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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_88#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1186 fasta sequence
[GCAACGAGAGTAACGGTAGCAGCACCGCGCTGTTATAGGGCTGGAGGTGGAGGAGGTAGTGACGGTGGAGGTGGAGGTGCAAGCGACGAAGAAGAAACATAATAGGAAGCGGAAGAAGCGAAACGACGAAAAAGAAGAGAGAGAGAGAGGGTAGAACGGAAGAAAGTAGAACCGACACACATACATACGTGCGCGCGCGCGTTTAGATACGGAAAGGAAAGGAGTAAAGGTGGAGAAGGAGGAAGGAGGCGAAACGCCTGGGTTTCTCGCGAGAAAAGGGTTATTTCCAGTGATACGTCCTGGAGGCGCCTGTCGTCTTCGCCGGTACAACCATAACGCCGCCCGCTTTAAAACGCCCGAGACGGGATACGGTGGACTCATCGCCGCCACCCGCTCGAACCGCAGCCCCCGGAAACCCCGGACCATCCAGCAAACTCGCTTGCATCATGGACGCACCGCTCTCGCAGAGTATGGACTCCGTCAACACGGTGGCCACCGGTGAAGACGAGGTGCGCACCTTGTTCGTGAGCGGCTTGCCGATGGACGCCAAGCCGAGGGAGCTCTATCTGCTCTTCAGAGCATACGAGGGGTACGAGGGATCCCTGTTGAAAGTCACAAGCAAAAATGGGAAAACAGCGTCGCCGGTGGGTTTCGTGACTTTTCACACGAGGGCCGGTGCAGAGGCGGCGAAACAGGACCTTCAGCAGGGGGTTAGATTCGATCCTGATATGCCACAAACCATACGTTTGGAATTTGCAAAAAGTAACACAAAGGTTAGCAAACCCAAGCAACCAGCCGCTGCAGCAGCCACCTCGCACCCTGCTCTGATGCACCCTCTAACTGGACACCTAGGGAGCCCATTCTTCCCTGNTGGTCCTGAATTGTGGCACCATCCATTGGCGTACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCATCCGGCGTTACATCCTCAGGTCCCCGTACGTTCCTATCTTTGACTATCTGCAGACAAAGCTCTGGAGCCGCCGACGAGCGCCCCGATGCACGCGCCCATGTCTCTGCCGCATCCGACGACGCTGACGTCGATACACGCGTCGCTACCCCATTTCCTACCCTCGCCGGCACTGGCATCGCCGGTTGGTTCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTG]
[+] EMBL BI512872 [GCAACGAGAGTAACGGTAGCAGCACCGCGCTGTTATAGGGCTGGAGGTGGAGGAGGTAGTGACGGTGGAGGTGGAGGTGCAAGCGACGAAGAAGAAACATAATAGGAAGCGGAAGAAGCGAAACGACGAAAAAGAAGAGAGAGAGAGAGGGTAGAACGGAAGAAAGTAGAACCGACACACATACATACGTGCGCGCGCGCGTTTAGATACGGAAAGGAAAGGAGTAAAGGTGGAGAAGGAGGAAGGAGGCGAAACGCCTGGGTTTCTCGCGAGAAAAGGGTTATTTCCAGTGATACGTCCTGGAGGCGCCTGTCGTCTTCGCCGGTACAACCATAACGCCGCCCGCTTTAAAACGCCCGAGACGGGATACGGTGGACTCATCGCCGCCACCCGCTCGAACCGCAGCCCCCGGAAACCCCGGACCATCCAGCAAACTCGCTTGCATCATGGAC ]
[+] EMBL BI509454 [ GCCGCCCGCTTTAAAACGCCCGAGACGGGATACGGTGGACTCATCGCCGCCACCCGCTCGAACCGCAGCCCCCGGAAACCCCGGACCATCCAGCAAACTCGCTTGCATCATGGACGCACCGCTCTCGCAGAGTATGGACTCCGTCAACACGGTGGCCACCGGTGAAGACGAGGTGCGCACCTTGTTCGTGAGCGGCTTGCCGATGGACGCCAAGCCGAGGGAGCTCTATCTGCTCTTCAGAGCATACGAGGGGTACGAGGGATCCCTGTTGAAAGTCACAAGCAAAAATGGGAAAACAGCGTCGCCGGTGGGTTTCGTGACTTTTCACACGAGGGCCGGTGCAGAGGCGGCGAAACAGGACCTTCAGCAGGGGGTTAGATTCGATCCTGATATGCCACAAACCATACGTTTGGAATTTGCAAAAAAAAA ]
[+] EMBL BI511947 [ ACGAGGTGCGCACCTTGTTCGTGAGCGGCTTGCCGATGGACGCCAAGCCGAGGGAGCTCTATCTGCTCTTCAGAGCATACGAGGGGTACGAGGGATCCCTGTTGAAAGTCACAAGCAAAAATGGGAAAACAGCGTCGCCGGTGGGTTTCGTGACTTTTCACACGAGGGCCGGTGCAGAGGCGGCGAAACAGGACCTTCAGCAGGGGGTTAGATTCGATCCTGATATGCCACAAACCATACGTTTGGAATTTGCAAAAAGTAACACAAAGGTTAGCAAACCCAAGCAACCAGCCGCTGCAGCAGCCACCTCGCACCCTGCTCTGATGCACCCTCTAACTGGACACCTAGGGAGCCCATTCTTCCCTGNTGGTCCTGAATTGTGGCACCATCCATTGGCGTACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCA ]
[+] EMBL BI509884 [ ATCCCTGTTGAAAGTCACAAGCAAAAATGGGAAAACAGCGTCGCCGGTGGGTTTCGTGACTTTTCACACGAGGGCCGGTGCAGAGGCGGCGAAACAGGACCTTCAGCAGGGGGTTAGATTCGATCCTGATATGCCACAAACCATACGTTTGGAATTTGCAAAAAGTAACACAAAGGTTAGCAAACCCAAGCAACCAGCCGCTGCAGCAGCCACCTCGCACCCTGCTCTGATGCACCCTCTAACTGGACACCTAGGGAGCCCATTCTTCCCTGGTGGTCCTGAATTGTGGCACCATCCATTGGCGTACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCATCCGGCGTTACATCCTCAGGTCCCCGTACGTTCCTATCTTTGACTATCTGCAGACAAAGCTCTGGAGCCGCCGACGAGCGCCCCGATGCACGCGCCCATGTCTCTGCCGCATCCGACGACGCTGACGTCGATACACGCGTCGCTACCCCATTTCCTACCCTCGCCGGCACTGGCATCGCCGGTTGGTTCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTG]
consensusID : consensus_88#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence
[TACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCATCCGGCGTTACATCCTCAGGTCCCCGCGCCCATGTCTCTGCCGCATCCGACGACGCTGACGTCGATACACGCGTCGCTACCCCATTTCCTACCCTCGCCGGCACTGGCATCGCCGGTTGGTTCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTGTTCCACCCTCTTCGTGGCCAACCTCGGCCAATTCGTGTCCGAGCACGAGCTCAAGGATATCTTCAGCAGGGATCAAAGAGAGAAGAAAACGGGCAACCTTAAGATCGACATCAACGGCATGTAAGAAAGGCAAGGGAACGAGGGAACGACCGTGCGTGCTCACACCCCGGAAATATACGATAAAAACGAGGACCGATGTTGGAACCCGATTGTTTTCGTTTCGATCTGTAAAAGAAGGAAGGAAGGAAGGAAGGAAAATATAAATTGAAGGTGGAGAACACATCCGTGCTCCTCCAAGAACGAGGTATCGAGTATATCGAATCGCTCGAGAAATCCACGCTTCAGCGAAGGAATCGAGGATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGGGGTGGGATCACGAAGAAAAGGAAGGAAAGCGCGTGATGAAGGAGATGAAAGAGAAACGGAGATGAGGAAAGGCATAGAGAGAGAGAAAAAAAAAAAGATGCGAAGAAGNNGGGGAAAGATACCTCCAAAAGACAATTTTACACAGGATGT]
[+] EMBL BI513081 [TACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCATCCGGCGTTACATCCTCAGGTCCCCGCGCCCATGTCTCTGCCGCATCCGACGACGCTGACGTCGATACACGCGTCGCTACCCCATTTCCTACCCTCGCCGGCACTGGCATCGCCGGTTGGTTCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTGTTCCACCCTCTTCGTGGCCAACCTCGGCCAATTCGTGTCCGAGCACGAGCTCAAGGATATCTTCAGCAGGGATCAAAGAGAGAAGAAAACGGGCAACCTTAAGATCGACATCAACGGCATGTAAGAAAGGCAAGGGAACGAGGGAACGACCGTGCGTGCTCACACCCCGGAAATATACGATAAAAACGAGGACCGA ]
[+] EMBL BI513154 [ GGCATGTAAGAACGGCAAGGGAACGAGGGAACGACCGTGCGTGCTCACACCCCGGAAATATACGATAAAAACGAGGACCGATGTTGGAACCCGATTGTTTTCGTTTCGATCTGTAAAAGAAGGAAGGAAGGAAGGAAGGAAAATATAAATTGAAGGTGGAGAACACATCCGTGCTCCTCCAAGAACGAGGTATCGAGTATATCGAATCGCTCGAGAAATCCACGCTTCAGCGAAGGAATCGAGGATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGGGGTGGGATCACGAAGAAAAGGAAGGAAAGCGCGTGATGAAGGAGATGAAAGAGAAACGGAGATGAGGAAAGGCATAGAGAGAGAGAAAAAAAAAAAGATGCGAAGAAGNNGGGGAAAGATACCTCCAAAAGACAATTTTACACAGGATGT]
consensusID : consensus_88#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 412 fasta sequence
[AAAGAAGGAAAGCTAAATATAAATTGAAGGTGGAGAACACATCCGTGTTCCTCCAAGAGCGAGGTATCGAGTATATCGAATCGCTCGAGAAATCCACGCTTCAGCGAAGGAATCGAGGATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGGGGTGGGATCACGAAGAAAAGGAAGGAAATCGCGTGATGAAGGAGATGAAAGAGAAACGGAAGGAGATGAGAAAAGGCATTTCACGTGAGAGAGAGAGAGAGATACACGAGGGAAGAGGGAAATAAAGGAAGGGGAAATGCGAATAGATCAGGAAAATTTTCGAGTACACGGGACAAGTGTGTATGGTTGTTCAGCCTTGTCTCTGCGAAAGCAGCACCACAATTATAGGGGAGG]
[+] EMBL BI515735 [AAAGAAGGAAAGCTAAATATAAATTGAAGGTGGAGAACACATCCGTGTTCCTCCAAGAGCGAGGTATCGAGTATATCGAATCGCTCGAGAAATCCACGCTTCAGCGAAGGAATCGAGGATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGGGGTGGGATCACGAAGAAAAGGAAGGAAATCGCGTGATGAAGGAGATGAAAGAGAAACGGAAGGAGATGAGAAAAGGCATTTCACGTGAGAGAGAGAGAGAGATACACGAGGGAAGAGGGAAATAAAGGAAGGGGAAATGCGAATAGATCAGGAAAATTTTCGAGTACACGGGACAAGTGTGTATGGTTGTTCAGCCTTGTCTCTGCGAAAGCAGCACCACAATTATAGGGGAGG]
[+] EMBL BI511368 [ AAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGGGGTGGGATCACGAAGAAAAGGAAGGAAATCGCGTGATGAAGGAGATGAAAGAGAAACGGAAGGAGATGAGAAAAGGCATTTCACGTGAGAGAGAGAGAGAGATACACGAGGGAAGAGGGAAATAAAGGAAGGGGAAATGCGAATAGATCAGGAAAATTTTCGAGTACACGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_88#1 --TACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCATC--C 56
consensus_88#2 ------------------------------------------------------------
consensus_88#0 GCAACGAGAGTAACGGTAGCAGCACCGCGCTGTTATAGGGCTGGAGGTGGAGGAGGTAGT 60
consensus_88#1 GGCGTTACATCCTCAGGTCCCCGCGCCCATGTCTCTGCCGCATCCGACGACGCTGACGTC 116
consensus_88#2 ------------------------------------------------------------
consensus_88#0 GACGGTGGAGGTGGAGGTGCAAGCGACGAAGAAGAAACATAATAGGAAGCGGAAGAAGCG 120
consensus_88#1 GATACACGCGTCGCTACCCCATTTCCTACCCTCG--CCGGCACTGGCATCGCCGGTTGGT 174
consensus_88#2 ------------------------------------------------------------
consensus_88#0 AAACGACGAAAAAGAAGAGAGAGAGAGAGGGTAGAACGGAAGAAAGTAGAACCGACACAC 180
consensus_88#1 TCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTGTTCCACCCTCTTCGTG 234
consensus_88#2 ------------------------------------------------------------
consensus_88#0 ATACATACGTGCGCGCGCGCGTTTAGATACGGAAAGGAAAGGAGTAAAGGTGGAGAAGGA 240
consensus_88#1 GCCAACCTCGGCCAATTCGTGTCCGAGCACGAGCTCAAGGATATCTTCAGCAGGG-ATCA 293
consensus_88#2 ------------------------------------------------------------
consensus_88#0 GGAAGGAGGCGAAACGCCTGGGTTTCTCGCGAGAAAAGGGTTATTTCCAGTGATACGTCC 300
consensus_88#1 AAGAGAGAAGAAAACGGGCAACCTTAAGATCGACATCAACGGCATGTAAGAAAGGCAAGG 353
consensus_88#2 ------------------------------------------------------------
consensus_88#0 TGGAGGCGCCTGTCGTCTTCGCCGGTACAACCATAACGCCGCCCGCTTTAAAACGCCCGA 360
consensus_88#1 GAACGAGG--GAACGACCGTGCGTGCTCACACCCCGGAAATATA---CGATAAAAACGAG 408
consensus_88#2 ------------------------------------------------------------
consensus_88#0 GACGGGATACGGTGGACTCATCGCCGCCACCCGCTCGAACCGCAGCCCCCGGAAACCCCG 420
consensus_88#1 GACCGATGTTGGAACCCGATTGTTTTCGTTTCGATCTGTAAAAGAAGGAAGGAAGGAAGG 468
consensus_88#2 ---------------------------------------------------AAAGAAGGA 9
consensus_88#0 GACCATCCAGCAAACTCGCTTGCATCATGGACGCACCGCTCTCGCAG--AGTATGGACTC 478
* * *
consensus_88#1 AAGGAAAATATAAATTGAAGGTGGAGAACACATCCGTGCTCC-TCCAAGAACGAGGTATC 527
consensus_88#2 AAGCTAAATATAAATTGAAGGTGGAGAACACATCCGTGTTCC-TCCAAGAGCGAGGTATC 68
consensus_88#0 CGTCAACACGGTGGCCACCGGTGAAGACGAGGTGCGCACCTTGTTCGTGAGCGGCTTGCC 538
* * **** *** * * ** * * ** ** * *
consensus_88#1 GA-GTATATCGAATCGCTCGAGAA--ATCCACGCTTCAG------CGAAGGAATCGAGG- 577
consensus_88#2 GA-GTATATCGAATCGCTCGAGAA--ATCCACGCTTCAG------CGAAGGAATCGAGG- 118
consensus_88#0 GATGGACGCCAAGCCGAGGGAGCTCTATCTGCTCTTCAGAGCATACGAGGGGTACGAGGG 598
** * * * * ** *** *** * ****** *** ** *****
consensus_88#1 ATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGG 637
consensus_88#2 ATCCAAGATGGCGGCGCGGCAAGTAACCGCGGGAAATTTGAAACGATTCGAGCGATCGGG 178
consensus_88#0 ATCCCTGTTGAAAGT--CACAAGCAAAAATGGGAAAACAGCGTCGCCGGTGGGTTTCGTG 656
**** * ** * **** ** ****** * ** * *** *
consensus_88#1 GGTGGGATCACGAAGAAAAGGAAGGAAAGCGCGTGATGAAGGAGATGAAAGAGAAACGGA 697
consensus_88#2 GGTGGGATCACGAAGAAAAGGAAGGAAATCGCGTGATGAAGGAGATGAAAGAGAAACGGA 238
consensus_88#0 ACTTTTCACACGAGGGCCGGTGCAGAGGCGGCGAAACAGGACCTTCAGCAGGGGGTTAGA 716
* ***** * * ** *** * ** * **
consensus_88#1 ----GATGAGGAAAGGCAT--------AGAGAGAGAGAAAAA------AAAAAAGATGCG 739
consensus_88#2 AGGAGATGAGAAAAGGCATTTCACGTGAGAGAGAGAGAGAGATACACGAGGGAAGAGGGA 298
consensus_88#0 TTCGATCCTGATATGCCACAAACCATACGTTTGGAATTTGCAAAAAGTAACACAAAGGTT 776
* * * ** * * * * * * * *
consensus_88#1 AAGAAGNNGGGGAAAGATACCTCCAA---AAG------ACAATTTT-----ACACAGGAT 785
consensus_88#2 AATAAAGGAAGGGGAAATGCGAATAGATCAGG------AAAATTTTCGAGTACACGGGAC 352
consensus_88#0 AGCAAACCCAAGCAACCAGCCGCTGCAGCAGCCACCTCGCACCCTGCTCTGATGCACCCT 836
* ** * * * * * * * *
consensus_88#1 GT---------------------------------------------------------- 787
consensus_88#2 AAGTGTGTATGGTTGTTCAGCCTTGTCTCTGCGAAAGCAGCACCACAATTATAGGGGAGG 412
consensus_88#0 CTAACTGGACACCTAGGGAGCCCATTCTTCCCTGNTGGTCCTGAATTGTGGCACCATCCA 896
consensus_88#1 ------------------------------------------------------------
consensus_88#2 ------------------------------------------------------------
consensus_88#0 TTGGCGTACTCGACCGCTGGCGAATTACCAGGAACGCTGCAACACGCGACGCTGGTGCAT 956
consensus_88#1 ------------------------------------------------------------
consensus_88#2 ------------------------------------------------------------
consensus_88#0 CCGGCGTTACATCCTCAGGTCCCCGTACGTTCCTATCTTTGACTATCTGCAGACAAAGCT 1016
consensus_88#1 ------------------------------------------------------------
consensus_88#2 ------------------------------------------------------------
consensus_88#0 CTGGAGCCGCCGACGAGCGCCCCGATGCACGCGCCCATGTCTCTGCCGCATCCGACGACG 1076
consensus_88#1 ------------------------------------------------------------
consensus_88#2 ------------------------------------------------------------
consensus_88#0 CTGACGTCGATACACGCGTCGCTACCCCATTTCCTACCCTCGCCGGCACTGGCATCGCCG 1136
consensus_88#1 --------------------------------------------------
consensus_88#2 --------------------------------------------------
consensus_88#0 GTTGGTTCGCCCTCGTCCCAACCGAACATAGCAGTGAGCAACGCGCCCTG 1186
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |