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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_929#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 508 fasta sequence
[GCGCACAATACACACGCACACACGCGAACCCCATCGATGTTTTCGCAAGATACTTTTTCTTTGTTTATTTATTGGCAAAATACGATTTATAATACTTGTCACTGGTAAGTTTGCACGATCTTGCTAAATCTATTAGATTGCTGGACGCAATGTTATTATCGCGGTCATTCGCGATCGTATTGACGTTGAATTTTCATTTTTTTTCTTTTTCCCTTGAGAAACGTTGTTGAACAATCTCGAGATATCGTTCTTTTTTTCGTGTGAAAACAGCGCGAACCATAAAAGTCATTGATCGATGAAATACAGAAGAAAAAAAAAAGAGTAAACAAACGCTTTGAAAAATGAAGTTTCATTTCGATCCTTTCTCGTCTTTAACCTAAACTTTAACCATTTGTCGCATTTAATACTATAATACGATGTTTCGTTATCCATCAAAAGAGAATAGTCGCCACTCGTTCTTCTTTTCTTTCATTCTCTCGAAATATAAGATCTAAAAAAATATATATAT]
[+] EMBL BI516974 [GCGCACAATACACACGCACACACGCGAACCCCATCGATGTTTTCGCAAGATACTTTTTCTTTGTTTATTTATTGGCAAAATACGATTTATAATACTTGTCACTGGTAAGTTTGCACGATCTTGCTAAATCTATTAGATTGCTGGACGCAATGTTATTATCGCGGTCATTCGCGATCGTATTGACGTTGAATTTTCATTTTTTTTCTTTTTCCCTTGAGAAACGTTGTTGAACAATCTCGAGATATCGTTCTTTTTTTCGTGTGAAAACAGCGCGAACCATAAAAGTCATTGATCGATGAAATACAGAAGAAAAAAAAAAGAGTAAACAAACGCTTTGAAAAATGAAGTTTCATTTCGATCCTTTCTCGTCTTTAACCTAAACTTTAACCATTTGTCGCATTTAATACTATAATACGATGTT ]
[+] EMBL BI515021 [ CCCATCGATGTTTTCGCAAGATACTTTTTCTTTGTTTATTTATTGGCAAAATACGATTTATAATACTTGTCACTGGTAAGTTTGCACGATCTTGCTAAATCTATTAGATTGCTGGACGCAATGTTATTATCGCGGTCATTCGCGATCGTATTGACGTTGAATTTTCATTTTTTTTCTTTTTCCCTTGAGAAACGTTGTTGAACAATCTCGAGATATCGTTCTTTTTTTCGTGTGAAAACAGCGCGAACCATAAAAGTCATTGATCGATGAAATACAGAAGAAAAAAAA AGTAAACAAACGCTTTGAAAAATGAAGTTTCATTTCGATCCTTTCTCGTCTTTAACCTAAACTTTAACCATTTGTCGCATTTAATACTATAATACGATGTTTCGTTATCCATCAAAAGAGAATAGTCGCCACTCGTTCTTCTTTTCTTTCATTCTCTCGAAATATAAGATCTAAAAAAATATATATAT]
consensusID : consensus_929#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence
[TTTTCTATTATTTTNNNTATAATTAATTTTTGAACACATATTTGTATAGTTTTCAATAGATGATACTTTCAATTGAAATGCACGCACGAGAATAGAAAGAATTGTGATTAGTTGAACGTGCGATAAAACGACGACGATCGTTATGTAACAAGACTCCAATGAATATTATAATTTCTGTGAGTTTCTGTAAGTTAATTTGTGATATTTTTATGCCCCAAGAATTATTTAAAATTCTCACAAACGTGGCACAAGAGTATCGTACGACAGCGCGAAGATTGGCAAACGTCCGAAACTTAAATAAAATCAATATATTACGACGATCATTGTTTCGTTGTCACGATGGTTTGATGATGATGATGATGATGGTCATACATATGCTCTTATATATACATATATATATATATTTTTTTAGATCTTATATTTCGAGAGAATGAAAGAAAAGAAGAACGAGTGGCGACTATTCTCTTTTGATGGATAACG]
[+] EMBL BI516526 [TTTTCTATTATTTTNNNTATAATTAATTTTTGAACACATATTTGTATAGTTTTCAATAGATGATACTTTCAATTGAAATGCACGCACGAGAATAGAAAGAATTGTGATTAGTTGAACGTGCGATAAAACGACGACGATCGTTATGTAACAAGACTCCAATGAATATTATAATTTCTGTGAGTTTCTGTAAGTTAATTTGTGATATTTTTATGCCCCAAGAATTATTTAAAATTCTCACAAACGTGGCACAAGAGTATCGTACGACAGCGCGAAGATTGGCAAACGTCCGAAACTTAAATAAAATCAATATATTACGACGATCATTGTTTCGTTGTCACGATGGTTTGATGATGATGATGATGATGGTCATACATATGCTCTTATATATACATATATATATATATTTTTTTAGATCTTATATTTCGAGAGAATGAAAGAAAAGAAGAACGAGTGGCGACTATTCTCTTTTGATGGATAACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_929#0 GCGCACAATACACACGCACACACGCGAACCCCATCGATGTTTTCGCAAGATACTTTTTCT 60
consensus_929#1 ------------------------------TTTTCTATTATTTTNNNT-ATAATTAATTT 29
** ** *** *** ** * *
consensus_929#0 TTGTTTATTTATTGGCAAAATA--CGATTTATAATACTTGTCACTGGTAAGTTTGCACGA 118
consensus_929#1 TTGAACACATATTTGTATAGTTTTCAATAGATGATACTTTCAATTGAAATGCACGCACGA 89
*** * **** * * * * * ** ** ****** * ** * * ******
consensus_929#0 TCTTGCTAAATCTATTAGATTGCTGGACG--CAATGTTATTATCGCGGTCATTCGCGATC 176
consensus_929#1 GAATAGAAAGAATTGTGATTAGTTGAACGTGCGATAAAACGACGACGATCGTTATGTAAC 149
* ** * * * * ** *** * ** * * ** ** ** * *
consensus_929#0 GTATTGACGTTGAATTTTCATTTTTTTTCTTTTTCCCTTGAGAAACGTTGTTGAACAATC 236
consensus_929#1 AAGACTCCAATGAATATTATAATTTCTGTGAGTTTCTGTAAGTTAATTTGTGATA---TT 206
* ***** ** *** * ** * * ** * **** * *
consensus_929#0 TCGAGATATCGTTCTTTTTTTCGTGTGAAAACAGCGCGAACCATAAAAGTCATTGATCGA 296
consensus_929#1 TTTATGCCCCAAGAATTATTTAAAATTCTCACAA-ACGTGGCACAAGAGT-ATCGTACGA 264
* * * ** *** * *** ** ** ** *** ** * ***
consensus_929#0 TGAAATACAGAAGAAAAAAAAAAGAGTAAACAAACGCTTTGAAAAATGAAGTTTCATTTC 356
consensus_929#1 CAGCGCGAAGATTGGCAAACGTCCGAAACTTAAAT------AAAATCAATATATTACGAC 318
*** *** * *** **** * * * * *
consensus_929#0 GATCCTT-TCTCGTCTTTAACCTAAACTTTAACCATTTGTCGCATTTAATACTATAATAC 415
consensus_929#1 GATCATTGTTTCGTTGTCA--CGATGGTTTGATGATG----ATGATGATGATGGTCATAC 372
**** ** * **** * * * * *** * ** * * * * ****
consensus_929#0 GATGTTTCGTTATCCATCAAAAGAGA-ATAGTCGCCACTCGTTCTTCTTTTCTTTCATTC 474
consensus_929#1 -ATATGCTCTTATATATACATATATATATATATTTTTTTAGATCTTATATTTCGAGAGAA 431
** * **** ** * * * * *** * * **** * ** *
consensus_929#0 TCTCGAAATATAAGATCTAAAAAAATATATATAT--------------- 508
consensus_929#1 TGAAAGAAAAGAAGAACGAGTGGCGACTATTCTCTTTTGATGGATAACG 480
* ** * **** * * ***
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |