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Apis mellifera
cluster # 98 cluster # 98       Sequences # 8       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_98#0 length = 605 sequences # 5  
consensus_98#1 length = 517 sequences # 2  
consensus_98#2 length = 420 sequences # 1  

consensusID : consensus_98#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 605
fasta sequence
                              [GCGTGCGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAAAAAAAAAAAAAAAAACTCCAGACTAGGTTAATTGCCACTCCCTTGCGACCGAAAC]

[+] EMBL BE844260             [GCGTGCGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATA                                                                                                                                                                                                              ]
[+] EMBL AF393494             [     CGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAA                                                       ]
[+] EMBL BE844410             [     CGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTG                                                                                                          ]
[+] EMBL BE844457             [                       CGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATTAAAAAAAAAAAAAAAAACTCCAGACTAGGTTAATTGCCACTCCCTTGCGACCGAAAC]
[+] EMBL AF166496             [                                                 GAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCTGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTA                                                                                                                                                      ]


>consensus_98#0 GCGTGCGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCT TCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATT GGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGC ACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGT CCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGA ACGTGGACGAGGATATAATGCTGGGCCTGTTGCCGGATCAACTTCAGGAAAGGGCTCAGT CGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATC TCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGA CGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATT GCGAAATAAAAAAAAAAAAAAAAAACTCCAGACTAGGTTAATTGCCACTCCCTTGCGACC GAAAC



consensusID : consensus_98#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 517
fasta sequence
                              [GACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGAAATAATGCTGGGCCTGTCTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAATAAAAAAAAGAAAAAGGAGAGACTCTCCCAGAAGAAGAAAATCCCAGAAGAAAATGCTGATACGATAACCGGTGAAGAGATAAATACATAAAAATGTGTATAATGTAGGTGAGAAAAGTG]

[-] EMBL BE844676             [GACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATGCTGGGCCTGT TGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAATAAAAAAAAGAAAAAGGAGAGACTCTCCCAGAAGAAGAAAATCCCAGAAGAAAATGCTGATACGATAACCGGTGAAGAGATAAATACATAAAAATGTGTATAATGTAGGTGAGAAAAGTG]
[-] EMBL BE844411             [                                                                                                                                                              tACTAATGCTGGGCCTGTCTGCCGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAA                                                                                                                        ]


>consensus_98#1 GACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGGCAAGCGCAAATCGACGACGTGGA CAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGC GTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGAAATAATGCTGGGCCTGTCTGC CGGATCAACTTCAGGAAAGGGCTCAGTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCT CCGATAATTGCAACAAGATATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACG TATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAAC AGGCTGTGTTGAAAGAAAGAAATAATTGCGAAATAAATAAAAAAAAGAAAAAGGAGAGAC TCTCCCAGAAGAAGAAAATCCCAGAAGAAAATGCTGATACGATAACCGGTGAAGAGATAA ATACATAAAAATGTGTATAATGTAGGTGAGAAAAGTG



consensusID : consensus_98#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence
                              [GAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAA]

[-] EMBL BE844283             [GAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATACAATCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAA]


>consensus_98#2 GAGCATGGCTAGCAACACGAAGCAAGCCTTCATCTATTCTCTCGCCCTCCTCTGCCTCCA CGCGATTTTCGTGAACGCAGCGCCGGATTGGGTGCCGCCCGAGGTGTTCGATTTGGTCGC GGAGGACAAGGCTCGGTGCATGAGCGAGCACGGGACGACGCAAGCGCAAATCGACGACGT GGACAAAGGGAACCTGGTAAACGAACCGTCCATCACTTGCTACATGTATTGCTTGTTGGA GGCGTTCAGCTTGGTGGACGATGAAGCGAACGTGGACGAGGATATAATACAATCTCGCCA AATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGCGACGAGAA GACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAATTGCGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_98#0      GCGTGCGGGCAAAATAATTGTTACGCGCGAAGAGCATGGCTAGCAACACGAAGCAAGCCT 60
consensus_98#2      -------------------------------GAGCATGGCTAGCAACACGAAGCAAGCCT 29
consensus_98#1      ------------------------------------------------------------
                                                                                

consensus_98#0      TCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATT 120
consensus_98#2      TCATCTATTCTCTCGCCCTCCTCTGCCTCCACGCGATTTTCGTGAACGCAGCGCCGGATT 89
consensus_98#1      ------------------------------------------------------------
                                                                                

consensus_98#0      GGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGC 180
consensus_98#2      GGGTGCCGCCCGAGGTGTTCGATTTGGTCGCGGAGGACAAGGCTCGGTGCATGAGCGAGC 149
consensus_98#1      -----------------------------------GACAAGGCTCGGTGCATGAGCGAGC 25
                                                       *************************

consensus_98#0      ACGGGACGACG-CAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCG 239
consensus_98#2      ACGGGACGACG-CAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCG 208
consensus_98#1      ACGGGACGACGGCAAGCGCAAATCGACGACGTGGACAAAGGGAACCTGGTAAACGAACCG 85
                    *********** ************************************************

consensus_98#0      TCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCG 299
consensus_98#2      TCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCG 268
consensus_98#1      TCCATCACTTGCTACATGTATTGCTTGTTGGAGGCGTTCAGCTTGGTGGACGATGAAGCG 145
                    ************************************************************

consensus_98#0      AACGTGGACGAGGATATAATGCTGGGCCTGT-TGCCGGATCAACTTCAGGAAAGGGCTCA 358
consensus_98#2      AACGTGGACGAGGATATAAT---------------------------------------- 288
consensus_98#1      AACGTGGACGAGGAAATAATGCTGGGCCTGTCTGCCGGATCAACTTCAGGAAAGGGCTCA 205
                    ************** *****                                        

consensus_98#0      GTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAA 418
consensus_98#2      --------------------------------------------------------ACAA 292
consensus_98#1      GTCGGTCATGGGCAAATGCCTTCCAACCTCCGGCTCCGATAATTGCAACAAGATATACAA 265
                                                                            ****

consensus_98#0      TCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGC 478
consensus_98#2      TCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGC 352
consensus_98#1      TCTCGCCAAATGCGTCCAAGAATCTGCACCGGACGTATGGTTCGTTATCTAAGGGGACGC 325
                    ************************************************************

consensus_98#0      GACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAA 538
consensus_98#2      GACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAA 412
consensus_98#1      GACGAGAAGACTATTTTTCTGGGAGGATCGAGAACAGGCTGTGTTGAAAGAAAGAAATAA 385
                    ************************************************************

consensus_98#0      TTGCGAAATAAAAAAAAAAAAAAAAAACTCCAGACTAGGTTAATTGCCACTCCCTTGCGA 598
consensus_98#2      TTGCGAAA---------------------------------------------------- 420
consensus_98#1      TTGCGAAATAAATAAAAAAAAGAAAAAGGAGAGACTCTCCCAGAAGAAGAAAATCCCAGA 445
                    ********                                                    

consensus_98#0      CCGAAAC----------------------------------------------------- 605
consensus_98#2      ------------------------------------------------------------
consensus_98#1      AGAAAATGCTGATACGATAACCGGTGAAGAGATAAATACATAAAAATGTGTATAATGTAG 505
                                                                                

consensus_98#0      ------------
consensus_98#2      ------------
consensus_98#1      GTGAGAAAAGTG 517
                                




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)