These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [TGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATACAATGTACATAGGTACACGTACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATATATATATATATATATATATATATAATAATAGTAGATATGTACAACGTGTGTATGTATGTGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGAGAGGGAGTGTGGAGTGTGTCTTCTCACGAGACGCCATTCAGAAATTTCGCATCATACAGTTTGCGCGCGCGCAATCTGTTGGCGAATAGAAGAGAGAGGAGGAGAAGGAGGCTCTGATATCGA] [+] EMBL BI503203 [TGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATACAATGTACATAGGTACACGTACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATATATATATATATATATATATATATAATAATAGTAGATATGTACAACGTGTGTATGTATGTGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGAGAGGGAGTGTGGAGTGTGTCTTCTCACGAGACGCCATTCAGAAATTTCGCATCATACAGTTTGCGCGCGCGCAATCTGTTGGCGAATAGAAGAGAGAGGAGGAGAAGGAGGCTCTGATATCGA] consensusID : consensus_953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 406 fasta sequence [CTATCTAGTCGAGAATTCAAAATCGAAGCTAAAACTCTCTCTCTCTCTGTCTTTCTTTCCATCGGGCCGATAGAACCGTAACACACTGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATACAATGTACATAGGTACACATACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATAATAATAGATATGTACAACGTGTGTATGTATATGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGAGA] [+] EMBL BI514970 [CTATCTAGTCGAGAATTCAAAATCGAAGCTAAAACTCTCTCTCTCTCTGTCTTTCTTTCCATCGGGCCGATAGAACCGTAACACACTGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATACAATGTACATAGGTACACATACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATAATAATAGATATGTACAACGTGTGTATGTATATGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGAGA] [+] EMBL BI514858 [CTATCTAGTCGAGAATTCAAAATCGAAGCTAAAACTCTCTCTCTCTCTGTCTTTCTTTCCATCGGGCCGATAGAACCGTAACACACTGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATACAATGTACATAGGTACACATACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATAATAATAGATATGTACAACGTGTGTATGTATATGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_953#0 ------------------------------------------------------------ consensus_953#1 CTATCTAGTCGAGAATTCAAAATCGAAGCTAAAACTCTCTCTCTCTCTGTCTTTCTTTCC 60 consensus_953#0 --------------------------TGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAA 34 consensus_953#1 ATCGGGCCGATAGAACCGTAACACACTGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAA 120 ********************************** consensus_953#0 TATGTATAAGTAATATATATATATACAATGTACATAGGTACACGTACGCCGATACAAGCT 94 consensus_953#1 TATGTATAAGTAATATATATATATACAATGTACATAGGTACACATACGCCGATACAAGCT 180 ******************************************* **************** consensus_953#0 TGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATAT 154 consensus_953#1 TGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATAT 240 ************************************************************ consensus_953#0 ATATATATATATATATATATATATATATATATAATAATAGTAGATATGTACAACGTGTGT 214 consensus_953#1 ATATATATA---------------------------ATAATAGATATGTACAACGTGTGT 273 ********* *** ******************** consensus_953#0 ATGTATGTGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGG 274 consensus_953#1 ATGTATATGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGG 333 ****** ***************************************************** consensus_953#0 TGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAA 334 consensus_953#1 TGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAA 393 ************************************************************ consensus_953#0 GTAAAGTGGGAGAGGGAGTGTGGAGTGTGTCTTCTCACGAGACGCCATTCAGAAATTTCG 394 consensus_953#1 GTAAAGTGGGAGA----------------------------------------------- 406 ************* consensus_953#0 CATCATACAGTTTGCGCGCGCGCAATCTGTTGGCGAATAGAAGAGAGAGGAGGAGAAGGA 454 consensus_953#1 ------------------------------------------------------------ consensus_953#0 GGCTCTGATATCGA 468 consensus_953#1 -------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |