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Apis mellifera
cluster # 953 cluster # 953       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_953#0 length = 468 sequences # 1  
consensus_953#1 length = 406 sequences # 2  

consensusID : consensus_953#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 468
fasta sequence
                              [TGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATACAATGTACATAGGTACACGTACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATATATATATATATATATATATATATAATAATAGTAGATATGTACAACGTGTGTATGTATGTGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGAGAGGGAGTGTGGAGTGTGTCTTCTCACGAGACGCCATTCAGAAATTTCGCATCATACAGTTTGCGCGCGCGCAATCTGTTGGCGAATAGAAGAGAGAGGAGGAGAAGGAGGCTCTGATATCGA]

[+] EMBL BI503203             [TGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATACAATGTACATAGGTACACGTACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATATATATATATATATATATATATATAATAATAGTAGATATGTACAACGTGTGTATGTATGTGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGAGAGGGAGTGTGGAGTGTGTCTTCTCACGAGACGCCATTCAGAAATTTCGCATCATACAGTTTGCGCGCGCGCAATCTGTTGGCGAATAGAAGAGAGAGGAGGAGAAGGAGGCTCTGATATCGA]


>consensus_953#0 TGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATAC AATGTACATAGGTACACGTACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACA TATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATATATATATATATATATAT ATATATAATAATAGTAGATATGTACAACGTGTGTATGTATGTGTGTGTGTGTGTATGGAT CTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCAT GTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGAGAGGGAGTGTGGAGT GTGTCTTCTCACGAGACGCCATTCAGAAATTTCGCATCATACAGTTTGCGCGCGCGCAAT CTGTTGGCGAATAGAAGAGAGAGGAGGAGAAGGAGGCTCTGATATCGA



consensusID : consensus_953#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 406
fasta sequence
                              [CTATCTAGTCGAGAATTCAAAATCGAAGCTAAAACTCTCTCTCTCTCTGTCTTTCTTTCCATCGGGCCGATAGAACCGTAACACACTGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATACAATGTACATAGGTACACATACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATAATAATAGATATGTACAACGTGTGTATGTATATGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGAGA]

[+] EMBL BI514970             [CTATCTAGTCGAGAATTCAAAATCGAAGCTAAAACTCTCTCTCTCTCTGTCTTTCTTTCCATCGGGCCGATAGAACCGTAACACACTGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATACAATGTACATAGGTACACATACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATAATAATAGATATGTACAACGTGTGTATGTATATGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGAGA]
[+] EMBL BI514858             [CTATCTAGTCGAGAATTCAAAATCGAAGCTAAAACTCTCTCTCTCTCTGTCTTTCTTTCCATCGGGCCGATAGAACCGTAACACACTGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAATATGTATAAGTAATATATATATATACAATGTACATAGGTACACATACGCCGATACAAGCTTGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATATATATATATAATAATAGATATGTACAACGTGTGTATGTATATGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGA  ]


>consensus_953#1 CTATCTAGTCGAGAATTCAAAATCGAAGCTAAAACTCTCTCTCTCTCTGTCTTTCTTTCC ATCGGGCCGATAGAACCGTAACACACTGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAA TATGTATAAGTAATATATATATATACAATGTACATAGGTACACATACGCCGATACAAGCT TGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATAT ATATATATAATAATAGATATGTACAACGTGTGTATGTATATGTGTGTGTGTGTATGGATC TCTAAATCGCCATTAAAATACGATTTTTCCCGGTGATCCCGGCGCAAAGGAGATGGCATG TTTATACTTTATCGCTCGGTGAAAAGTCGTCAAGTAAAGTGGGAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_953#0      ------------------------------------------------------------
consensus_953#1      CTATCTAGTCGAGAATTCAAAATCGAAGCTAAAACTCTCTCTCTCTCTGTCTTTCTTTCC 60
                                                                                 

consensus_953#0      --------------------------TGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAA 34
consensus_953#1      ATCGGGCCGATAGAACCGTAACACACTGTCTCTGTGTTCCACCGTTCCTTCCTCCGTTAA 120
                                               **********************************

consensus_953#0      TATGTATAAGTAATATATATATATACAATGTACATAGGTACACGTACGCCGATACAAGCT 94
consensus_953#1      TATGTATAAGTAATATATATATATACAATGTACATAGGTACACATACGCCGATACAAGCT 180
                     ******************************************* ****************

consensus_953#0      TGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATAT 154
consensus_953#1      TGCAACAGCTTGCAGCACTATTTACATATTGCGTTTCCTTTCTTCCGTATATATATATAT 240
                     ************************************************************

consensus_953#0      ATATATATATATATATATATATATATATATATAATAATAGTAGATATGTACAACGTGTGT 214
consensus_953#1      ATATATATA---------------------------ATAATAGATATGTACAACGTGTGT 273
                     *********                           *** ********************

consensus_953#0      ATGTATGTGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGG 274
consensus_953#1      ATGTATATGTGTGTGTGTGTATGGATCTCTAAATCGCCATTAAAATACGATTTTTCCCGG 333
                     ****** *****************************************************

consensus_953#0      TGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAA 334
consensus_953#1      TGATCCCGGCGCAAAGGAGATGGCATGTTTATACTTTATCGCTCGGTGAAAAGTCGTCAA 393
                     ************************************************************

consensus_953#0      GTAAAGTGGGAGAGGGAGTGTGGAGTGTGTCTTCTCACGAGACGCCATTCAGAAATTTCG 394
consensus_953#1      GTAAAGTGGGAGA----------------------------------------------- 406
                     *************                                               

consensus_953#0      CATCATACAGTTTGCGCGCGCGCAATCTGTTGGCGAATAGAAGAGAGAGGAGGAGAAGGA 454
consensus_953#1      ------------------------------------------------------------
                                                                                 

consensus_953#0      GGCTCTGATATCGA 468
consensus_953#1      --------------
                                   




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)