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Apis mellifera
cluster # 904 cluster # 904       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_904#0 length = 587 sequences # 2  
 consensus_904#1 length = 506 sequences # 1  
consensusID : consensus_904#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 587
fasta sequence 
                              [TTTTTTTTTATGCTATTATTTCCTCAAGATTTATTTCCAATGGCATGGTCACGTATAGCACACAGAGAGCCAAGAGAAAATAATCGAGAGACGGATCGATTTTTGTGCGCGTGCATATTATGGTCGAGGTACAATATTACACTCGTGTGTATCGGCGAACAGCGAGAGCAGTGGAGGTCTCCGACTGGATCCGTGAATATTTTGCCCCTCTCGAGCGCGAAAGGAGGATCTTGGTTGCTTCACACTCCACACAGTGGAGGATATAATAATCGTAAAACGCGACGATACACTTTCTTTCGATTCGCAAAGAATTTTCTTCGATCTCTTAACGCTAGAAGAACGAAAAAAAGAAACAAGTGACAATGTTCCAATGTTCTCTTGGCGCGCCACGAGAATTATTATTCCTTCTCCCGTGATATATATATGTTTCGCCGTAAATGCGAAACGAGCACGCGTAGATAAAAAAAGAAAAATAGAAAATTATTCGCATCTACTTGATCGACATCTTCCTAAACGGTCTTTGCGTGCTCACGTGACGCTTTTTTTTTTTCTCTCTATGGCTTCTGTTTTGTTCCATTTTTTTTTTG]

[-] EMBL BI504220             [TTTTTTTTTATGCTATTATTTCCTCAAGATTTATTTCCAATGGCATGGTCACGTATAGCACACAGAGAGCCAAGAGAAAATAATCGAGAGACGGATCGATTTTTGTGCGCGTGCATATTATGGTCGAGGTACAATATTACACTCGTGTGTATCGGCGAACAGCGAGAGCAGTGGAGGTCTCCGACTGGATCCGTGAATATTTTGCCCCTCTCGAGCGCGAAAGGAGGATCTTGGTTGCTTCACACTCCACACAGTGGAGGATATAATAATCGTAAAACGCGACGATACACTTTCTTTCGATTCGCAAAGAATTTTCTTCGATCTCTTAACGCTAGAAGAACGAAAAAAAGAAACAAGTGACAATGTTCCAATGTTCTCTTGGCGCGCCACGAGAATTATTATTCCTTCTCCCGTGATATATATATGTTTCGTCGTAAATGCGAAACGAGCACGCGTAGATAAAAAACGAAAAATAGAAAATTATTCGCATCTACTTGATCGACATCTTCCTAAACGGTCTTTGCGTGCTCACGTGACGCTTTTTTTTTTTCTCTCTATGGCTTCTGTTTTGTTCCATTTTTTTTTTG]
[+] EMBL BI503401             [                                           CATGGTCACGTATAGCACACAGAGAGCCAAGAGAAAATAATCGAGAGACGGATCGATTTTTGTGCGCGTGCATATTATGGTCGAGGTACAATATTACACTCGTGTGTATCGGCGAACAGCGAGAGCAGTGGAGGTCTCCGACTGGATCCGTGAATATTTTGCCCCTCTCGAGCGCGAAAGGAGGATCTTGGTTGCTTCACACTCCACACAGTGGAGGATATAATAATCGTAAAACGCGACGATACACTTTCTTTCGATTCGCAAAGAATTTTCTTCGATCTCTTAACGCTAGAAGAACGAAAAAAAGAAACAAGTGACAATGTTCCAATGTTCTCTTGGCGCGCCACGAGAATTATTATTCCTTCTCCCGTGATATATAT TGTTTCGCCGTAAATGCGAAACGAGCACGCGTAGATAAAAAAAAAAA                                                                                                                    ]




>consensus_904#0
TTTTTTTTTATGCTATTATTTCCTCAAGATTTATTTCCAATGGCATGGTCACGTATAGCA
CACAGAGAGCCAAGAGAAAATAATCGAGAGACGGATCGATTTTTGTGCGCGTGCATATTA
TGGTCGAGGTACAATATTACACTCGTGTGTATCGGCGAACAGCGAGAGCAGTGGAGGTCT
CCGACTGGATCCGTGAATATTTTGCCCCTCTCGAGCGCGAAAGGAGGATCTTGGTTGCTT
CACACTCCACACAGTGGAGGATATAATAATCGTAAAACGCGACGATACACTTTCTTTCGA
TTCGCAAAGAATTTTCTTCGATCTCTTAACGCTAGAAGAACGAAAAAAAGAAACAAGTGA
CAATGTTCCAATGTTCTCTTGGCGCGCCACGAGAATTATTATTCCTTCTCCCGTGATATA
TATATGTTTCGCCGTAAATGCGAAACGAGCACGCGTAGATAAAAAAAGAAAAATAGAAAA
TTATTCGCATCTACTTGATCGACATCTTCCTAAACGGTCTTTGCGTGCTCACGTGACGCT
TTTTTTTTTTCTCTCTATGGCTTCTGTTTTGTTCCATTTTTTTTTTG

consensusID : consensus_904#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence 
                              [CATGGTCACGTATAGCACACAGAGAGCCAAGAGAAAATAATCGAGAGACGGATCGATTTTTGTGCGCGTGCATATTATGGTCGAGGTACAATATTACACTCGTGTGTATCGGCGAACAGCGAGAGCAGTGGAGGTCTCCGACTGGATCCGTGAATATTTTGCCCCTCTCGAGCGCGAAAGGAGGATCTTGGTTGCTTCACACTCCACACAGTGGAGGATATAATAATCGTAAAACGCGACGATACACTTTCTTTCGATTCGCAAAGAATTTTCTTCGATCTCTTAACGCTAGAAGAACGAAAAAAAGAAACAAGTGACAATGTTCCAATGTTCTCTTGGCGCGCCACGAGAATTATTATTCCTTCTCCCGTGATATATATATGTTTCGTCGTAAATGCGAAACGAGCACGCGTAGATAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAGAGAGAAGAAAAAAAGAAAGTCGGCTTTTTATTGTAATACGAAGCAAAAAAAAAAAAAA]

[+] EMBL BI508912             [CATGGTCACGTATAGCACACAGAGAGCCAAGAGAAAATAATCGAGAGACGGATCGATTTTTGTGCGCGTGCATATTATGGTCGAGGTACAATATTACACTCGTGTGTATCGGCGAACAGCGAGAGCAGTGGAGGTCTCCGACTGGATCCGTGAATATTTTGCCCCTCTCGAGCGCGAAAGGAGGATCTTGGTTGCTTCACACTCCACACAGTGGAGGATATAATAATCGTAAAACGCGACGATACACTTTCTTTCGATTCGCAAAGAATTTTCTTCGATCTCTTAACGCTAGAAGAACGAAAAAAAGAAACAAGTGACAATGTTCCAATGTTCTCTTGGCGCGCCACGAGAATTATTATTCCTTCTCCCGTGATATATATATGTTTCGTCGTAAATGCGAAACGAGCACGCGTAGATAAAAAAAGAAAAGAAAAGAAAAGAAAAGAAGAGAGAAGAAAAAAAGAAAGTCGGCTTTTTATTGTAATACGAAGCAAAAAAAAAAAAAA]




>consensus_904#1
CATGGTCACGTATAGCACACAGAGAGCCAAGAGAAAATAATCGAGAGACGGATCGATTTT
TGTGCGCGTGCATATTATGGTCGAGGTACAATATTACACTCGTGTGTATCGGCGAACAGC
GAGAGCAGTGGAGGTCTCCGACTGGATCCGTGAATATTTTGCCCCTCTCGAGCGCGAAAG
GAGGATCTTGGTTGCTTCACACTCCACACAGTGGAGGATATAATAATCGTAAAACGCGAC
GATACACTTTCTTTCGATTCGCAAAGAATTTTCTTCGATCTCTTAACGCTAGAAGAACGA
AAAAAAGAAACAAGTGACAATGTTCCAATGTTCTCTTGGCGCGCCACGAGAATTATTATT
CCTTCTCCCGTGATATATATATGTTTCGTCGTAAATGCGAAACGAGCACGCGTAGATAAA
AAAAGAAAAGAAAAGAAAAGAAAAGAAGAGAGAAGAAAAAAAGAAAGTCGGCTTTTTATT
GTAATACGAAGCAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_904#0      TTTTTTTTTATGCTATTATTTCCTCAAGATTTATTTCCAATGGCATGGTCACGTATAGCA 60
consensus_904#1      -------------------------------------------CATGGTCACGTATAGCA 17
                                                                *****************

consensus_904#0      CACAGAGAGCCAAGAGAAAATAATCGAGAGACGGATCGATTTTTGTGCGCGTGCATATTA 120
consensus_904#1      CACAGAGAGCCAAGAGAAAATAATCGAGAGACGGATCGATTTTTGTGCGCGTGCATATTA 77
                     ************************************************************

consensus_904#0      TGGTCGAGGTACAATATTACACTCGTGTGTATCGGCGAACAGCGAGAGCAGTGGAGGTCT 180
consensus_904#1      TGGTCGAGGTACAATATTACACTCGTGTGTATCGGCGAACAGCGAGAGCAGTGGAGGTCT 137
                     ************************************************************

consensus_904#0      CCGACTGGATCCGTGAATATTTTGCCCCTCTCGAGCGCGAAAGGAGGATCTTGGTTGCTT 240
consensus_904#1      CCGACTGGATCCGTGAATATTTTGCCCCTCTCGAGCGCGAAAGGAGGATCTTGGTTGCTT 197
                     ************************************************************

consensus_904#0      CACACTCCACACAGTGGAGGATATAATAATCGTAAAACGCGACGATACACTTTCTTTCGA 300
consensus_904#1      CACACTCCACACAGTGGAGGATATAATAATCGTAAAACGCGACGATACACTTTCTTTCGA 257
                     ************************************************************

consensus_904#0      TTCGCAAAGAATTTTCTTCGATCTCTTAACGCTAGAAGAACGAAAAAAAGAAACAAGTGA 360
consensus_904#1      TTCGCAAAGAATTTTCTTCGATCTCTTAACGCTAGAAGAACGAAAAAAAGAAACAAGTGA 317
                     ************************************************************

consensus_904#0      CAATGTTCCAATGTTCTCTTGGCGCGCCACGAGAATTATTATTCCTTCTCCCGTGATATA 420
consensus_904#1      CAATGTTCCAATGTTCTCTTGGCGCGCCACGAGAATTATTATTCCTTCTCCCGTGATATA 377
                     ************************************************************

consensus_904#0      TATATGTTTCGCCGTAAATGCGAAACGAGCACGCGTAGATAAAAAAAGAAAAATAGAAAA 480
consensus_904#1      TATATGTTTCGTCGTAAATGCGAAACGAGCACGCGTAGATAAAAAAAGAAAAGAAAAGAA 437
                     *********** ****************************************  * * **

consensus_904#0      TTATTCGCATCTACTTGATCGACATCTTCCTAAACGGTCTTTGCGTGCTCACGTGACGCT 540
consensus_904#1      A----AGAAAAGAAGAGAGAAGAAAAAAAGAAAGTCGGCTTTTTATTGTAATACGAAGCA 493
                           * *   *   **     *       **   * ****   *  * *   ** ** 

consensus_904#0      TTTTTTTTTTCTCTCTATGGCTTCTGTTTTGTTCCATTTTTTTTTTG 587
consensus_904#1      AAAAAAAAAAAAA---------------------------------- 506


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)