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Apis mellifera
cluster # 919 cluster # 919       Sequences # 3       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_919#0 length = 622 sequences # 2  
 consensus_919#1 length = 450 sequences # 1  
consensusID : consensus_919#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 622
fasta sequence 
                              [TTTTTTTTCAGAATAGATACTATCCATATCTTTCTTTAATACTATTAGTTTCGAAATAGGACGAAGAATACGCGAGTATACGGATATTGGATCGAGAATTGTTCCATGATGATTATCGTTACGTTATTCGAAAGTTTACGCGAAAGTTTGTAAGCTCGATATTCAAATAAATCGCGACGAGAAAGATAAAAAATGGCGTAAAATTTCGAGGGATCAACGAAAGGATTCGCATGCGATTCGTACTCGAAGCGGACTCGACGAGGAAAATGGAAAAGCAAAGACCCGAGGCCCGATTCCCTGCTATATTGTTTCTATCGTTCGATTTACTTTCCTCTTTTGTGTGTGTTTTGCGTGTGTGTGTTGTTTTTTTTTCGTTCTCTCTTCAAATGAAATTGTGTGTATTTTTCTTTGTGTGCTATATATATATGTGTGTATATATATGTATATATATATATATAGTACAAAAGGAAAGATAGGTGTAAATATAGACACGCTTTTGTAGATTAATTTCCGATTATTTTGCGATTATTTGATTGATATTATATCGATTATATATCAAGTTTATAATAATATCTTTGAAACAGTGGACATTGTTTATAATATATTGCACATAATTTTTCTT]

[-] EMBL BI506198             [TTTTTTTTCAGAATAGATACTATCCATATCTTTCTTTAATACTATTAGTTTCGAAATAGGACGAAGAATACGCGAGTATACGGATATTGGATCGAGAATTGTTCCATGATGATTATCGTTATATTATTCGAAAGTTTACGCGAA  TTTGTAAGCTCGATATTCAAATAAATCGCGACGAGAAAGATAAAAAATGGCGTAAAATTTCGAGGGATCAACGAAAGGATTCGCATGCGATTCGTACTCGAAGCGGACTCGACGAGGAAAATGGAAAAGCAAAGACCCGAGGCCCGATTCCCTGCTATATTGTTTCTATCGTTCGATTTACTTTCCTCTTT                                                                                                                                                                                                                                                                                             ]
[+] EMBL BI503588             [                             CTTTCTTTAATACTATTAGTTTCGAAATAGGACGAAGAATACGCGAGTATACGGATATTGGATCGAGAATTGTTCCATGATGATTATCGTTACGTTATTCGAAAGTTTACGTGAAAGTTTGTAAGCTCGATATTCAAATAAATCGCAACGAGAAAGATAAAAAATGGCGTAAAATTTCGAGGGATCAACGAAAGGATTCGCATGCGATTCGTACTCGAAGCGGACTCGACGAGGAAAATGGAAAAGCAAAGACCCGAGGCCCGATTCCCTGCTATATTGTTTCTATCGTTCGATTTACTTTCCTCTTTTGTGTGTGTTTTGCGTGTGTGTGTTGTTTTTTTTTCGTTCTCTCTTCAAATGAAATTGTGTGTATTTTTCTTTGTGTGCTATATATATATGTGTGTATATATATGTATATATATATATATAGTACAAAAGGAAAGATAGGTGTAAATATAGACACGCTTTTGTAGATTAATTTCCGATTATTTTGCGATTATTTGATTGATATTATATCGATTATATATCAAGTTTATAATAATATCTTTGAAACAGTGGACATTGTTTATAATATATTGCACATAATTTTTCTT]




>consensus_919#0
TTTTTTTTCAGAATAGATACTATCCATATCTTTCTTTAATACTATTAGTTTCGAAATAGG
ACGAAGAATACGCGAGTATACGGATATTGGATCGAGAATTGTTCCATGATGATTATCGTT
ACGTTATTCGAAAGTTTACGCGAAAGTTTGTAAGCTCGATATTCAAATAAATCGCGACGA
GAAAGATAAAAAATGGCGTAAAATTTCGAGGGATCAACGAAAGGATTCGCATGCGATTCG
TACTCGAAGCGGACTCGACGAGGAAAATGGAAAAGCAAAGACCCGAGGCCCGATTCCCTG
CTATATTGTTTCTATCGTTCGATTTACTTTCCTCTTTTGTGTGTGTTTTGCGTGTGTGTG
TTGTTTTTTTTTCGTTCTCTCTTCAAATGAAATTGTGTGTATTTTTCTTTGTGTGCTATA
TATATATGTGTGTATATATATGTATATATATATATATAGTACAAAAGGAAAGATAGGTGT
AAATATAGACACGCTTTTGTAGATTAATTTCCGATTATTTTGCGATTATTTGATTGATAT
TATATCGATTATATATCAAGTTTATAATAATATCTTTGAAACAGTGGACATTGTTTATAA
TATATTGCACATAATTTTTCTT

consensusID : consensus_919#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence 
                              [TTTTTTTTTAGAATAGATACTATCCATATCTTTCTTTAATACTATTAGTTTCGAAATAGGACGAAGAATACGCGAGTATACGGATATTGGATCGAGAATTGTTCCATGATGATTATCGTTACGTTATTCGAAAGTTTACGTGAAAGTTTGTAAGCTCGATATTCAAATAAATCGCAACGAGAAAGATAAAAAATGGCGTAAAATTTCGAGGGATCAACGAAAGGATTCGCATGCGATTCGTACTCGAAGCGGACTCGACGAGGAAAATGGAAAAGCAAAGACCCGAGGCCCGATTCCCTGCTATATTGTTTCTATCGTTCGATTTACTTTCCTCTTTTGTGTGTGTTTTGCGTGTGTGTGTTGTTTTTTTTTCGTTCTCTCTCACTCTCTCTCTTTTTTTTGTCGTCTCTCTTTTTTATTCTTTTTTCTTTTTTTTTTCTTTTTCTTCTT]

[-] EMBL BI503325             [TTTTTTTTTAGAATAGATACTATCCATATCTTTCTTTAATACTATTAGTTTCGAAATAGGACGAAGAATACGCGAGTATACGGATATTGGATCGAGAATTGTTCCATGATGATTATCGTTACGTTATTCGAAAGTTTACGTGAAAGTTTGTAAGCTCGATATTCAAATAAATCGCAACGAGAAAGATAAAAAATGGCGTAAAATTTCGAGGGATCAACGAAAGGATTCGCATGCGATTCGTACTCGAAGCGGACTCGACGAGGAAAATGGAAAAGCAAAGACCCGAGGCCCGATTCCCTGCTATATTGTTTCTATCGTTCGATTTACTTTCCTCTTTTGTGTGTGTTTTGCGTGTGTGTGTTGTTTTTTTTTCGTTCTCTCTCACTCTCTCTCTTTTTTTTGTCGTCTCTCTTTTTTATTCTTTTTTCTTTTTTTTTTCTTTTTCTTCTT]




>consensus_919#1
TTTTTTTTTAGAATAGATACTATCCATATCTTTCTTTAATACTATTAGTTTCGAAATAGG
ACGAAGAATACGCGAGTATACGGATATTGGATCGAGAATTGTTCCATGATGATTATCGTT
ACGTTATTCGAAAGTTTACGTGAAAGTTTGTAAGCTCGATATTCAAATAAATCGCAACGA
GAAAGATAAAAAATGGCGTAAAATTTCGAGGGATCAACGAAAGGATTCGCATGCGATTCG
TACTCGAAGCGGACTCGACGAGGAAAATGGAAAAGCAAAGACCCGAGGCCCGATTCCCTG
CTATATTGTTTCTATCGTTCGATTTACTTTCCTCTTTTGTGTGTGTTTTGCGTGTGTGTG
TTGTTTTTTTTTCGTTCTCTCTCACTCTCTCTCTTTTTTTTGTCGTCTCTCTTTTTTATT
CTTTTTTCTTTTTTTTTTCTTTTTCTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_919#0      TTTTTTTTCAGAATAGATACTATCCATATCTTTCTTTAATACTATTAGTTTCGAAATAGG 60
consensus_919#1      TTTTTTTTTAGAATAGATACTATCCATATCTTTCTTTAATACTATTAGTTTCGAAATAGG 60
                     ******** ***************************************************

consensus_919#0      ACGAAGAATACGCGAGTATACGGATATTGGATCGAGAATTGTTCCATGATGATTATCGTT 120
consensus_919#1      ACGAAGAATACGCGAGTATACGGATATTGGATCGAGAATTGTTCCATGATGATTATCGTT 120
                     ************************************************************

consensus_919#0      ACGTTATTCGAAAGTTTACGCGAAAGTTTGTAAGCTCGATATTCAAATAAATCGCGACGA 180
consensus_919#1      ACGTTATTCGAAAGTTTACGTGAAAGTTTGTAAGCTCGATATTCAAATAAATCGCAACGA 180
                     ******************** ********************************** ****

consensus_919#0      GAAAGATAAAAAATGGCGTAAAATTTCGAGGGATCAACGAAAGGATTCGCATGCGATTCG 240
consensus_919#1      GAAAGATAAAAAATGGCGTAAAATTTCGAGGGATCAACGAAAGGATTCGCATGCGATTCG 240
                     ************************************************************

consensus_919#0      TACTCGAAGCGGACTCGACGAGGAAAATGGAAAAGCAAAGACCCGAGGCCCGATTCCCTG 300
consensus_919#1      TACTCGAAGCGGACTCGACGAGGAAAATGGAAAAGCAAAGACCCGAGGCCCGATTCCCTG 300
                     ************************************************************

consensus_919#0      CTATATTGTTTCTATCGTTCGATTTACTTTCCTCTTTTGTGTGTGTTTTGCGTGTGTGTG 360
consensus_919#1      CTATATTGTTTCTATCGTTCGATTTACTTTCCTCTTTTGTGTGTGTTTTGCGTGTGTGTG 360
                     ************************************************************

consensus_919#0      TTGTTTTTTTTTCGTTCTCTCTTCAAATGAAATTGTGTGTATTTTTCTTTGTGTGCTATA 420
consensus_919#1      TTGTTTTTTTTTCGTTCTCTCTC------ACTCTCTCTCTTTTTTTTGTCGTCTCTCTTT 414
                     **********************       *   * * * * *****  * ** *    * 

consensus_919#0      TATATATGTGTGTATATATATGTATATATATATATATAGTACAAAAGGAAAGATAGGTGT 480
consensus_919#1      TTTATTCTTTTTTCTTTTTTTTTTCTTTTTCTTCTT------------------------ 450
                     * ***   * * * * * * * *   * *   * *                         

consensus_919#0      AAATATAGACACGCTTTTGTAGATTAATTTCCGATTATTTTGCGATTATTTGATTGATAT 540
consensus_919#1      ------------------------------------------------------------
                                                                                 

consensus_919#0      TATATCGATTATATATCAAGTTTATAATAATATCTTTGAAACAGTGGACATTGTTTATAA 600
consensus_919#1      ------------------------------------------------------------
                                                                                 

consensus_919#0      TATATTGCACATAATTTTTCTT 622
consensus_919#1      ----------------------


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)