These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence [TTAACGTGCAAACAAGTGTTAAACATCATGGTGATCTTTGGTTTCATGTTAAATTATATGTTACGTGTAAACATGACGATTGCCATAGTATCAATGGTGATTCCAAGCAAGGACAGTTCACACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTTTCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCCTATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTTAATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGACTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCTGTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGAACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGATGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGGTAAATAAATGTATGGATTATAAAATAAAATGGAAGGAAACATTTAGATAAATTTTTTTTTTAATATTCGTAATTTTCAATAAAAAAAA] [+] EMBL BI510010 [TTAACGTGCAAACAAGTGTTAAACATCATGGTGATCTTTGGTTTCATGTTAAATTATATGTTACGTGTAAACATGACGATTGCCATAGTATCAATGGTGATTCCAAGCAAGGACAGTTCACACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTTTCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCCTATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTTAATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGACTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCTGTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGAACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGATGGATACCACCAACGGAACGCAGCAAATTTGTCTC AATATGATGGGTAAATAAATGTATGGATTATAAAATAAAATGGAAGGAAACATTTA ] [+] EMBL BI506380 [ aGGTGGACGACTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCTGTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGAACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGATGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGGTAAATAAATGTATGGATTATAAAATAAAATGGAAGGAAACATTTAGATAAATTTTTTTTTTAATATTCGTAATTTTCAATAAAAAAAA] consensusID : consensus_977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [TTCCAAGCAAGGACAGTTCACACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTTNCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCCTATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTTAATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGACTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCTGTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGAACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGATGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGCTTCATCGCTTGGAGCAGCATTAACAATGCCAATTTGCGGATTTTTAATTGCTTACTTTGGATGGGAATCTGTATTCTACGTAACAGGAACAATAGGTCTCATGTGGAGTATAGCTTGGTTTCTCTTAATATTTGACTCTCCCGCTCCAACA] [-] EMBL BI504690 [TTCCAAGCAAGGACAGTTCACACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTTNCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCCTATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTTAATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGACTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCTGTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGAACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGATGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGCTTCATCGCTTGGAGCAGCATTAACAATGCCAATTTGCGGATTTTTAATTGCTTACTTTGGATGGGAATCTGTATTCTACGTAACAGGAACAATAGGTCTCATGTGGAGTATAGCTTGGTTTCTCTTAATATTTGACTCTCCCGCTCCAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_977#0 TTAACGTGCAAACAAGTGTTAAACATCATGGTGATCTTTGGTTTCATGTTAAATTATATG 60 consensus_977#1 ------------------------------------------------------------ consensus_977#0 TTACGTGTAAACATGACGATTGCCATAGTATCAATGGTGATTCCAAGCAAGGACAGTTCA 120 consensus_977#1 ----------------------------------------TTCCAAGCAAGGACAGTTCA 20 ******************** consensus_977#0 CACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTT 180 consensus_977#1 CACTCGAGCAGCTATAATAGAACAAACGAGTGCTTCGATCACGAAATCAAAATAAACGTT 80 ************************************************************ consensus_977#0 TCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCC 240 consensus_977#1 NCTCTGCACAATAACGAATCAGCGATGATCGCTTCTAATTCTACTATATCTTCGTTCCCC 140 *********************************************************** consensus_977#0 TATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTT 300 consensus_977#1 TATCCACCTAGGCACGAAGAAATTAATCAAACGAGATATCCGTGGAACGAATATGAAGTT 200 ************************************************************ consensus_977#0 AATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGA 360 consensus_977#1 AATATCATATTGGGCAGTTTTTTCTGGGGTTACATATGTACCGAGTTACCGGGTGGACGA 260 ************************************************************ consensus_977#0 CTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCT 420 consensus_977#1 CTCGCTGAAATAATAGGACCTAAAAAAGTTTTTGGATACAGTATGTTAGTATCCAGCGCT 320 ************************************************************ consensus_977#0 GTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGA 480 consensus_977#1 GTTACATTTTTAACACCCTGGTTGGCAACTTATGGTTATATCGCAGTTGCCATGTTAAGA 380 ************************************************************ consensus_977#0 ACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGA 540 consensus_977#1 ACAGTAATTGGATTTATGTTGGGAGCTACTTGGCCTGCCATCCAACCAATGACCGCCCGA 440 ************************************************************ consensus_977#0 TGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGGTAAATAAATGTAT 600 consensus_977#1 TGGATACCACCAACGGAACGCAGCAAATTTGTCTCAAATATGATGGCTTCATCGCTTGGA 500 ********************************************** * ** * consensus_977#0 GGATTATAAAATAAAATGGAAGG-AAACATTTAGATAAATTTTTTTTTTAATATTCGTAA 659 consensus_977#1 GCAGCATTAACAATGCCAATTTGCGGATTTTTAATTGCTTACTTTGGATGGGAATCTGTA 560 * * ** ** * * * **** * * *** * * ** * consensus_977#0 TTTTCAATAAAAAAAA-------------------------------------------- 675 consensus_977#1 TTCTACGTAACAGGAACAATAGGTCTCATGTGGAGTATAGCTTGGTTTCTCTTAATATTT 620 ** * *** * ** consensus_977#0 ------------------ consensus_977#1 GACTCTCCCGCTCCAACA 638 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |