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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 532 fasta sequence
[TCATGTGACATAGTGTTATTGTGTTTCCTGTGATTATCCGCAGGTCTGTGAAGAAAATTCGAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGATTCGCACAAGCCACTGCGGGAGTTGCGATGCCAACGTATCACAATGCGGGTGGTGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCACCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAATAGCACGCAACACAACGTTCCTTCCAACTTATCTGCAAGTAACATTCCGTCCCATCCAGTATCACCGACGATGACTACGCATTCGAACGTCACCACTCCTAATATAACCAGTCACATGAATACCGGATCAACGCCGGTAATCCTCACTTCGAATGTCACGAATCCTAGCAATCCTGCTGCGTTATCGGTGAATCCGAGGCACGAGGTCAAACTGAACGCTATGCCATGGTTCCACGGGAAGATATCAAGGGAAAC]
[+] EMBL BI506327 [TCATGTGACATAGTGTTATTGTGTTTCCTGTGATTATCCGCAGGTCTGTGAAGAAAATTCGAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGATTCGCACAAGCCACTGCGGGAGTTGCGATGCCAACGTATCACAATGCGGGTGGTGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCACCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAATAGCACGCAACACAACGTTCCTTCCAACTTATCTGCAAGTAACATTCCGTCCCATCCAGTATCACCGACGATGACTACGCATTCGAACGTCACCACTCCTAATATAACCAGTCACATGAATACCGGATCAACGCCGGTAATCCTCACTTCGAATGTCACGAATCCTAGCAATCCTGCTGCGTTATCGGTGAATCCGAGGCACGAGGTCAAACTGAACGCTATGCCATGGTTCCACGGGAAG ]
[+] EMBL BI508181 [ ATCTGAAGTATAGGATTCGCACAAGCCACTGCGGGAGTTGCGATGCCAACGTATCACAATGCGGGTGGTGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCACCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAATAGCACGCAACACAACGTTCCTTCCAACTTATCTGCAAGTAACTTTCCGTCCCATCCAGTATCACCGACGATGACTACGCATTCGAACGTCACCACTCCTAATATAACCAGTCACATGAATACCGGATCAACGCCGGTAATCCTCACTTCGAATGTCACGAATCCTAGCAATCCTGCTGCGTTATCGGTGAATCCGAGGCACGAGGTCAAACTGAACGCTATGCCATGGTTCCACGGGAAGATATCAAGGGAAAC]
consensusID : consensus_935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[ATCCGCAGGTCTGTGAAGAAAATTCGAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGAAATATACATGTATCTATTCATAGAGCTTGAAAAACATTGAGATCTCAAATGAAATACGTAGTGGATTTTTTGCGGCGTAAAATGTTTCTCTACAAACCAGATACAATCGTAAACGCATTATAATGGTCGTAAATCACTTTAAATAACCTTGAAAGACCTCGAGAAACCAACATATTGATTCGCACAAGCCACTGCGGGAGTTGCGATGCCAACGTATCACAATGCGGGTGGTGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCACCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAATAGCA]
[+] EMBL BI506512 [ATCCGCAGGTCTGTGAAGAAAATTCGAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGAAATATACATGTATCTATTCATAGAGCTTGAAAAACATTGAGATCTCAAATGAAATACGTAGTGGATTTTTTGCGGCGTAAAATGTTTCTCTACAAACCAGATACAATCGTAAACGCATTATAATGGTCGTAAATCACTTTAAATAACCTTGAAAGACCTCGAGAAACCAACATATTGATTCGCACAAGCCACTGCGGGAGTTGCGATGCCAACGTATCACAATGCGGGTGGTGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCACCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAATAGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_935#0 TCATGTGACATAGTGTTATTGTGTTTCCTGTGATTATCCGCAGGTCTGTGAAGAAAATTC 60
consensus_935#1 -----------------------------------ATCCGCAGGTCTGTGAAGAAAATTC 25
*************************
consensus_935#0 GAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGAT 120
consensus_935#1 GAATATTCGATAAGAGGGGAAAATATTCGAAGGATGGACAATCAATCTGAAGTATAGGAA 85
***********************************************************
consensus_935#0 TCGCACAAG---CCACTGCGGGAGTT---GCGATGCCAACGTATCACA--ATGCGGGTGG 172
consensus_935#1 ATATACATGTATCTATTCATAGAGCTTGAAAAACATTGAGATCTCAAATGAAATACGTAG 145
*** * * * * *** * * * * *** * * ** *
consensus_935#0 TGGATACCCGAATGTGTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCAATCAAAATCA 232
consensus_935#1 TGGATTTTTTGCGGCGTAAAATGTTTCTCTACAAACCAGAT------ACAATCGTAAACG 199
***** * ** * * * *** * * ***** ** *
consensus_935#0 CCATACGATCCCCTCAAACGTAACGTCCCATCCCCTTATACAAAAT--AGCACGCAACAC 290
consensus_935#1 CATTATAATGGTCGTAAA--TCACTTTAAATAACCTTGAAAGACCTCGAGAAACCAACAT 257
* ** ** * *** * ** * ** **** * * * ** * *****
consensus_935#0 AACGTTCCTTCCAACTTATCTGCAAGTAACATTCCGTCCCATCCAGTATCACCGACGATG 350
consensus_935#1 ATTGATTCGCACAAGCCA-CTGCGGG--AGTTGCGATGCCAACGTATCACAATGCGGGTG 314
* * * * *** * **** * * * * * *** * * ** * * **
consensus_935#0 ACTACGCATTCGAACGTCACCACTCCTAATATAACCAGTCACA-TGAATACCGGATCAAC 409
consensus_935#1 G-TGGATACCCGAATGT-GTCAGCGCCAGCGCGGCAAGCGAAGCTCGATGGCA-ATCAAA 371
* * **** ** ** * * * ** * * ** * *****
consensus_935#0 GCCGGTA-ATCCTCACTTCGAATGTCACGAATCCTAGCAATCCTGCTGCGTTATCGGTGA 468
consensus_935#1 ATCACCATACGATCCCCTCAAACGTAACG--TCCCATC--CCCTTATACAAAATAGCA-- 425
* * * ** * ** ** ** *** *** * * *** * * ** *
consensus_935#0 ATCCGAGGCACGAGGTCAAACTGAACGCTATGCCATGGTTCCACGGGAAGATATCAAGGG 528
consensus_935#1 ------------------------------------------------------------
consensus_935#0 AAAC 532
consensus_935#1 ----
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |