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Apis mellifera
cluster # 853 cluster # 853       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_853#0 length = 644 sequences # 2  
 consensus_853#1 length = 307 sequences # 1  
consensusID : consensus_853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 644
fasta sequence 
                              [TCATTTACAATAAAAGAACACAAAATCAAAAAAGATGATGACTTTACAATAAATTCTTCATATAACGCGCGCAATAATATGAAAATATGGCGGCTATCGAAATATCTTCAAAATATCGATTCTCGACCTAACCTCACTTCAGTCTCCGCTAGGTGCGCACAGAGTTAGTGTCGCTTTGTAGTGGAAAAGGAAACGAAGTAACTGTAAATAGAACGATACCATAAGAGTTGACTGTTTAATCGACAAGCGCGCACGCGCCGCTTTCCCCTCGCTCTCACAATATACTCCGCGCGTAACCGCCGCCATAGTTGATATTTCTCCGATAGAATATTAATAGCAGCGTAAGTTTTCGCGNGTAAACATATTTTTATTTACTAACTGGAAAACAAGAAAGCGTTCGACGAGGGCGGTGAGACGAGGTCATTCAAGATAAAGCTGGGATCCGTAAGAAGAAGGAGGGTGTCTACTTTCACAGCTCGTGGTTTTCAGGAGAGTGGCCTGGCATCGCGGCGCTTCGAGTTAACGTGTGGCCGTCGGGTGGCTATGTACCGTTAGCTCGAATTCATTCCCCGTTGGCCGGCCCAAGACCCACGCTTACCTACCGACTGGGGCCATACTCGATCGAACTCGACTGTTGTAAACCC]

[-] EMBL BI506225             [TCATTTACAATAAAAGAACACAAAATCAAAAAAGATGATGACTTTACAATAAATTCTTCATATAACGCGCGCAATAATATGAAAATATGGCGGCTATCGAAATATCTTCAAAATATCGATTCTCGACCTAACCTCACTTCAGTCTCCGCTAGGTGCGCACAGAGTTAGTGTCGCTTTGTAGTGGTAAAGGAAACGAAGTAACTGTAAATAGAACGATACCATAAGAGTTGACTGTTTAATCGACAAGCGCGCACGCGCCGCTTTCCCCTCGCTCTCACAATATACTCCGCGCGTAACCGCCGCCATAGTTGATATTTCTCCGATAGAATATTAATAGCAGCGTAAGTTTTCGCGGTTAAACATATTTTTATTTACTAACTGGAAAACAAGAATGCGTTCGACGAGGGCGGTGAGACGAGGTCATTCAAGATAAAGCTGGGATCCGTAAGAAGAAGGAGGGTGTCTACTTTCACAGCTCGTGGTTTTCAGGAGAGTGGCCTGGCATCGCGGCGCTTCGAGTTAACGTGTGGCCGTCGGGTGGCTATGTACCGTTAGCTCGAATTCATTCCCCGTTGGCCGGCCCAAGACCCACGCTTACCTACCGACTGGGGCCATACTCGATCGAACTCGACTGTTGTAAACCC]
[+] EMBL BI503607             [                                                                                                                                                                                       tAAAAATAATTATAATACCTGTAAATAGAACGATACCATAAGAGTTGACTGTTTAATCGACAAGCGCGCACGCGCCGCTTTCCCCTCGCTCTCACAATATACTCCGCGCGTAACCGCCGCCATAGTTGATATTTCTCCGATAGAATATTAATAGCAGCGTAAGTTTTCGCGNGTAAACATATTTTTATTTACTAACTGGAAAACAAAAAAa                                                                                                                                                                                                                                                          ]




>consensus_853#0
TCATTTACAATAAAAGAACACAAAATCAAAAAAGATGATGACTTTACAATAAATTCTTCA
TATAACGCGCGCAATAATATGAAAATATGGCGGCTATCGAAATATCTTCAAAATATCGAT
TCTCGACCTAACCTCACTTCAGTCTCCGCTAGGTGCGCACAGAGTTAGTGTCGCTTTGTA
GTGGAAAAGGAAACGAAGTAACTGTAAATAGAACGATACCATAAGAGTTGACTGTTTAAT
CGACAAGCGCGCACGCGCCGCTTTCCCCTCGCTCTCACAATATACTCCGCGCGTAACCGC
CGCCATAGTTGATATTTCTCCGATAGAATATTAATAGCAGCGTAAGTTTTCGCGNGTAAA
CATATTTTTATTTACTAACTGGAAAACAAGAAAGCGTTCGACGAGGGCGGTGAGACGAGG
TCATTCAAGATAAAGCTGGGATCCGTAAGAAGAAGGAGGGTGTCTACTTTCACAGCTCGT
GGTTTTCAGGAGAGTGGCCTGGCATCGCGGCGCTTCGAGTTAACGTGTGGCCGTCGGGTG
GCTATGTACCGTTAGCTCGAATTCATTCCCCGTTGGCCGGCCCAAGACCCACGCTTACCT
ACCGACTGGGGCCATACTCGATCGAACTCGACTGTTGTAAACCC

consensusID : consensus_853#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence 
                              [ATTATACAACATTATAAATATATATATTCATTTACAATAAAAGAACACAAAATCAAAAAAGATGATGACTTTACAATAAATTCTTCATATAACGCGCGCAATAATATGAAAATATGGCGGCTATCGAAATATCTTCAAAATATCGATTCTCGACCTAACCTCACTTCAGTCTCCGCTAGGTGCGCACAGAGTTAGTGTCGCTTTGTAGTGGTAAAGGAAACGAAGTAACTGAGAGTAAAACAGAACAACGGACAGGTGTTTTTTTGCACTGTAGTAAATTTTTTTCGAAAATTCGCGATTCTTATAA]

[-] EMBL BI511992             [ATTATACAACATTATAAATATATATATTCATTTACAATAAAAGAACACAAAATCAAAAAAGATGATGACTTTACAATAAATTCTTCATATAACGCGCGCAATAATATGAAAATATGGCGGCTATCGAAATATCTTCAAAATATCGATTCTCGACCTAACCTCACTTCAGTCTCCGCTAGGTGCGCACAGAGTTAGTGTCGCTTTGTAGTGGTAAAGGAAACGAAGTAACTGAGAGTAAAACAGAACAACGGACAGGTGTTTTTTTGCACTGTAGTAAATTTTTTTCGAAAATTCGCGATTCTTATAA]




>consensus_853#1
ATTATACAACATTATAAATATATATATTCATTTACAATAAAAGAACACAAAATCAAAAAA
GATGATGACTTTACAATAAATTCTTCATATAACGCGCGCAATAATATGAAAATATGGCGG
CTATCGAAATATCTTCAAAATATCGATTCTCGACCTAACCTCACTTCAGTCTCCGCTAGG
TGCGCACAGAGTTAGTGTCGCTTTGTAGTGGTAAAGGAAACGAAGTAACTGAGAGTAAAA
CAGAACAACGGACAGGTGTTTTTTTGCACTGTAGTAAATTTTTTTCGAAAATTCGCGATT
CTTATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_853#0      ---------------------------TCATTTACAATAAAAGAACACAAAATCAAAAAA 33
consensus_853#1      ATTATACAACATTATAAATATATATATTCATTTACAATAAAAGAACACAAAATCAAAAAA 60
                                                *********************************

consensus_853#0      GATGATGACTTTACAATAAATTCTTCATATAACGCGCGCAATAATATGAAAATATGGCGG 93
consensus_853#1      GATGATGACTTTACAATAAATTCTTCATATAACGCGCGCAATAATATGAAAATATGGCGG 120
                     ************************************************************

consensus_853#0      CTATCGAAATATCTTCAAAATATCGATTCTCGACCTAACCTCACTTCAGTCTCCGCTAGG 153
consensus_853#1      CTATCGAAATATCTTCAAAATATCGATTCTCGACCTAACCTCACTTCAGTCTCCGCTAGG 180
                     ************************************************************

consensus_853#0      TGCGCACAGAGTTAGTGTCGCTTTGTAGTGGAAAAGGAAACGAAGTAACTGTAAATAGAA 213
consensus_853#1      TGCGCACAGAGTTAGTGTCGCTTTGTAGTGGTAAAGGAAACGAAGTAACTGAGAGTAAAA 240
                     ******************************* *******************  * ** **

consensus_853#0      CGATACCATAAG-AGTTGACTGTTTAATCGACAAGCGCGCACGCGCCGCTTTCCCCTCGC 272
consensus_853#1      CAGAACAACGGACAGGTGTTTTTTTGCACTGTA-GTAAATTTTTTTCGAAAATTCGCGAT 299
                     *   ** *     ** **  * ***   *   * *           **      *     

consensus_853#0      TCTCACAATATACTCCGCGCGTAACCGCCGCCATAGTTGATATTTCTCCGATAGAATATT 332
consensus_853#1      TCTTATAA---------------------------------------------------- 307
                     *** * **                                                    

consensus_853#0      AATAGCAGCGTAAGTTTTCGCGNGTAAACATATTTTTATTTACTAACTGGAAAACAAGAA 392
consensus_853#1      ------------------------------------------------------------
                                                                                 

consensus_853#0      AGCGTTCGACGAGGGCGGTGAGACGAGGTCATTCAAGATAAAGCTGGGATCCGTAAGAAG 452
consensus_853#1      ------------------------------------------------------------
                                                                                 

consensus_853#0      AAGGAGGGTGTCTACTTTCACAGCTCGTGGTTTTCAGGAGAGTGGCCTGGCATCGCGGCG 512
consensus_853#1      ------------------------------------------------------------
                                                                                 

consensus_853#0      CTTCGAGTTAACGTGTGGCCGTCGGGTGGCTATGTACCGTTAGCTCGAATTCATTCCCCG 572
consensus_853#1      ------------------------------------------------------------
                                                                                 

consensus_853#0      TTGGCCGGCCCAAGACCCACGCTTACCTACCGACTGGGGCCATACTCGATCGAACTCGAC 632
consensus_853#1      ------------------------------------------------------------
                                                                                 

consensus_853#0      TGTTGTAAACCC 644
consensus_853#1      ------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)