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Apis mellifera
cluster # 913 cluster # 913       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_913#0 length = 604 sequences # 2  
 consensus_913#1 length = 385 sequences # 1  
consensusID : consensus_913#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 604
fasta sequence 
                              [CGTCAAGAACATTTTTATCGAATTTGACTAAAAAAAAAAAAGAACCCCGTTATTTTATGTATTACGTAGTAAAGATTTTTTTTTCGATTACACTATCTACTTACGAAATGTCTTCGTATCATTTCAAAGTACAAATCGAAATCATATTTTTCTCATTTGATTGTTCATTCATTTATTATATATATACATATATGTAATCGTCTATTTAATGATCTGTCTACGTCTTCAGGGTATTTTTATCGAGCTATGTAACTGAGTGAGAGAGAGCGATTGAGAGTTTTTTCCACAAAAATATTTCATTGAAAAGAAAGTATTTTTCATTCAGACGAGTATATATCACGATAGATTTTGAGCGATGATAATTTGTTTGATATTTAACACGATAACACGAATTAAACCGACCATCCGCTGAAATGGGGTTATGTTACGAGAGAATCGAACGGAAAAAAAAAAGAAAAAACGAAGAAAACGTTACGCAATCCTACGAGTGGGGCTGNNNGTGCGTGCGTGCGAGGAACCTGGTTGTATTATGTATAAATGTTGATAACTAGTTGATAGGAACGTGAAAAATACTTGTCGCACCGTTAAATATGATCGCGCGTTT]

[-] EMBL BI506126             [CGTCAAGAACATTTTTATCGAATTTGACTAAAAAAAAAAAAGAACCCCGTTATTTTATGTATTACGTAGTAAAGATTTTTTTTTCGATTACACTATCTACTTACGAAATGTCTTCGTATCATTTCAAAGTACAAATCGAAATCATATTTTTCTCATTTGATTGTTCATTCATTTATTATATATATACATATATGTAATCGTCTATTTAATGATCTGTCTACGTCTTCAGGGTATTTTTATCGAGCTATGTAACTGAGTGAGAGAGAGCGATTGAGAGTTTTTTCCACAAAAATATTTCATTGAAAAGAAAGTATTTTTCATTCAGACGAGTATATATCACGATAGATTTTGAGCGATGATAATTTGTTTGATATTTAACACGATAACACGAATTAAACCGACCATCCGCTGAAATGGGGTTA                                                                                                                                                                                      ]
[+] EMBL BI516238             [                                                                                                                              AAGTACAAATCGAAATCATATTTTTCTCATTTGATTGTTCATTCATTTATTATATATATACATATATGTAATCGTCTATTTAATGATCTGTCTACGTCTTCAGGGTATTTTTATCGAGCTATGTAACTGAGTGAGAGAGAGCGATTGAGAGTTTTTTCCACAAAAATATTTCATTGAAAAGAAAGTATTTTTCATTCAGACGAGTATATATCACGATAGATTTTGAGCGATGATAATTTGTTTGATATTTAACACGATAACACGAATTAAACCGACCATCCGCTGAAATGGGGTTATGTTACGAGAGAATCGAACGGAAAAAAAAAAGAAAAAACGAAGAAAACGTTACGCAATCCTACGAGTGGGGCTGNNNGTGCGTGCGTGCGAGGAACCTGGTTGTATTATGTATAAATGTTGATAACTAGTTGATAGGAACGTGAAAAATACTTGTCGCACCGTTAAATATGATCGCGCGTTT]




>consensus_913#0
CGTCAAGAACATTTTTATCGAATTTGACTAAAAAAAAAAAAGAACCCCGTTATTTTATGT
ATTACGTAGTAAAGATTTTTTTTTCGATTACACTATCTACTTACGAAATGTCTTCGTATC
ATTTCAAAGTACAAATCGAAATCATATTTTTCTCATTTGATTGTTCATTCATTTATTATA
TATATACATATATGTAATCGTCTATTTAATGATCTGTCTACGTCTTCAGGGTATTTTTAT
CGAGCTATGTAACTGAGTGAGAGAGAGCGATTGAGAGTTTTTTCCACAAAAATATTTCAT
TGAAAAGAAAGTATTTTTCATTCAGACGAGTATATATCACGATAGATTTTGAGCGATGAT
AATTTGTTTGATATTTAACACGATAACACGAATTAAACCGACCATCCGCTGAAATGGGGT
TATGTTACGAGAGAATCGAACGGAAAAAAAAAAGAAAAAACGAAGAAAACGTTACGCAAT
CCTACGAGTGGGGCTGNNNGTGCGTGCGTGCGAGGAACCTGGTTGTATTATGTATAAATG
TTGATAACTAGTTGATAGGAACGTGAAAAATACTTGTCGCACCGTTAAATATGATCGCGC
GTTT

consensusID : consensus_913#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence 
                              [ATGCTCTACGGTAAGGACAGCGACCGTTTATATTAGTACTCTGTGTGTGTGTGTGTGGTAATATTTATATATATATATATATATATATATATATATATATATATATATATAATATATATTTCAACGTACAAACTATATTGTACCTTAATAACCTCTAAACGCAATGGGTACAAGGATAATATTTACACAGCCTAGAACCACTTGACCAGGTCCAGGATCACGCGATATACCATTTCTTTCAAAGAGGTTCAAAGATTCGACGACAGTCAAGTCCAACCTAACCTCCTTGTTCTAAGTTGAACGCGCGACAAACGCGCGATCATATTTAACGGTGCGACAAGTATTTTTCACGTTCCTATCAACTAGTTATCAACATTTATACATA]

[+] EMBL BI511680             [ATGCTCTACGGTAAGGACAGCGACCGTTTATATTAGTACTCTGTGTGTGTGTGTGTGGTAATATTTATATATATATATATATATATATATATATATATATATATATATATAATATATATTTCAACGTACAAACTATATTGTACCTTAATAACCTCTAAACGCAATGGGTACAAGGATAATATTTACACAGCCTAGAACCACTTGACCAGGTCCAGGATCACGCGATATACCATTTCTTTCAAAGAGGTTCAAAGATTCGACGACAGTCAAGTCCAACCTAACCTCCTTGTTCTAAGTTGAACGCGCGACAAACGCGCGATCATATTTAACGGTGCGACAAGTATTTTTCACGTTCCTATCAACTAGTTATCAACATTTATACATA]




>consensus_913#1
ATGCTCTACGGTAAGGACAGCGACCGTTTATATTAGTACTCTGTGTGTGTGTGTGTGGTA
ATATTTATATATATATATATATATATATATATATATATATATATATATATAATATATATT
TCAACGTACAAACTATATTGTACCTTAATAACCTCTAAACGCAATGGGTACAAGGATAAT
ATTTACACAGCCTAGAACCACTTGACCAGGTCCAGGATCACGCGATATACCATTTCTTTC
AAAGAGGTTCAAAGATTCGACGACAGTCAAGTCCAACCTAACCTCCTTGTTCTAAGTTGA
ACGCGCGACAAACGCGCGATCATATTTAACGGTGCGACAAGTATTTTTCACGTTCCTATC
AACTAGTTATCAACATTTATACATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_913#0      CGTCAAGAACATTTTTATCGAATTTGACTAAAAAAAAAAAAGAACCCCGTTATTTTATGT 60
consensus_913#1      ------------------------------------------------------------
                                                                                 

consensus_913#0      ATTACGTAGTAAAGATTTTTTTTTCGATTACACTATCTACTTACGAAATGTCTTCGTATC 120
consensus_913#1      ------------------------------------------------------------
                                                                                 

consensus_913#0      ATTTCAAAGTACAAATCGAAATCATATTTTTCTCATTTGATTGTTCATTCATTTATTATA 180
consensus_913#1      ----------------------------------------------------ATGCTCTA 8
                                                                          *  * **

consensus_913#0      TATATACATATATGTAATCGTCTAT-TTAATGATCTGTCTACGTCTTCAGGGTATTTTTA 239
consensus_913#1      CG-GTAAGGACA-GCGACCGTTTATATTAGTACTCTGTGTGTGTGTGTGTGGTAAT---A 63
                         **   * * *  * *** *** *** *  ***** *  ** *    **** *   *

consensus_913#0      TCGAGCTATGTAACTGAGTGAGAGAGAGCGATTGAGAGTTTTTTCCACAAAA-ATATTTC 298
consensus_913#1      TTTATATATATATATATAT-ATATATATATATATATATATATATATATAATATATATTTC 122
                     *  *  *** **  *   * * * * *   **  * *  * * *  * ** * *******

consensus_913#0      ATTGAAAAGAAAGTATTTTTCATTCAGACGAGTATATATCACGATAGATTTTGAGCGATG 358
consensus_913#1      AACGTACA--AACTATATTGTACCTTAATAACCTCTAAACGCAATGGGT-----ACAAGG 175
                     *  * * *  ** *** **  *     *  *      * * * ** * *      * * *

consensus_913#0      ATAATTTGTTTGATATTTAACACGATAACACGAATTAAACCGACCATCCGCTGAAATGGG 418
consensus_913#1      ATAATATTTACACAGCCTAGAACCAC----TTGACCAGGTCCAGGATCACGCGATATACC 231
                     ***** * *        **  ** *        *  *   * *  ***    ** **   

consensus_913#0      GTTATGTTACGAGAGAATCGAACGGAAAAAAAAAAGAAAAAACGAAGAAAACGTTACGCA 478
consensus_913#1      ATTTCTTTCAAAGAGGTTC-------------AAAGATTCGACGACAGTCAAGTC---CA 275
                      **   **   ****  **             *****    ****     * **    **

consensus_913#0      ATCCTACGAGTGGGGCTGNNNGTGCGTGCGTGCGAGGAACCTGGTTGTATTATGTATAAA 538
consensus_913#1      ACCTAACCTCCTTGTTCTAAGTTGAACGCGCGACAAACGCGCGATCATATT---TAACGG 332
                     * *  **      *        **   *** *  *    *  * *  ****   **    

consensus_913#0      TGTTGATAACTAGTTGATAGGAACGTGAAAAATACTTGTCGCACCGTTAAATATGATCGC 598
consensus_913#1      TGC-GACAAGTATTTTTCACGTTCCTATCAACTAGTTATCA-ACATTTATACATA----- 385
                     **  ** ** ** **   * *  * *   ** ** ** **  **  *** * **      

consensus_913#0      GCGTTT 604
consensus_913#1      ------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)