCAAGCTTCCGTGCTTC---GCGCATG 284
* **** * *** **** * * ***** * ** * ** *
consensus_815#0 AATTGTGCCAATCGTCGAGCCTGAGATTTTACCCGATGGTGATCATGATCTTGCCCGTTG 348
consensus_815#1 GGGAG-GCAAGAAGGAACAGATTAGCGCTGGCCAGGAAGAGCTTATCAAGAGGGCTAAGG 343
* ** * * * ** * ** * * * * ** * * * *
consensus_815#0 CCAACAG------GTCACGGAAGAAGTATTGGCCGCCGTGTACAAGGCACT-CAGTGACC 401
consensus_815#1 CTAACAGCGAATCGGCACTCGGCAAATAC-AGCGGTGGTGTAGTGGGAGCTGCTGGCAAT 402
* ***** * *** ** ** ** * ***** ** ** * * *
consensus_815#0 ATCATGTGTATCTTGAGGGA--ACTCTTTTGAAACCGAACATGGTAACACCAGGACAGAG 459
consensus_815#1 GCTACGCTTTTCGTCGCGAATCACGCGTACTAAAATAATCATTAAAATATTGATAAAAAA 462
* * * ** * * * ** * * *** * *** ** * * * *
consensus_815#0 TTGCCC 465
consensus_815#1 AA---- 464
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |