These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence [TATGGAGTCGAAAAGTCAAAGGAATATTTCGGATTTAGCAAAAATCGAGGAGGTTGTTGATCATCCAATCGAGTTGTTTAGGATTTGGCAGGATGAAGCACGAAAATACAATTCGAAAGCGCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGTTGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAAGATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAATGAGCAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGAGAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCATATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAATATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTTGTAAGTTTATCCACAAACATTTAATCTGATAATGAATATTCCATATTTAAATGTTGTTTCAGCGTTGGATACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGATCGTATACTATATCATGAAGATACAT] [+] EMBL BI512354 [TATGGAGTCGAAAAGTCAAAGGAATATTTCGGATTTAGCAAAAATCGAGGAGGTTGTTGATCATCCAATCGAGTTGTTTAGGATTTGGCAGGATGAAGCACGAAAATACAATTCGAAAGCGCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGTTGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAAGATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAATGAGCAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGAGAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCATATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAATATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGA ] [+] EMBL BI506323 [ GGTTGTTGATCATCCAATCGAGTTGTTTAGGATTTGGCAGGATGAAGCACGAAAATACAATTCGAAAGCGCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGTTGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAAGATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAATGAGCAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGAGAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCATATATGCAAACAAGGTCATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAATATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTTGTAAGTTTATCCACAAACATTTAATCTGATAATGAATATTCCATATTTAAATGTTGTTTCAGCGTTGGATACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGATCGTATACTATATCATGAAGATACAT] consensusID : consensus_971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence [TCGAGGAAGTTGTTGATCATCCAATCGAGTTGTTTAGGATTTGGCACGATGAAGCACGAAAATACAATTCGAAAGCGCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGTTGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAAGATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAATGAACAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGAGAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCATATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAATATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTTCGTTGGATACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGATCGTATACTATATCATGAAGATACAT] [+] EMBL BI507993 [TCGAGGAAGTTGTTGATCATCCAATCGAGTTGTTTAGGATTTGGCACGATGAAGCACGAAAATACAATTCGAAAGCGCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGTTGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAAGATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAATGAACAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGAGAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCATATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAATATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTTCGTTGGATACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGATCGTATACTATATCATGAAGATACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_971#0 TATGGAGTCGAAAAGTCAAAGGAATATTTCGGATTTAGCAAAAATCGAGGAGGTTGTTGA 60 consensus_971#1 --------------------------------------------TCGAGGAAGTTGTTGA 16 ******* ******** consensus_971#0 TCATCCAATCGAGTTGTTTAGGATTTGGCAGGATGAAGCACGAAAATACAATTCGAAAGC 120 consensus_971#1 TCATCCAATCGAGTTGTTTAGGATTTGGCACGATGAAGCACGAAAATACAATTCGAAAGC 76 ****************************** ***************************** consensus_971#0 GCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGT 180 consensus_971#1 GCTAGACATCTGTTGCTTGGCTACAACTTCAAAAGATTGTAAAGTATCTGCAAGGAACGT 136 ************************************************************ consensus_971#0 TGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAA 240 consensus_971#1 TGTTCTTCGAGAATTTGATAATGATGGTTTTGTAATTGTAACGGATAATAGGAGTAAAAA 196 ************************************************************ consensus_971#0 GATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAA 300 consensus_971#1 GATTGATAATTTAGAAAATATTCCATATGCTGCAATGTGTTACTTTTGGTCTTATGTAAA 256 ************************************************************ consensus_971#0 TGAGCAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGA 360 consensus_971#1 TGAACAGAACCAAAAGATCCACAAACAGATAAGAATAGAAGGCATTATGAAAAAATTGGA 316 *** ******************************************************** consensus_971#0 GAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCA 420 consensus_971#1 GAAGGAAAATTTCAAGCATTTATATGACAGAGAGCCATTGTTTTGCAAAATTCGTTCTCA 376 ************************************************************ consensus_971#0 TATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAAT 480 consensus_971#1 TATATGCAAACAAGGACATAACGTTGATTGGGATGAATTAAAACAGCGACATGACAAAAT 436 ************************************************************ consensus_971#0 ATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTTGTAAGTTTA 540 consensus_971#1 ATTTGATTCAGTTCGTAAAGGAGAAAATGATTTACCGATGCCGGATCATTT--------- 487 *************************************************** consensus_971#0 TCCACAAACATTTAATCTGATAATGAATATTCCATATTTAAATGTTGTTTCAGCGTTGGA 600 consensus_971#1 -----------------------------------------------------CGTTGGA 494 ******* consensus_971#0 TACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGAT 660 consensus_971#1 TACAAACTTTTTCCGACAATGATGGAATTTTATTTTGCAAGAGATTATTTTATAGCTGAT 554 ************************************************************ consensus_971#0 CGTATACTATATCATGAAGATACAT 685 consensus_971#1 CGTATACTATATCATGAAGATACAT 579 ************************* |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |