|
These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[GTCAATGTGATCGATTAATAGTGCATTCTTGTGATATTTTGCGAACATTTACGTGAAACGGGATTCAACTCGGCGTTTTCAATTGGCTTCTATTCCTCCAAATCAGCTACGTTTACTGCGCAACAGGAAAGGGAACAAAGGGTCCGCAGTTCGTTAGGTGGACACAACTTTCTTCTAATTATCAAAGAGCGGCCGAGAAGAAACATGGAGGTGGGCGGGGTCGGTATCGCGACAGATGCAATTACAGTTAGTTACGGGAACTAATCCACTGCGACTGCTTGTACTTCATCATCGGGGCTTTGCAATGTAATTTAAGTTTGATTGTCAAACCTGGCCGTTCATCTCTTTCTCTGGGGGAGGGGGAGGGAGAGAAAAAAAAAAAACGTGGTGGCGGATTTGATTGTGGAAAATTGGTGCGAAATACGATTTTACTGCTACTATGGAAATAATTACACGGCCATTTCGTCGAATTATTTTTTTTTCCCCCTCTCTTTGATTGAGAAATTTGACATTCGATAAATATATATACATATTACTTAAAATAACAATTAAAACGATCATAATCTAAAATATTTAACGAGACAAGCGAATTATG]
[+] EMBL BI509106 [GTCAATGTGATCGATTAATAGTGCATTCTTGTGATATTTTGCGAACATTTACGTGAAACGGGATTCAACTCGGCGTTTTCAATTGGCTTCTATTCCTCCAAATCAGCTACGTTTACTGCGCAACAGGAAAGGGAACAAAGGGTCCGCAGTTCGTTAGGTGGACACAACTTTCTTCTAATTATCAAAGAGCGGCCGAGAAGAAACATGGAGGTGGGCGGGGTCGGTATCGCGACAGATGCAATTACAGTTAGTTACGGGAACTAATCCACTGCGACTGCTTGTACTTCATCATCGGGGCTTTGCAATGTAATTTAAGTTTGATTGTCAAACCTGGCCGTTCATCTCTTTCTCTGGGGGAGGGGGAGGGAGAGAAAAAAAAAAAACGTGGTGGCGGATTTGATTGTGGAAAATTGGTGCGAAATACGATTTTACTGCTACTATGGAAATAATTACACGGCCATTTCGTCGAATTATTTTTTTTTCCCCCTCTCTTTGATTGAGAAATTTGACATTCGATAAATATATATACATATTACTTAAAATAACAATTAAAACGATCATAATCTAAAATATTTAACGAGACAAGCGAATTATG]
[+] EMBL BI503776 [GTCAATGTGATCGATTAATAGTGCATTCTTGTGATATTTTGCGAACATTTACGTGAAACGGGATTCAACTCGGCGTTTTCAATTGGCTTCTATTCCTCCAAATCAGCTACGTTTACTGCGCAACAGGAAAGGGAACAAAGGGTCCGCAGTTCGTTAGGTGGACACAACTTTCTTCTAATTATCAAAGAGCGGCCGAGAAGAAACATGGAGGTGGGCGGGGTCGGTATCGCGACAGATGCAATTACAGTTAGTTACGGGAACTAATCCACTGCGACTGCTTGTACTTCATCATCGGGGCTTTGCAATGTAATTTAAGTTTGATTGTCAAACCTGGCCGTT ]
consensusID : consensus_817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence
[CATCTTTCGTGTTTATTTCGTTTTAAAATGTATCCTGATGTTCATTTTCGTCAATGTGATCGATTAATAGTGCATTCTTGTGATATTTTGCGAACATTTACGTGAAACGGGATTCAACTCGGCGTTTTCAATTGGCTTCTATTCCTCCAAATCAGCTACGTTTACTGCGCAACAGGAAAGGGAACAAAGGGTCCGCAGTTCGTTAGGTGGACACAACTTTCTTCTAATTATCAAAGAGCGGCCGAGAAGAAACATGGAGGTGGGCGGGGTCGGTATCGCGACAGATGCAATTACAGTTAGTTACGGGAACTAATCCACTGCGACTGCTTGTACTTCATCATCGGGGCTTTGCAATTATGCAGTACACGTAGTATACACGAGTGTGCACGATGGAGGACAAAAGTGTCATAAAATGTAACGAGGAATATTGAAAAAAAATACGTAATTTAGAAGAATACATTGGAAGGCGTAATGAGAATTATATTTATAAAAGGTTATTTATTAT]
[+] EMBL BI507349 [CATCTTTCGTGTTTATTTCGTTTTAAAATGTATCCTGATGTTCATTTTCGTCAATGTGATCGATTAATAGTGCATTCTTGTGATATTTTGCGAACATTTACGTGAAACGGGATTCAACTCGGCGTTTTCAATTGGCTTCTATTCCTCCAAATCAGCTACGTTTACTGCGCAACAGGAAAGGGAACAAAGGGTCCGCAGTTCGTTAGGTGGACACAACTTTCTTCTAATTATCAAAGAGCGGCCGAGAAGAAACATGGAGGTGGGCGGGGTCGGTATCGCGACAGATGCAATTACAGTTAGTTACGGGAACTAATCCACTGCGACTGCTTGTACTTCATCATCGGGGCTTTGCAATTATGCAGTACACGTAGTATACACGAGTGTGCACGATGGAGGACAAAAGTGTCATAAAATGTAACGAGGAATATTGAAAAAAAATACGTAATTTAGAAGAATACATTGGAAGGCGTAATGAGAATTATATTTATAAAAGGTTATTTATTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_817#0 -------------------------------------------------GTCAATGTGAT 11
consensus_817#1 CATCTTTCGTGTTTATTTCGTTTTAAAATGTATCCTGATGTTCATTTTCGTCAATGTGAT 60
***********
consensus_817#0 CGATTAATAGTGCATTCTTGTGATATTTTGCGAACATTTACGTGAAACGGGATTCAACTC 71
consensus_817#1 CGATTAATAGTGCATTCTTGTGATATTTTGCGAACATTTACGTGAAACGGGATTCAACTC 120
************************************************************
consensus_817#0 GGCGTTTTCAATTGGCTTCTATTCCTCCAAATCAGCTACGTTTACTGCGCAACAGGAAAG 131
consensus_817#1 GGCGTTTTCAATTGGCTTCTATTCCTCCAAATCAGCTACGTTTACTGCGCAACAGGAAAG 180
************************************************************
consensus_817#0 GGAACAAAGGGTCCGCAGTTCGTTAGGTGGACACAACTTTCTTCTAATTATCAAAGAGCG 191
consensus_817#1 GGAACAAAGGGTCCGCAGTTCGTTAGGTGGACACAACTTTCTTCTAATTATCAAAGAGCG 240
************************************************************
consensus_817#0 GCCGAGAAGAAACATGGAGGTGGGCGGGGTCGGTATCGCGACAGATGCAATTACAGTTAG 251
consensus_817#1 GCCGAGAAGAAACATGGAGGTGGGCGGGGTCGGTATCGCGACAGATGCAATTACAGTTAG 300
************************************************************
consensus_817#0 TTACGGGAACTAATCCACTGCGACTGCTTGTACTTCATCATCGGGGCTTTGCAATGTAAT 311
consensus_817#1 TTACGGGAACTAATCCACTGCGACTGCTTGTACTTCATCATCGGGGCTTTGCAAT-TA-- 357
******************************************************* **
consensus_817#0 TTAAGTTTGATTGTCAAACCTGGCCGTTCATCTCTTTCTCTGGGGGAGGGGGAGGGAGAG 371
consensus_817#1 TGCAGTACACGTAGTATACACGAGTGTGCAC----------------GATGGAGGACAAA 401
* *** * * ** * ** ** * ***** *
consensus_817#0 AAAAAAAAAAAACGTGGTGGCGGATTTGATTGTGGAAAATTGGTGCGAAATACGATTTTA 431
consensus_817#1 AGTGTCATAAAATGTAACGAGGAATAT--TGAAAAAAAATACGTAATTTAGAAGAATACA 459
* * **** ** * * ** * * ***** ** * * ** * *
consensus_817#0 CTGCTAC-TATGGAAATAATTACACGGCCATTTCGTCGAATTATTTTTTTTTCCCCCTCT 490
consensus_817#1 TTGGAAGGCGTAATGAGAATTATAT-----TTATAAAAGGTTATTTATTAT--------- 505
** * * * ***** * ** ****** ** *
consensus_817#0 CTTTGATTGAGAAATTTGACATTCGATAAATATATATACATATTACTTAAAATAACAATT 550
consensus_817#1 ------------------------------------------------------------
consensus_817#0 AAAACGATCATAATCTAAAATATTTAACGAGACAAGCGAATTATG 595
consensus_817#1 ---------------------------------------------
|
|||||||
| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |