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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence
[AGGGCTATGTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACATCACGAGTTTGGCAGTAAAAAGATCTCATAGAAGGCTTGGTATTGCTCAGAAACTTATGAATCAGGCTTCTAGAGCAATGGTTGAATGTTTTGGAGCAAAATATGTTTCTCTACATGTTCGTAGAAGTAATCGGGCAGCTTTGAATTTATATACAAGCAGTTTGCAATTTGAAGTATCAGAAGTCGAACCAAAATATTATGCAGATGGAGAAGATGCTTATGCAATGAAACGCGATCTTAGCAGCTTTTACATGGAAAAAAATGCAAAAGAAAAAACAAACAAAGATGGTAATACACACATACATACTGGCAGATGCTGTGATCGTTCATAGTCAGATTGGGATGTTCATCTATAATTATTAGGTTGTTGATGATTTTTTGCATCATTAATTCCATACTGAATTTAATCATATAATATGTATTTTTCATAAATGAATTTTCACGGAAAAT]
[+] EMBL BI503144 [AGGGCTATGTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACATCACGAGTTTGGCAGTAAAAAGATCTCATAGAAGGCTTGGTATTGCTCAGAAACTTATGAATCAGGCTTCTAGAGCAATGGTTGAATGTTTTGGAGCAAAATATGTTTCTCTACATGTTCGTAGAAGTAATCGGGCAGCTTTGAATTTATATACAAGCAGTTTGCAATTTGAAGTATCAGAAGTCGAACCAAAATATTATGCAGATGGAGAAGATGCTTATGCAATGAAACGCGATCTTAGCAGCTTTTACATGGAAAAAAATGCAAAAGAAAAAACAAACAAAGATGGTAATACACACATACATACTGGCAGATGCTGTGATCGTTCATAGTCAGATTGGGATGTTCATCTATAATTATTAGGTTGTTGATGATTTTTTGCATCATTAATTCCATACTGAATTTAATCATATAATATGTATTTTTCATAAATGAATTTTCACGGAAAAT]
consensusID : consensus_974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence
[GTATGAGTGAATCTTCACCTGTAAATGACTTAAAGAATGGTAGATCTCGTATGAAAAAAATTCGCAAAGATTAAAGATTAAAATCAGATTTATAAATTTGAAAAAAAAAAGTGATTAGTAATAAGAAAAAAAATATATCAAAAAAAAGAGAATTGACCAAAATTGTCTTTCATTTATATATCCATAACATTATAAGTAATCAAAATGTCTATAAATATACGCTGTGCTACAACAGATGATTTGTTGAATATACAGCATTGTAATTTGCAATGTCTACCAGAAAATTATCAAATGAAATATTATTTGTATCATGCTCTTTCTTGGCCACAATTAAGTTACGTAGCAGNGGATGAAAAAGGCAGAATAGTGGGCTATGTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACATCACGAGTTTGGCAGTAAAAAGATCTCATAG]
[+] EMBL BI516286 [GTATGAGTGAATCTTCACCTGTAAATGACTTAAAGAATGGTAGATCTCGTATGAAAAAAATTCGCAAAGATTAAAGATTAAAATCAGATTTATAAATTTGAAAAAAAAAAGTGATTAGTAATAAGAAAAAAAATATATCAAAAAAAAGAGAATTGACCAAAATTGTCTTTCATTTATATATCCATAACATTATAAGTAATCAAAATGTCTATAAATATACGCTGTGCTACAACAGATGATTTGTTGAATATACAGCATTGTAATTTGCAATGTCTACCAGAAAATTATCAAATGAAATATTATTTGTATCATGCTCTTTCTTGGCCACAATTAAGTTACGTAGCAGNGGATGAAAAAGGCAGAATAGTGGGCTATGTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACATCACGAGTTTGGCAGTAAAAAGATCTCATAG]
consensusID : consensus_974#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence
[GAGGTTATGACACTATTCCCGTGTGTGTCATTTTAGGAAGTTCGTTAGTATATTGATAATCGAGGTACGGAATTAATAATGCAGGAAATCGTCCTAGCAGCCTTCTCCGTGATATCGAGTCTACTCATAGTATTTGGCCTGGTGCTGCTGGGTAAGAACGACAGATAGTAACGTTCCGTTATTGCTGCGCGGTATGCAGAGTGTTTCGAAACATTGTTATCCGACCTGTCGAATAGTCATATAGTTCCGAAGTTGAAGGTTGGTATTTAGTTTGGAAGTTTTTCCTTTCAAGATTCAGGTTTGTTCGAGAACTGTTGGGTGGTATGAGTGAATCTTCACCTGNAAATGACTTAAAGAATGGTAGATCTCGTATGAAAAAAATTCGCAAAGATTA]
[+] EMBL BI511912 [GAGGTTATGACACTATTCCCGTGTGTGTCATTTTAGGAAGTTCGTTAGTATATTGATAATCGAGGTACGGAATTAATAATGCAGGAAATCGTCCTAGCAGCCTTCTCCGTGATATCGAGTCTACTCATAGTATTTGGCCTGGTGCTGCTGGGTAAGAACGACAGATAGTAACGTTCCGTTATTGCTGCGCGGTATGCAGAGTGTTTCGAAACATTGTTATCCGACCTGTCGAATAGTCATATAGTTCCGAAGTTGAAGGTTGGTATTTAGTTTGGAAGTTTTTCCTTTCAAGATTCAGGTTTGTTCGAGAACTGTTGGGTGGTATGAGTGAATCTTCACCTGNAAATGACTTAAAGAATGGTAGATCTCGTATGAAAAAAATTCGCAAAGATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_974#0 AGGGCTATGTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACATCA 60
consensus_974#1 ------------------GTATGAGTGAATCTT-CACCTGTAAATGACTTAAAGA-ATGG 40
consensus_974#2 ------------------------------------------------------------
consensus_974#0 CGAGTTTGGCAGTAAAAAGATCTCATAGAAGGCTTGGTATTGCTCAGAAACTTATGAATC 120
consensus_974#1 TAGATCTCGTA-TGAAAAAAATTCGCA-AAGATTAAAGATTAAAATCAGATTTATAAATT 98
consensus_974#2 -----------------------------------GAGGTTATGACACTATTCCCGTGTG 25
** * * *
consensus_974#0 AGGCTTCTAGAGCAATGGTTGAATGTTTTGGAGCAAAATATGTTTCTCTACATGTTCGTA 180
consensus_974#1 TGAAAA--AAAAAAGTGATT-AGTAATAAGAAAAAAAATATATCAAAAAAAAG------A 149
consensus_974#2 TGTCATTTTAGGAAGTTCGTTAGTATATTGATAATCGAGGTACGGAATTAATAATGCAGG 85
* * * * * * * * * *
consensus_974#0 GAAGTAATCGGG-CAGCTTTGAATTTATATACAAGCAGTTTGCAATTTGAAGTATCAGAA 239
consensus_974#1 GAATTGACCAAAATTGTCTTTCATTTATATATCCATAA----CATTATAAGTAATCAAAA 205
consensus_974#2 AAATCGTCCTAG-CAGCCTTCTCCGTG-ATATCGAGTC----TACTCATAGTATTTGG-- 137
** * * ** * *** * * * *
consensus_974#0 GTCGAACCAAAATATTATGCAGATGGAGAAGATG-CT-TATGCAATGAAACGCGATCTTA 297
consensus_974#1 TGTCTATAAATATACGCTGT-GCTACAACAGATGATT-TGTTGAATATACAGCATTGTAA 263
consensus_974#2 ----CCTGGTGCTGCTGGGTAAGAACGACAGATAGTAACGTTCCGT-TATTGCTGCGCGG 192
* * **** * * * **
consensus_974#0 GCAGCTTTTACATGGAAAAAAATGCAAAAGAAAAAACA-AACAAAGATGGTAATACACAC 356
consensus_974#1 TTTGCAATGTCTACCAGAAAATTATCAAATGAAATATT-ATTTGT-ATCATGCT-CTTTC 320
consensus_974#2 TATGCAGAGTGTTTCGAAACATTGTTATCCGACCTGTCGAATAGTCATATAGTTCCGAAG 252
** ** * * * * * ** * *
consensus_974#0 ATACATACTGGCAGATGCTGTGATCGTTCATAGTCAGATTGGGATGTTCATCTATAATTA 416
consensus_974#1 TTGGCCACAATTAAGTTACGTAGCAGNGGATGAAAAAGGCAGAATAGTGGGCTAT----- 375
consensus_974#2 TTGAAGGTTGGTATTTAGTTTGGAAGTTTTTCCTT---TCAAGATTCAGGTTTGT--TCG 307
* * * * * * ** * *
consensus_974#0 TTAGGTTGTTGATGATTTTTTGCATCATTAATTCCATACTGAATTTAATCATATAATATG 476
consensus_974#1 ----GTTCTTGCTAAAATGGAAGAAGATTGTGAGGATAATCCACATGGACACAT--CACG 429
consensus_974#2 AGAACTGTTGGGTGGTATGAGTGAATCTTCACCTGNAAATG-ACTTAAAGA-ATGGTA-G 364
* * * * * * ** * * * * * ** * *
consensus_974#0 TATTTTTCATAAATGAATTTTCACGGAAAAT 507
consensus_974#1 AGTTTGGCAGTAAAAAGATCTCATAG----- 455
consensus_974#2 ATCTCGTATGAAAAAAATTCGCAAAGATTA- 394
* ** * * ** *
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |