These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [TCGTGATTACTCGGAAAAAACATGGATGAGGCCAATGGAAAAATGCGAAGCAAACACGAGGACGTTGATGCTGCGTCCCTCAGTGCCGACATCCTGAACCCCTTCGTGCATCGTCTCGAGCTCGACACAACCTACGACAAGCTCAAGACGGCATTCCTGACTGTGGCTCTCCTACCATTCAGACTAGCTGCAATTACGGCTCTGGTGATCATGGCCTGGCTTTTGGCTTGTCTAGGCCTCCTTGGATTGTCCGAGGAAGATCTTCGACGCGCACCTTTGACGGGGTGGAGACGAGACATGCGAATCGTGATCTGCTGGATGATGCGAGCATTGTTCATCTGCGGTGGATTTCATCACCTGAAGGTCAAAGGTCGTAGAGCAGAATCAAAGGATGCCCCCGTGTTAGCCCTAGCCCCGCATTCAAGCTTCTTCGACGCACTTCCGGTTGTTTACCTCGGCGGACCGAGCATCGTCGCCAAAGCGGAAATCGGGCGCATTCCTTTTTTCGGAAAACTTATAAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCAC] [+] EMBL BI510292 [TCGTGATTACTCGGAAAAAACATGGATGAGGCCAATGGAAAAATGCGAAGCAAACACGAGGACGTTGATGCTGCGTCCCTCAGTGCCGACATCCTGAACCCCTTCGTGCATCGTCTCGAGCTCGACACAACCTACGACAAGCTCAAGACGGCATTCCTGACTGTGGCTCTCCTACCATTCAGACTAGCTGCAATTACGGCTCTGGTGATCATGGCCTGGCTTTTGGCTTGTCTAGGCCTCCTTGGATTGTCCGAGGAAGATCTTCGACGCGCACCTTTGACGGGGTGGAGACGAGACATGCGAATCGTGATCTGCTGGATGATGCGAGCATTGTTCATCTGCGGTGGATTTCATCACCTGAAGGTCAAAGGTCGTAGAGCAGAATCAAAGGATGCCCCCGTGTTAGCCCTAGCCCCGCATTCAAGCTTCTTCGACGCACTTCCGGTTGTTTACCTCGGCGGACCGAGCATCGTCGCCAAAGCGGAAATCGGGCGCATTCCTTTTTTCGGAAAACTTATAAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCAC] consensusID : consensus_931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [TATCAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCACGACAAAATACGATTAAGGAAATTATCGAAAGGGCTACTTCGAAAGAGGATTGGCCACAGGTGATGATTTTTCCCGAAGGTACTTGTACAAATCGATCGTGTCTTATTACTTTCAAATCGGGAGCATTTTATCCCGGTGTTCCTGTTCAGCCTGTTTGTATCAGATATCCTAATAAATTAGACACTGTAACGTGGACCTGGGAAGGTCCTGGAGCATTAAAATTACTGTGGCTTACGTTGACACAATTGAATAGCAGTTGTGAGATAGAGTTCCTCCCCGTTTACAAACCAAGCGAAGCCGAGAAAACAGATCCTAAACTTTATGCAAATAACGTACGACGTCTTATGGCGGAAGCGTTACAAATTCCTGTATCAGATTATACGTATGACGATTGTCGAATTATTAGCAAAGCTCATCAACTACATATACCACGG] [+] EMBL BI511392 [TATCAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCACGACAAAATACGATTAAGGAAATTATCGAAAGGGCTACTTCGAAAGAGGATTGGCCACAGGTGATGATTTTTCCCGAAGGTACTTGTACAAATCGATCGTGTCTTATTACTTTCAAATCGGGAGCATTTTATCCCGGTGTTCCTGTTCAGCCTGTTTGTATCAGATATCCTAATAAATTAGACACTGTAACGTGGACCTGGGAAGGTCCTGGAGCATTAAAATTACTGTGGCTTACGTTGACACAATTGAATAGCAGTTGTGAGATAGAGTTCCTCCCCGTTTACAAACCAAGCGAAGCCGAGAAAACAGATCCTAAACTTTATGCAAATAACGTACGACGTCTTATGGCGGAAGCGTTACAAATTCCTGTATCAGATTATACGTATGACGATTGTCGAATTATTAGCAAAGCTCATCAACTACATATACCACGG] consensusID : consensus_931#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [GACATATGAGTGACGTTGAAAATTAATTTATTGCATGTTTTTTTATTTTTCCGTTTGTTTTATATATATATATATGTATGTATATATATATATATATGTATGTATGTATATACGTATGTATATATGTATGTACGTATGTCGTATGTATGTATGTATACATATATTTTTCTATCCCACGCTCNNNNNACTTATCAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCACGACAAAATACGATTAAGGAAATTATCGAAAGGGCTACTTCGAAAGAGGATTGGCCACAGGTATCATTAACAAAGAAAACATTTTTTGTAAAAATCAAGATAGATAAAATTTTTTTTTATTTTAAT] [+] EMBL BI505594 [GACATATGAGTGACGTTGAAAATTAATTTATTGCATGTTTTTTTATTTTTCCGTTTGTTTTATATATATATATATGTATGTATATATATATATATATGTATGTATGTATATACGTATGTATATATGTATGTACGTATGTCGTATGTATGTATGTATACATATATTTTTCTATCCCACGCTCNNNNNACTTATCAACTATACGCAACCAGTCTATGTTTGGAGAGAAGATCCGAATTCACGACAAAATACGATTAAGGAAATTATCGAAAGGGCTACTTCGAAAGAGGATTGGCCACAGGTATCATTAACAAAGAAAACATTTTTTGTAAAAATCAAGATAGATAAAATTTTTTTTTATTTTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_931#1 -------------------------------------TATCAACTATACGCAACCAGTCT 23 consensus_931#2 ------------------------------------------------------------ consensus_931#0 TCGTGATTACTCGGAAAAAACATGGATGAGGCCAATGGAAAAATGCGAAGCAAACACGAG 60 consensus_931#1 ATGTTTGGAGAGAAGATCCGAATTCACGACAAAATACGATTAAGGAAATTATCGAAAGGG 83 consensus_931#2 ------------------------------------------------------------ consensus_931#0 GACGTTGATGCTGCGTCCCTCAGTGCCGACATCCTGAACCCCTTCGTGCATCGTCTCGAG 120 consensus_931#1 CTACTTCGAAAGAGGATTGGCCACAGGTGATGATTTTTCCCGAAGGTACTTGTACAAATC 143 consensus_931#2 ------------------------GACATATGAGTGACGTTGAAAATTAATTTATTGCAT 36 consensus_931#0 CTCGACACAACCTACGACAAGCTCAAGACGGCATTCCTGACTGTGGCTCTCCTACCATTC 180 * * ** consensus_931#1 -GATCGTGTCTTATTACTTTCAAATCGGGAGCAT-TTTATCCCGGTGTTCCTGTTCA-GC 200 consensus_931#2 -GTTTTTTTATTTTTCCGTTTGTTTTATATATATATATATGTATGTATATATATATATAT 95 consensus_931#0 AGACTAGCTGCAATTACGGCT--CTGGTGATCAT-GGCCTGGCTTTTGGCTTGTCTAGGC 237 * * ** * * ** * * * * * consensus_931#1 CTGTTTGTATCAGATATCCTAATAAATTAGACACTGTAACGTGGACCTGGGAAGGTCCTG 260 consensus_931#2 ATGTATGTAT-GTATATACGTATGTATATATGTATGTACGTATGTCGTATGTATGTATGT 154 consensus_931#0 CTCCTTGGAT--TGTCCGAGGAAGATCTTCGACGCGCACCTTTGACGGGGTGGAGACGAG 295 * ** ** * * * * * * * consensus_931#1 GAGCATTAAAATTACTGTGGCTTACGTTGACACAATTGAATAGCAGTTGTGAGATAGAGT 320 consensus_931#2 ATACAT--ATATTTTTCTATCCCACGCTCNNNNNACTTATCAACTATACGCAACCAGTCT 212 consensus_931#0 ACATGCGAATCGTGATCTGCTGGATGATGCGAGCATTGTTCATCTGCGGTGGATTTCATC 355 * * * * * * * * * * * consensus_931#1 TCCTCCCCGTTTACAAACCAAGCGAAGCCGAGAAAACA-GATCCTAAACTTTATGCAAAT 379 consensus_931#2 ATGTTTGGAGAGAAGATCCGAATTCA--CGACAAAATACGATTAAGGAAATTATCGAAAG 270 consensus_931#0 ACCTGAAGGTCAAAGGTCGTAGAGCAG--AATCAAAGGATGCCCCCGTGTTAGCCCTAGC 413 * * * * * * *** * * consensus_931#1 AACGTACGACGTCTT--ATGGCGGAAGCGTTACAAATTCCTGTATCAGATTATACGTATG 437 consensus_931#2 GGC-TACTTCG------AAAGAGGATTGGCCACAGGTATCATTAACAAAGAAAACATTTT 323 consensus_931#0 CCCGCATTCAAGCTTCTTCGACGCACTTCCGGTTGTTTACCTCGGCGGACCGAGCATCGT 473 * * * * * * * * * * consensus_931#1 ACGATTGTCGAATTATTAGCAAAGCTCATCAACTACATATACCACGG------------- 484 consensus_931#2 TTGTAAAAATCAAGATAGATAAAATTTTTTT-TTATTTTAAT------------------ 364 consensus_931#0 CGCCAAAGCGGAAATCGGGCGCATTCCTTTTTTCGGAAAACTTATAAACTATACGCAACC 533 * * * consensus_931#1 -------------------------------- consensus_931#2 -------------------------------- consensus_931#0 AGTCTATGTTTGGAGAGAAGATCCGAATTCAC 565 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |