These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [GAAAGCAACACATCACATCAAATACCATCAAGTGTGATAACAAAGTGTGCATGATTCGATGGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAACGTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATACGGTGTTTCTTTAACTACTTCTTTTCCACTTTGTTGGAGTACGCAGGAGCCAGAGCCGCACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAATCAGAAAGTAGATCAAGAATTTGCTAAAATGACAGATCAACGAGAACAACAACCTCAACCACAACAGCAGCAACAGGCGCAACAGCAACAACAAACCAAAGGCAATGAAGAACCAAGAACAAATTTGATTATCAATTATCTTCCACAGAGTATGACAGAAAAAGATCTTTACAGTCTTTTTGTAACTATTGGGCCTGTGGAATCTTGTCGT] [+] EMBL BI504734 [GAAAGCAACACATCACATCAAATACCATCAAGTGTGATAACAAAGTGTGCATGATTCGATGGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAACGTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATACGGTGTTTCTTTAACTACTTCTTTTCCACTTTGTTGGAGTACGCAGGAGCCAGAGCCGCACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAATCAGAAAGTAGATCAAGAATTTGCTAAAATGACAGATCAACGAGAACAACAACCTCAACCACAACAGCAGCAACAGGCGCAACAGCAACAACAAACCAAAGGCAATGAAGAACCAAGAACAAATTTGATTATCAATTATCTTCCACAGAGTATGACAGAAAAAGATCTTTACAGTCTTTTTGTAACTATTGGGCCTGTGGAATCTTGTCGT] consensusID : consensus_933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [GTGTGATAACAAAGTGTGCATGATTCGATGGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAACGTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATACGNNGTTTCTTTAACTACTTCTTTTCCACTTTGGTCTGGCATCATATACATATATGTATATATGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAAAAGTGCAGGCAGAGCAACGATCATGGCATTGCACGGGGAAAACGTAGTAATGATTTTGTTTATATTTTTTGTATTTGCTGACCCCATCAACGATTATCCTGGGACATATCAGTTGGAGTACGCAGGAGCCAGNGCCGCACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAATCAGAAAGTAGATCAAGAATTTGCTAAAATGACAGATCA] [+] EMBL BI516964 [GTGTGATAACAAAGTGTGCATGATTCGATGGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAACGTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATACGNNGTTTCTTTAACTACTTCTTTTCCACTTTGGTCTGGCATCATATACATATATGTATATATGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAAAAGTGCAGGCAGAGCAACGATCATGGCATTGCACGGGGAAAACGTAGTAATGATTTTGTTTATATTTTTTGTATTTGCTGACCCCATCAACGATTATCCTGGGACATATCAGTTGGAGTACGCAGGAGCCAGNGCCGCACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAATCAGAAAGTAGATCAAGAATTTGCTAAAATGACAGATCA] consensusID : consensus_933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 172 fasta sequence [GGTGTTGTGTTTCACACACGCTCGAAATGGCTACAAACGAACAAAACGAAGATACGCAAAATAATGTAAATTCTCAAGTCAGGTCTGGCATCATATACATATATGTATATATGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAAAAAAAA] [+] EMBL BI509907 [GGTGTTGTGTTTCACACACGCTCGAAATGGCTACAAACGAACAAAACGAAGATACGCAAAATAATGTAAATTCTCAAGTCAGGTCTGGCATCATATACATATATGTATATATGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_933#1 -------------------------------GTGTGATAACAAAGTGTGCATGATTCGAT 29 consensus_933#2 ------------------------------------------------------------ consensus_933#0 GAAAGCAACACATCACATCAAATACCATCAAGTGTGATAACAAAGTGTGCATGATTCGAT 60 consensus_933#1 GGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAAC 89 consensus_933#2 ------------------------------------------------------------ consensus_933#0 GGTGATGGTGCAACGAGCTTATATAATTATTAGCGTGTATTAAGCAGAATTGCATATAAC 120 consensus_933#1 GTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATAC 149 consensus_933#2 ----------GGTGTTGTGTTTCACAC-ACGCTCGAAATGGCTACAAACGAACAAAA--C 47 consensus_933#0 GTGTGATACAAGTGAGTGAGTGCATACTGCTCTTTTCGTCGATCTTTTCCCACTATATAC 180 *** * ** ** * ** * * * * ** * * * consensus_933#1 GNNGTTTCTTTAACTACTTC---TTTTCCACTTTGGTCTGGCATCATATACATATATGTA 206 consensus_933#2 GAAGATACGCAAAATAATGTAAATTCTCAAGTCAGGTCTGGCATCATATACATATATGTA 107 consensus_933#0 GGTGTTTCTTTAACTACTTC---TTTTCCACTTTGTTGGAGTACGCAGGAGCCAGAGCCG 237 * * * * ** ** * ** ** * * * * * * * * * consensus_933#1 TATA-TGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAA 265 consensus_933#2 TATA-TGCAGATTTATTTTCTATTTATTTTGAACCGCTTAAAGAAAGTGAGAGCATTCAA 166 consensus_933#0 CACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATCAAACTCCAAA---TCAG 294 * * ** * ** * * ** **** ** ** *** * * *** consensus_933#1 AAGTGCAGGCAGAGCAACGATCATGGCATTGCACGGGGAAAACGTAGTAATGATTTTGTT 325 consensus_933#2 AAAAAA------------------------------------------------------ 172 consensus_933#0 AAAGTAGATCAAGAATTTGCTAAAATGACAGATCAACGAGAACAACAACCTCAACCACAA 354 ** consensus_933#1 TATATTTTTTGTATTTGCTGACCCCATCAACGATTATCCTGGGACATATCAGTTGGAGTA 385 consensus_933#2 ------------------------------------------------------------ consensus_933#0 CAGCAGCAACAGGCGCAACAGCAACAACAAACCAAAGGCAATGAAGAACCAAGAACAAAT 414 consensus_933#1 CGCAGGAGCCAGNGCCGCACAACTCACAGTTGGTAGCGTCAAATCAAGAACTGCAGAATC 445 consensus_933#2 ------------------------------------------------------------ consensus_933#0 TTGATTATCAATTATCTTCCACAGAGTATGACAGAAAAAGATCTTTACAGTCTTTTTGTA 474 consensus_933#1 AAACTCCAAATCAGAAAGTAGATCAAGAATTTGCTAAAATGACAGATCA 494 consensus_933#2 ------------------------------------------------- consensus_933#0 ACTATTGGGCCTGTGGAATCTTGTCGT---------------------- 501 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |