cluster # 956

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Apis mellifera
cluster # 956 cluster # 956 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_956#0 length = 449 sequences # 2

consensus_956#1 length = 342 sequences # 1

consensusID : consensus_956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 449
fasta sequence

                              [ATACAATAAATGGTGGAAAATATAGCAATTTAAATATACCAGTAACATCACAACAAGGATTAGCGCCACTTAGTCCCTATTTAAATTTTGATCCTGCATATCTTCCTCCAAGCCAACCAGAATATATATTTCCGGAAGGAGCAGCAAAACAAAGAGGAAGATTTGAATTGGCTTTTAGTCAGATTGGTGCAGCATGTATTATAGGAGCTGGTATTGGAGGTGCTACTGGTTTGTATAGAGGCATTAAAGCAACATCTTTAGCTGACCAAACTGGGAAACTTAGAAGAACACAATTAATCAATCATGTTATGAAAAGTGGATCGTCGTTAGCAAATACATTTGGAATAGTATCTGTGATGTATAGTGGATTTGGTGTGCTTTTATCTTGGGTCAGAGGTACAGATGATTCCTTAAATACATTAGCAGCAGCAACTGGAACAGGAATGTTG]

[+] EMBL BI507629             [ATACAATAAATGGTGGAAAATATAGCAATTTAAATATACCAGTAACATCACAACAAGGATTAGCGCCACTTAGTCCCTATTTAAATTTTGATCCTGCATATCTTCCTCCAAGCTAACCAGAATATATATTTCCGGAAGGAGCAGCAAAACAAAGAGGAAGATTTGAATTGGCTTTTAGTCAGATTGGTGCAGCATGTATTATAGGAGCTGGTATTGGAGGTGCTACTGGTTTGTATAG                                                                                                                                                                                                                   ]
[+] EMBL BI503195             [  ACAATAAATGGTGGAAAATATAGCAATTTAAATATACCAGTAACATCACAACAAGGATTAGCGCCACTTAGTCCCTATTTAAATTTTGATCCTGCATATCTTCCTCCAAGCCAACCAGAATATATATTTCCGGAAGGAGCAGCAAAACAAAGAGGAAGATTTGAATTGGCTTTTAGTCAGATTGGTGCAGCATGTATTATAGGAGCTGGTATTGGAGGTGCTACTGGTTTGTATAGAGGCATTAAAGCAACATCTTTAGCTGACCAAACTGGGAAACTTAGAAGAACACAATTAATCAATCATGTTATGAAAAGTGGATCGTCGTTAGCAAATACATTTGGAATAGTATCTGTGATGTATAGTGGATTTGGTGTGCTTTTATCTTGGGTCAGAGGTACAGATGATTCCTTAAATACATTAGCAGCAGCAACTGGAACAGGAATGTTG]




>consensus_956#0
ATACAATAAATGGTGGAAAATATAGCAATTTAAATATACCAGTAACATCACAACAAGGAT
TAGCGCCACTTAGTCCCTATTTAAATTTTGATCCTGCATATCTTCCTCCAAGCCAACCAG
AATATATATTTCCGGAAGGAGCAGCAAAACAAAGAGGAAGATTTGAATTGGCTTTTAGTC
AGATTGGTGCAGCATGTATTATAGGAGCTGGTATTGGAGGTGCTACTGGTTTGTATAGAG
GCATTAAAGCAACATCTTTAGCTGACCAAACTGGGAAACTTAGAAGAACACAATTAATCA
ATCATGTTATGAAAAGTGGATCGTCGTTAGCAAATACATTTGGAATAGTATCTGTGATGT
ATAGTGGATTTGGTGTGCTTTTATCTTGGGTCAGAGGTACAGATGATTCCTTAAATACAT
TAGCAGCAGCAACTGGAACAGGAATGTTG

consensusID : consensus_956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [TGTAAAAATAATCATTCATATATAATTTATATCAATTACAGAATGCAAACCCTTCTATCATTCCTTTGTTAGTACTACTAAGAAATTTAAATCACTATAAGAAAAATATTTAGGAATATTCAGAGTTTTTGCTGTTACACACAGTCTTACGCTGGATTTATATTGCGATGCCTCAATTCCAGTAAGGCTTCTCGATTAGTCCATAAGCAATATACAGATGCTATTCCTAGTCCTATACAACCACCCAATGCACATTTTTTTAAGCCAGTTGTAGATTTGAACAACATTCCTGTTCCAGTTGCTGCTGCTAATGTATTTAAGGAATCATCTGTACCTCTGACC]

[+] EMBL BI507265             [TGTAAAAATAATCATTCATATATAATTTATATCAATTACAGAATGCAAACCCTTCTATCATTCCTTTGTTAGTACTACTAAGAAATTTAAATCACTATAAGAAAAATATTTAGGAATATTCAGAGTTTTTGCTGTTACACACAGTCTTACGCTGGATTTATATTGCGATGCCTCAATTCCAGTAAGGCTTCTCGATTAGTCCATAAGCAATATACAGATGCTATTCCTAGTCCTATACAACCACCCAATGCACATTTTTTTAAGCCAGTTGTAGATTTGAACAACATTCCTGTTCCAGTTGCTGCTGCTAATGTATTTAAGGAATCATCTGTACCTCTGACC]




>consensus_956#1
TGTAAAAATAATCATTCATATATAATTTATATCAATTACAGAATGCAAACCCTTCTATCA
TTCCTTTGTTAGTACTACTAAGAAATTTAAATCACTATAAGAAAAATATTTAGGAATATT
CAGAGTTTTTGCTGTTACACACAGTCTTACGCTGGATTTATATTGCGATGCCTCAATTCC
AGTAAGGCTTCTCGATTAGTCCATAAGCAATATACAGATGCTATTCCTAGTCCTATACAA
CCACCCAATGCACATTTTTTTAAGCCAGTTGTAGATTTGAACAACATTCCTGTTCCAGTT
GCTGCTGCTAATGTATTTAAGGAATCATCTGTACCTCTGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_956#0      ATACAATAAATGGTGGAAAATATAGCAATTTAAATATACCAGTAACATCACAACAAGGAT 60
consensus_956#1      ----------------------------------TGTAAAAATAATCATTCATATATAAT 26
                                                       * **  * ***     **   *  **

consensus_956#0      TAGCGCCACTTAGTCCCTATTTAAATTTTGATCCTGCATATCTTCCTCCAAGCCAACCAG 120
consensus_956#1      TTATATCAATTA--CAGAATGCAAACCCT--TCTATCATTCCTTTGTTAGTACTACTAAG 82
                     *     ** ***  *   **  ***   *  **   ***  ***  *     * *   **

consensus_956#0      AA-TATATATTTCCGGAAGGAGCAGCAAAACAAAGAGGAAGATTTGAATTGGCTTTTAGT 179
consensus_956#1      AAATTTAAATCACTATAAGAA------AAATATTTAGGAATATTCAGA---GTTTTTG-- 131
                     ** * ** **  *   *** *      *** *   ***** ***   *   * ****   

consensus_956#0      CAGATTGGTGCAGCATGTATTATAG-GAGCTGGTATTGGAGGTGCTACTGGTTTGTATAG 238
consensus_956#1      ----CTGTTACACACAGTCTTACGCTGGATTTATATTGC-GATGC--CTCAATTCCAGTA 184
                          ** * **    ** ***    *   *  *****  * ***  **   **  *   

consensus_956#0      AGGCATTAAAGCAACATCTTTAGCTGACCA-AACTGGGAAACTTAGAAGAACACAATTAA 297
consensus_956#1      AGGCTTCTCGATTAGTCCATAAGCAATATACAGATGCTATTCCTAGTCCTATACAACCAC 244
                     **** *       *   * * ***     * *  **  *  * ***    * ****  * 

consensus_956#0      TCAAT-CATGTTATGAAAAGTGGATCGTCGTTAGCAAATACATTTGGAATAGTATCTGTG 356
consensus_956#1      CCAATGCACATTTTTTTAAGCCAGTTGTAGATTTGAACAACATTCCTGTTCCAGTTGCTG 304
                      **** **  ** *   ***    * ** * *   **  *****     *    *   **

consensus_956#0      ATGTATAGTGGATTTGGTG---TGCTTTTATCTTGGGTCAGAGGTACAGATGATTCCTTA 413
consensus_956#1      CTGC-TAATGTATTTAAGGAATCATCTGTACCTCTGACC--------------------- 342
                      **  ** ** ****   *       * ** **  *  *                     

consensus_956#0      AATACATTAGCAGCAGCAACTGGAACAGGAATGTTG 449
consensus_956#1      ------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)