These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_926#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 598 fasta sequence [GAAAAAAATGCCTTACCGTGGTAAATTACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACACGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGAGATTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCCAAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAAAATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCTCGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACTCTTCTTATTTATAAACGATTATCGTTTAAGCAAACATTGGTGCAGTACACTTTGAATATTAGACGATGTGGAATTTAGGGGTGGAATGTAAAAATAATAGTGGCAGAAGNACGTAGCGTAATACCGGAAGTGGAGNNGAATTTTCTGGCGCCAGTTACACGTATGGATAAGTTGGCTTGCGTTGGTTT] [+] EMBL BI503281 [GAAAAAAATGCCTTACCGTGGTAAATTACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACACGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGAGATTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCCAAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAAAATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCTCGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACTCTTCTTATTTATAAACGATTATCGTTTAAGCAAACATTGGTGCAGTACACTTTGAATATTAGACGATGTGGAATTTAGGGGTGGAATGTAAAAATAATAGTGGCAGAAGGACGTAGCGTAATACCGGAAGTGGAGGTGAATTTTCTGGCGCCAGTTACACGTATGGATAAGTTGGCTTGCGTTGGTTT] [+] EMBL BI508408 [GAAAAAAATGCCTTACCGTGGTAAATTACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACACGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGAGATTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCCAAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAAAATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCTCGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACTCTTCTTATTTATAAACGATTATCGTTTAAGCAAACATTGGTGCAGTACACTTTGAATATTAGACGATGTGGAATTTAGGGGTGGAATGTAAAAATAATAGTGGCAGAAGNACGTAGCGTAATACCGGAAGTGGAGNNGAATTTTCTGGCGCCAGTTACACGTATGGATAAGTTGGCTTGCGT ] consensusID : consensus_926#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [ATCTTTTTCATTTGTTGGTAATATTCTCATTTTTTTTCTCTCTCGTAGAAACCATTCACAACGTGCGTTCCTATCAAACCGACATCTTATCAACGAAAAAAATGCCTTACCGTGGTAAATTACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACACGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGAGGTTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCCAAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAAAATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGGGAAGACGAGGTGAACGTGTTGACTATAATAGAGAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCTCGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACTCTTCTTATT] [+] EMBL BI503992 [ATCTTTTTCATTTGTTGGTAATATTCTCATTTTTTTTCTCTCTCGTAGAAACCATTCACAACGTGCGTTCCTATCAAACCGACATCTTATCAACGAAAAAAATGCCTTACCGTGGTAAATTACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACACGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGAGGTTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCCAAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAAAATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGGGAAGACGAGGTGAACGTGTTGACTATAATAGAGAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCTCGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACTCTTCTTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_926#0 ------------------------------------------------------------ consensus_926#1 ATCTTTTTCATTTGTTGGTAATATTCTCATTTTTTTTCTCTCTCGTAGAAACCATTCACA 60 consensus_926#0 ----------------------------------GAAAAAAATGCCTTACCGTGGTAAAT 26 consensus_926#1 ACGTGCGTTCCTATCAAACCGACATCTTATCAACGAAAAAAATGCCTTACCGTGGTAAAT 120 ************************** consensus_926#0 TACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACA 86 consensus_926#1 TACGATTACTTAGTAGAGCTTGCTTCACCTTCAGAAACTCGTGTGCCGAGAAAAGCAACA 180 ************************************************************ consensus_926#0 CGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGA 146 consensus_926#1 CGCATTTTGCTACTAGTATACCCGGCAGGAATTTCTCTACCAATAGAGCGGTCAACATGA 240 ************************************************************ consensus_926#0 GATTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCC 206 consensus_926#1 GGTTTGTACAATTCACTGGTAAAAATGGTGGTCCTCAACATTTAGGAGTGCAACTTGTCC 300 * ********************************************************** consensus_926#0 AAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAA 266 consensus_926#1 AAGGTGGTGATATAATCGCAGTTTCGGCAGTAGATTCGAGAATTCCAAATACATTGAAAA 360 ************************************************************ consensus_926#0 AATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAG----------------- 309 consensus_926#1 AATTTCTCGAGGGTGGTGACGATTTGTTGAAAAAGGCCAAAAGGGAAGACGAGGTGAACG 420 ******************************************* consensus_926#0 -------------------AGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCT 350 consensus_926#1 TGTTGACTATAATAGAGAGAGAGAAAACTCACAAACCGGACGATAGACGTTTAGAAAGCT 480 ***************************************** consensus_926#0 CGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACT 410 consensus_926#1 CGTTCTTTCACGATCGCTAATTGGCCAGCTCAAAAGGACCGATTCCTGCTATCGATTACT 540 ************************************************************ consensus_926#0 CTTCTTATTTATAAACGATTATCGTTTAAGCAAACATTGGTGCAGTACACTTTGAATATT 470 consensus_926#1 CTTCTTATT--------------------------------------------------- 549 ********* consensus_926#0 AGACGATGTGGAATTTAGGGGTGGAATGTAAAAATAATAGTGGCAGAAGNACGTAGCGTA 530 consensus_926#1 ------------------------------------------------------------ consensus_926#0 ATACCGGAAGTGGAGNNGAATTTTCTGGCGCCAGTTACACGTATGGATAAGTTGGCTTGC 590 consensus_926#1 ------------------------------------------------------------ consensus_926#0 GTTGGTTT 598 consensus_926#1 -------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |