These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 568 fasta sequence [CGTGCCAATGATGAGCGACCGGGTCGATCGTTGTGCAGGGATGTGGGTCAGGCATACGCCCGAACCCCCTGGATTTTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAATCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTATGTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCAACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGATAATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTAAGCCTTAAAGTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACCCAAAATCTTCACGTTCGTTGGGGCTGGTTTACCATCGCAAGGCACATAAGCTTGCATCGAGTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTGAGGATTGCCATTTTGGATTGCTACTTCTTTCGTGTACAA] [+] EMBL BI505487 [CGTGCCAATGATGAGCGACCGGGTCGATCGTTGTGCAGGGATGTGGGTCAGGCATACGCCCGAACCCCCTGGATTTTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAATCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTATGTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCAACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGATAATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTAAGCCTTAAAGTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACCCAAAATCTTCACGTTCGTTGGGGCTGGTTTACCATCGCAAGGCACATAAGCTTGCATCGAGTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTGAGGATTGCCATTTTGGATTGCTACTTCTTTCGTGTACAA] [+] EMBL BI508602 [CGTGCCAATGATGAGCGACCGGGTCGATCGTTGTGCAGGGATGTGGGTCAGGCATACGCCCGAACCCCCTGGATTTTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAATCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTATGTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCAACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGATAATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTAAGCCTTAAAGTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACCCAAAATCTTCACGTTCGTTGGGGCTGGTTTACCATCGCAAGGCACATAAGCTTGCATCGAGTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAA ] consensusID : consensus_886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [TTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAATCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTATGTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCGACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGATAATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTATGCCTTAAAGTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACCCAAAATCTTCACGTTCGTTGGGGCTGGTTTACCGTCGCAGGGTACATAAGCTTGCATCGAGTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTATATACTTCATTAAGGATTATAAGGATTATAATTAAGTAATAGAATAGAAATATATTTGAAATAGAATTCTCTCTAGAATT] [+] EMBL BI507942 [TTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAATCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTATGTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCGACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGATAATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTATGCCTTAAAGTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACCCAAAATCTTCACGTTCGTTGGGGCTGGTTTACCGTCGCAGGGTACATAAGCTTGCATCGAGTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTATATACTTCATTAAGGATTATAAGGATTATAATTAAGTAATAGAATAGAAATATATTTGAAATAGAATTCTCTCTAGAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_886#0 CGTGCCAATGATGAGCGACCGGGTCGATCGTTGTGCAGGGATGTGGGTCAGGCATACGCC 60 consensus_886#1 ------------------------------------------------------------ consensus_886#0 CGAACCCCCTGGATTTTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAA 120 consensus_886#1 ---------------TTCATCTCGTCCCTTTCTCCGATAAACATAGAATATTCTCTGGAA 45 ********************************************* consensus_886#0 TCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTAT 180 consensus_886#1 TCCTCGGAACTTTTCACAAAAAAATTTTCTTTATGACGATCATTATCTAAACTCGATTAT 105 ************************************************************ consensus_886#0 GTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCA 240 consensus_886#1 GTCTACTTATCTTGGAAATAGGAAAATAAATTTCGTCTGTCATAAAAGTACAATTAGTCG 165 *********************************************************** consensus_886#0 ACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGAT 300 consensus_886#1 ACAACTTTAGCTGGGATCTTGAAACATACTTCAGAATTGTTATTTTCGTCAACAAGAGAT 225 ************************************************************ consensus_886#0 AATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTAAGCCTTAAA 360 consensus_886#1 AATTGGATGGTCAGAGCAACTTTTGGATAGGCTTTCAGAACTGGCATCTTATGCCTTAAA 285 *************************************************** ******** consensus_886#0 GTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACC 420 consensus_886#1 GTCAACGTTAGCCTCAACATTAGTTCCTCTAACCAAATTGCAAGGCAGAGTATCGCAACC 345 ************************************************************ consensus_886#0 CAAAATCTTCACGTTCGTTGGGGCTGGTTTACCATCGCAAGGCACATAAGCTTGCATCGA 480 consensus_886#1 CAAAATCTTCACGTTCGTTGGGGCTGGTTTACCGTCGCAGGGTACATAAGCTTGCATCGA 405 ********************************* ***** ** ***************** consensus_886#0 GTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTGAGGATTGCCAT 540 consensus_886#1 GTTGGCGATGAAGAGCACCGCAAATACGTAAACTGCAATCACAAGTGTATATACT-TCAT 464 ************************************************ * * *** consensus_886#0 TTTGGATTGCTACTTCTTTCGTGTACAA-------------------------------- 568 consensus_886#1 TAAGGATTATAAGGATTATAATTAAGTAATAGAATAGAAATATATTTGAAATAGAATTCT 524 * ***** * * * * * * consensus_886#0 ---------- consensus_886#1 CTCTAGAATT 534 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |