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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 680 fasta sequence
[ATTACAGGTTCCCAAAATTTACATAAACTTTCTAACTGCGCCTGAATAAAAGGTAAGGGAAATACGCGCAAGTTTCGAGTATTGCTTTAAATGTGTCTTTTAAAAATATTAAAAAAAAGAAATAAGAATAGACGCTTCAAGTTTAAAAGAAGAGTAATGTTGACGTTAGAACTCGAAGGGATGCATTGTCTCTGGAACAAACACGCCACGATTTCTACAGTTGTAGTTGTTAAAGCTGGCCCCTCGGGTTTTACGGTGCATGTTGTCTGGCCACAGTAGTAAAAGGAAATGCACCGTTGCACCAACCGGCCGTTACGCATGGACCGTCTCGCGCGCAATGATCCGCTTCTGCATATAAAACGTAATTTTGGTTAAACGGCCTGCGCTCGTTCCATGGGTCCCTTGTATTCCTATCATTCCCACGAGAAAAGTGGTTCACGCCGCGCTCCTCGACTCGCTTTTTGCCTAAGTAACCCTGGCGGTTTCGGTTTTGCGATATGGCCCTCGTAAAAAGTCCCATCCTTCGTCCCCTCCCCCCTCCAAGCTGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAGAATCACGTTGATTGAAAAGTGAAATACACGATATTACGCAGTATATTCTATACTAAGAGTGGCGTATATACACTATTTTTA]
[+] EMBL BI516713 [ATTACAGGTTCCCAAAATTTACATAAACTTTCTAACTGCGCCTGAATAAAAGGTAAGGGAAATACGCGCAAGTTTCGAGTATTGCTTTAAATGTGTCTTTTAAAAATATTAAAAAAAAGAAATAAGAATAGACGCTTCAAGTTTAAAAGAAGAGTAATGTTGACGTTAGAACTCGAAGGGATGCATTGTCTCTGGAACAAACACGCCACGATTTCTACAGTTGTAGTTGTTAAAGCTGGCCCCTCGGGTTTTACGGTGCATGTTGTCTGGCCACAGTAGTAAAAGGAAATGCACCGTTGCACCAACCGGCCGTTACGCATGGACCGTCTCGCGCGCAATGATCCGCTTCTGCATATAAAACGTAATTTTGGTTAAA ]
[-] EMBL BI517199 [ GCCCCTCGGGTTTTACGGTGCATGTTGTCTGGCCACAGTAGTAAAAGGAAATGCACCGTTGCACCAACCGGCCGTTACGCATGGACCGTCTCGCGCGCAATGATCCGCTTCTGCATATAAAACGTAATTTTGGTTAAACGGCCTGCGCTCGTTCCATGGGTCCCTTGTATTCCTATCATTCCCACGAGAAAAGTGGTTCACGCCGCGCTCCTCGACTCGCTTTTTGCCTAAGTAACCCTGGCGGTTTCGGTTTTGCGATATGGCCCTCGTAAAAAGTCCCATCCTTCGTCCCCTCCCCCCTCCAAGCTGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAGAATCACGTTGATTGAAAAGTGAAATACACGATATTACGCAGTATATTCTATACTAAGAGTGGCGTATATACACTATTTTTA]
consensusID : consensus_911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence
[TTCCACGGGCGTCGATGATTCTCGTTCCACCTGGTATTATTAAATTACGGCCCATTTGCTTTATGATACCATCTTCGATATAAACGTCGTTGTCCGTGATCCCATCGTCGTTTACNNNCTTGCCGTTNNTAATCAACAGCCTGTTTTGCGCGCTCTGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAGAATCACGTTGATTGAAAAGTGAAATANNNGATATTACGCAGTATATTCTATACTAAGAGTGGCGTATATACACTATTTTTACTTGTGAAAAACGCCTCACTTGCGCAAAAATTTTCTTAAAGTGAAAATCAAAA]
[-] EMBL BI513236 [TTCCACGGGCGTCGATGATTCTCGTTCCACCTGGTATTATTAAATTACGGCCCATTTGCTTTATGATACCATCTTCGATATAAACGTCGTTGTCCGTGATCCCATCGTCGTTTACNNNCTTGCCGTTNNTAATCAACAGCCTGTTTTGCGCGCTCTGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAGAATCACGTTGATTGAAAAGTGAAATANNNGATATTACGCAGTATATTCTATACTAAGAGTGGCGTATATACACTATTTTTACTTGTGAAAAACGCCTCACTTGCGCAAAAATTTTCTTAAAGTGAAAATCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_911#0 ATTACAGGTTCCCAAAATTTACATAAACTTTCTAACTGCGCCTGAATAAAAGGTAAGGGA 60
consensus_911#1 ------------------------------------------------------------
consensus_911#0 AATACGCGCAAGTTTCGAGTATTGCTTTAAATGTGTCTTTTAAAAATATTAAAAAAAAGA 120
consensus_911#1 ------------------------------------------------------------
consensus_911#0 AATAAGAATAGACGCTTCAAGTTTAAAAGAAGAGTAATGTTGACGTTAGAACTCGAAGGG 180
consensus_911#1 ------------------------------------------------------------
consensus_911#0 ATGCATTGTCTCTGGAACAAACACGCCACGATTTCTACAGTTGTAGTTGTTAAAGCTGGC 240
consensus_911#1 ------------------------------------------------------------
consensus_911#0 CCCTCGGGTTTTACGGTGCATGTTGTCTGGCCACAGTAGTAAAAGGAAATGCACCGTTGC 300
consensus_911#1 ------------------------------------------------------------
consensus_911#0 ACCAACCGGCCGTTACGCATGGACCGTCTCGCGCGCAATGATCCGCTTCTGCATATAAAA 360
consensus_911#1 ------------------------------------------------------------
consensus_911#0 CGTAATTTTGGTTAAACGGCCTGCGCTCGTTCCATGGGTCCCTTGTATTCCTATCATTCC 420
consensus_911#1 -----------TTCCACGGGCGTCGATGATTCTCGTTCCACCTGGTATTATTAA-ATT-- 46
** **** * ** * *** *** ***** ** ***
consensus_911#0 CACGAGAAAAGTGGTTCACGCCGCGCTCCTCGACTCGCTTTTTGCC-TAAGTAACCCTGG 479
consensus_911#1 -ACGGCCCATTTGCTTTATGATACCATCTTCGATATAAACGTCGTTGTCCGTGATCCCAT 105
*** * ** ** * * * ** **** * * * ** * **
consensus_911#0 CGGTTTCGGTTTTGCGATATGGCCCTCGTAAAAAGTCCCATCCTTCGTCCCCTCCCCCCT 539
consensus_911#1 CGTC----GTTTACNNNCTTGCCGTTNNTAATCAACAGCCTGTTTTGCGCGCTC------ 155
** **** ** * * *** * * * ** * * ***
consensus_911#0 CCAAGCTGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAG 599
consensus_911#1 ------TGCAGGTGAATAGGCACTTTCTTCACCGGCGTGCTCATTTTTGATTAAAGAAAG 209
******************************************************
consensus_911#0 AATCACGTTGATTGAAAAGTGAAATACACGATATTACGCAGTATATTCTATACTAAGAGT 659
consensus_911#1 AATCACGTTGATTGAAAAGTGAAATANNNGATATTACGCAGTATATTCTATACTAAGAGT 269
************************** *******************************
consensus_911#0 GGCGTATATACACTATTTTTA--------------------------------------- 680
consensus_911#1 GGCGTATATACACTATTTTTACTTGTGAAAAACGCCTCACTTGCGCAAAAATTTTCTTAA 329
*********************
consensus_911#0 --------------
consensus_911#1 AGTGAAAATCAAAA 343
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |