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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 542 fasta sequence
[ATCGAGGTGCATCTTCGTGGTGCACTACTACTCGTATTTCGCGGTTAAACACGTGGTCCGGGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGGTACGACGCATGGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCCCTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAATCTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTTCGCGTTTCCGACAGCGCAAAGACACAACGTTCTGCCAATTGTAATGGGTGCCCATCCAACGGACTATGCTCGAAGCGCGCCATACCGTTCTTACATCCACGTGGACGAGTTCGAATCGCCGAAAGAGTTGGCCGAGTATCTTCATCGTTTGGATCGAGACGACGAGCTGTATAATTCGTACTTTCGCTGGAAAGGTACCGGCGAATTCATCAACACGTACTTTTGGTGTCGCGTGTGCGCCA]
[+] EMBL BI503295 [ATCGAGGTGCATCTTCGTGGTGCACTACTACTCGTATTTCGCGGTTAAACACGTGGTCCGGGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGGTACGACGCATGGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCCCTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAATCTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTTCGCGTTTCCGACAGCGCAAAGACACAACGTTCTGCCAATTGTAATGGGTGCCCATCCAACGGACTATGCTCGAAGCGCGCCATACCGTTCTTACATCCACGTGGACGAGTTCGAATCGCCGAAAGAGTTGGCCGAGTATCTTCATCGTTTGGATCGAGACGACGAGCTGTATAATTCGTACTTTCGCTGGAAAGGTACCGGCGAATTCATCAACACGTACTTTTGGTGTCGCGTGTGCGCCA]
[+] EMBL BI511376 [ATCGAGGTGCATCTTCGTGGTGCACTACTACTCGTATTTCGCGGTTAAACACGTGGTCCGGGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGGTACGACGCATGGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCCCTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAATCTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAAC ]
consensusID : consensus_924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[CCGGGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGATACGACGCATGGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCCCTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAATCTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTTCGCGTTTCCGACAGCGCAAAGGTATTCAACTTAACTGGCACCACGACCTTATCACGAAACAGTTTAGAATCCTTGGATCCATCAAAGAGACCTTGGTACATGAAAGGAGGGAGCAGAAGGCCTTATCCTGCCATAAAATCTCATCGTACTGGTCGAAGATTGGCGCGTTTGTGGCCCGACGAAGACGCTTATGACGATCGTGTTACCAATCAGTTAATGTACGTGCCCACTG]
[+] EMBL BI508131 [CCGGGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGATACGACGCATGGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCCCTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAATCTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTTCGCGTTTCCGACAGCGCAAAGGTATTCAACTTAACTGGCACCACGACCTTATCACGAAACAGTTTAGAATCCTTGGATCCATCAAAGAGACCTTGGTACATGAAAGGAGGGAGCAGAAGGCCTTATCCTGCCATAAAATCTCATCGTACTGGTCGAAGATTGGCGCGTTTGTGGCCCGACGAAGACGCTTATGACGATCGTGTTACCAATCAGTTAATGTACGTGCCCACTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_924#0 ATCGAGGTGCATCTTCGTGGTGCACTACTACTCGTATTTCGCGGTTAAACACGTGGTCCG 60
consensus_924#1 ---------------------------------------------------------CCG 3
***
consensus_924#0 GGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGGTACGACGCAT 120
consensus_924#1 GGTTCTTCAATGCGTATTTCGAATGTAGCTGAATGGACACGGTGGCAAGATACGACGCAT 63
************************************************* **********
consensus_924#0 GGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCC 180
consensus_924#1 GGATAGATAAAAATTTCTGACAACCAGGAAACGTGCGGCATGGGTCTGCCGCGTCTCTCC 123
************************************************************
consensus_924#0 CTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAAT 240
consensus_924#1 CTGAAGGGATATTTTTTCTACGTGCTATGCTCATCTGGCCTGTTGTTGGTTATATTGAAT 183
************************************************************
consensus_924#0 CTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTT 300
consensus_924#1 CTAGTGCAGGACGAGATATGGCACCGTATGCGACCTCATCCTGGACGAACGCCACCCGTT 243
************************************************************
consensus_924#0 CGCGTTTCCGACAGCGCAAAGACACAACGTTCTGCCAATTGTAATGGGTGCCCATCCAAC 360
consensus_924#1 CGCGTTTCCGACAGCGCAAAGGTATTCAACTTAAC---TGGCACCACGACCTTATC--AC 298
********************* * * * * * * * * *** **
consensus_924#0 GGACTATGCTCGAAGCGCGCCATACCGTTCTTACATCCACGTGGACGAGTTCGAATCGCC 420
consensus_924#1 GAAACAGTTTAGAATCCTTGGATCCATCAAAGAGACCTTGGTACATGAAAGGAGGGAGCA 358
* * * * *** * ** * * * * ** * ** **
consensus_924#0 GAAAGAGTTGGCCGAGTATCTTCATCGTTTGGATCGAGACGACGAGCTGTATAATTCGTA 480
consensus_924#1 GAAGGCCTTATCCTGCCATAAA-ATCTCATCGTACTGGTCGAAGATTGGCGCG-TTTGTG 416
*** * ** ** ** *** * * * * *** ** * ** **
consensus_924#0 CTTTCGCTGGAAAGGTACCGGCGAATTCATCAACACGTACTTTTGGTGTCGCGTGTGCGC 540
consensus_924#1 GCCCGACGAAGACGCTTATGACGATCGTGTTACCAATCAGTT--AATGT-ACGTGCCCAC 473
* * * * * *** * * ** * ** *** **** * *
consensus_924#0 CA 542
consensus_924#1 TG 475
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |