These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_98#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 605 fasta sequence [GCGTGCGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAAAAAAAAAAAAAAAAACTCCAGACTAGGTTAATTGCCACTCCCTTGCGACCGAAAC] [+] EMBL BE844260 [GCGTGCGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATA ] [+] EMBL AF393494 [ CGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAA ] [+] EMBL BE844410 [ CGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTG ] [+] EMBL BE844457 [ CGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATTAAAAAAAAAAAAAAAAACTCCAGACTAGGTTAATTGCCACTCCCTTGCGACCGAAAC] [+] EMBL AF166496 [ GAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCTGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTA ] consensusID : consensus_98#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 517 fasta sequence [GACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGAAATAATGCTGGGCCTGTCTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAATAAAAAAAAGAAAAAGGAGAGACTCTCCCAGAAGAAGAAAATCCCAGAAGAAAATGCTGATACGATAACCGGTGAAGAGATAAATACATAAAAATGTGTATAATGTAGGTGAGAAAAGTG] [-] EMBL BE844676 [GACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGT TGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAATAAAAAAAAGAAAAAGGAGAGACTCTCCCAGAAGAAGAAAATCCCAGAAGAAAATGCTGATACGATAACCGGTGAAGAGATAAATACATAAAAATGTGTATAATGTAGGTGAGAAAAGTG] [-] EMBL BE844411 [ tACTAATGCTGGGCCTGTCTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAA ] consensusID : consensus_98#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [GAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAA] [-] EMBL BE844283 [GAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_98#0 GCGTGCGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCT 60 consensus_98#2 -------------------------------GAGCATGGCTAGCAACACGAAGCAAGCCT 29 consensus_98#1 ------------------------------------------------------------ consensus_98#0 TCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATT 120 consensus_98#2 TCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATT 89 consensus_98#1 ------------------------------------------------------------ consensus_98#0 GGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGC 180 consensus_98#2 GGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGC 149 consensus_98#1 -----------------------------------GACAAGGCTCGGTGCATGAGCGAGC 25 ************************* consensus_98#0 ACGGGACGACG-CAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCG 239 consensus_98#2 ACGGGACGACG-CAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCG 208 consensus_98#1 ACGGGACGACGGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCG 85 *********** ************************************************ consensus_98#0 TCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCG 299 consensus_98#2 TCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCG 268 consensus_98#1 TCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCG 145 ************************************************************ consensus_98#0 AACGTGGACGAGGATATAATGCTGGGCCTGT-TGCCGGATCAACTTCAGGAAAGGGCTCA 358 consensus_98#2 AACGTGGACGAGGATATAAT---------------------------------------- 288 consensus_98#1 AACGTGGACGAGGAAATAATGCTGGGCCTGTCTGCCGGATCAACTTCAGGAAAGGGCTCA 205 ************** ***** consensus_98#0 GTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAA 418 consensus_98#2 --------------------------------------------------------ACAA 292 consensus_98#1 GTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAA 265 **** consensus_98#0 TCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGC 478 consensus_98#2 TCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGC 352 consensus_98#1 TCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGC 325 ************************************************************ consensus_98#0 GACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAA 538 consensus_98#2 GACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAA 412 consensus_98#1 GACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAA 385 ************************************************************ consensus_98#0 TTGCGAAATAAAAAAAAAAAAAAAAAACTCCAGACTAGGTTAATTGCCACTCCCTTGCGA 598 consensus_98#2 TTGCGAAA---------------------------------------------------- 420 consensus_98#1 TTGCGAAATAAATAAAAAAAAGAAAAAGGAGAGACTCTCCCAGAAGAAGAAAATCCCAGA 445 ******** consensus_98#0 CCGAAAC----------------------------------------------------- 605 consensus_98#2 ------------------------------------------------------------ consensus_98#1 AGAAAATGCTGATACGATAACCGGTGAAGAGATAAATACATAAAAATGTGTATAATGTAG 505 consensus_98#0 ------------ consensus_98#2 ------------ consensus_98#1 GTGAGAAAAGTG 517 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |