cluster # 991

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Apis mellifera
cluster # 991 cluster # 991 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_991#0 length = 546 sequences # 2

consensus_991#1 length = 427 sequences # 1

consensusID : consensus_991#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 546
fasta sequence

                              [CTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCGGCACACGTGCTCGAGCTAATTTCCTGGCGCTGTGACGAAATATTTTGATACGCGAATTTACTTTCGAGAAGGCTGATTTTTATAATTTTTAATCCGCGAATTAATATTCGATTTTTAAATTAAGGTCTAAAAAATTTATTTTTTAACTGATTTCCAGACTTTTTGTTTTTTTTGTAATCCCTCTCGCGCAGGGAGAAATGGACTGATTAGACTGTTTTTTTTTTTTTTTTCGATTGGTTTAAACTTTTTCTTGATCATGTGATATTGTATTACCAAAGAGCATCGGGAAATTGTAAAAAATTTCTCGGATTTTCGAACGGTATCCACCTTGAACGATGATATGAATTCAATGATAAGACGCAATTTTTATCGTTTCCCGCAATTAACTGTGTTTCGCTGTACTTTTTACAGACAGACAGGACGCGAAACCGTTTTGAAAAACCGTTCCATTTATGATATGCATTTATAATTTAGTCGTTTC]

[+] EMBL BI510362             [CTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCGGCACACGTGCTCGAGCTAATTTCCTGGCGCTGTGACGAAATATTTTGATACGCGAATTTACTTTCGAGAAGGCTGATTTTTATAATTTTTAATCCGCGAATTAATATTCGATTTTTAAATTAAGGTCTAAAAAATTTATTTTTTAACTGATTTCCAGACTTTTTGTTTTTTTTGTAATCCCTCTCGCGCAGGGAGAAATGGACTGATTAGACTGTTTTTTTTTTTTTTTTCGATTGGTTTAAACTTTTTCTTGATCATGTGATATTGTATTACCAAAGAGCATCGGGAAATTGTAAAAAATTTCTCGGATTTTCGAACGGTATCCACCTTGAACGATGATATGAATTCAATGATAAGACGCAATTTTTATCGTTTCCCGCAATTAACTGTGTTTCGCTGTACTTTTTACAGACAGACAGGACGCGAAACCGTTTTGAAAAACCGTTCCATTTATGATATGCATTTATAATTTAGTCGTTTC]
[+] EMBL BI511299             [                                                  GCCAATCACCGGTCGGCACACGTGCTCGAGCTAATTTCCTGGCGCTGTGACGAAATATTTTGATACGCGAATTTACTTTCGAGAAGGCTGATTTTTATAATTTTTAATCCGCGAATTAATATTCGATTTTTAAATTAAGGTCTAAAAAATTTATTTTTTAACTGATTTCCAGACTTTTTGTTTTTTTTGTAATCCCTCTCGCGCAGGGAG                                                                                                                                                                                                                                                                                              ]




>consensus_991#0
CTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACC
GGTCGGCACACGTGCTCGAGCTAATTTCCTGGCGCTGTGACGAAATATTTTGATACGCGA
ATTTACTTTCGAGAAGGCTGATTTTTATAATTTTTAATCCGCGAATTAATATTCGATTTT
TAAATTAAGGTCTAAAAAATTTATTTTTTAACTGATTTCCAGACTTTTTGTTTTTTTTGT
AATCCCTCTCGCGCAGGGAGAAATGGACTGATTAGACTGTTTTTTTTTTTTTTTTCGATT
GGTTTAAACTTTTTCTTGATCATGTGATATTGTATTACCAAAGAGCATCGGGAAATTGTA
AAAAATTTCTCGGATTTTCGAACGGTATCCACCTTGAACGATGATATGAATTCAATGATA
AGACGCAATTTTTATCGTTTCCCGCAATTAACTGTGTTTCGCTGTACTTTTTACAGACAG
ACAGGACGCGAAACCGTTTTGAAAAACCGTTCCATTTATGATATGCATTTATAATTTAGT
CGTTTC

consensusID : consensus_991#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [AACCGGATCAATTGTGAGGGAAAGTTCGTGGAACTTGGCGCGTGCCGCGACAACGCGTCGAATTTTAAAAAAAAGCCATTGAAAAACGGCTTAATGTCCATTCGGTTCGACGAACTTTTCGCGGCTATCGCACTATCGATCACTACCGTAGATTCTAGCTTCCGTTTGAAACCGTCATTGAACCGTTGAACTTCATACGCAAAAGGAAAAAAAGAGGAAGAAAAAAAAAAAAAAGGAAAAAAAGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAGGAAAAAATGGGGAAAATGGGGTTTGTTGNNTAGAGGTCTTTGTTATATACGTTNNNGTTGTCACATTATCTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCGGCACACGTGCTCGAG]

[+] EMBL BI510568             [AACCGGATCAATTGTGAGGGAAAGTTCGTGGAACTTGGCGCGTGCCGCGACAACGCGTCGAATTTTAAAAAAAAGCCATTGAAAAACGGCTTAATGTCCATTCGGTTCGACGAACTTTTCGCGGCTATCGCACTATCGATCACTACCGTAGATTCTAGCTTCCGTTTGAAACCGTCATTGAACCGTTGAACTTCATACGCAAAAGGAAAAAAAGAGGAAGAAAAAAAAAAAAAAGGAAAAAAAGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAGGAAAAAATGGGGAAAATGGGGTTTGTTGNNTAGAGGTCTTTGTTATATACGTTNNNGTTGTCACATTATCTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCGGCACACGTGCTCGAG]




>consensus_991#1
AACCGGATCAATTGTGAGGGAAAGTTCGTGGAACTTGGCGCGTGCCGCGACAACGCGTCG
AATTTTAAAAAAAAGCCATTGAAAAACGGCTTAATGTCCATTCGGTTCGACGAACTTTTC
GCGGCTATCGCACTATCGATCACTACCGTAGATTCTAGCTTCCGTTTGAAACCGTCATTG
AACCGTTGAACTTCATACGCAAAAGGAAAAAAAGAGGAAGAAAAAAAAAAAAAAGGAAAA
AAAGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAGGAAAAAATGGGGAAAATGGGGT
TTGTTGNNTAGAGGTCTTTGTTATATACGTTNNNGTTGTCACATTATCTTTCGTTCGATC
GACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCGGCACACGT
GCTCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_991#0      CTTTCGTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACC 60
consensus_991#1      ------------------------------------------------------------
                                                                                 

consensus_991#0      GGTCGGCACACGTGCTCGAGCTAATTTCCTGGCGCTGTGACGAAATATTTTGATACGCGA 120
consensus_991#1      ------------------------------------------------------AACCGG 6
                                                                           *  ** 

consensus_991#0      ATTTACTTTCGAGAAGGCTGATTTTTATAATTTTTAATCCGC-GAATTAATAT-TCGATT 178
consensus_991#1      ATCAATT---GTGAGGGAAAGTTCGTGGAACTTGGCGCGTGCCGCGACAACGCGTCGAAT 63
                     **  * *   * ** **    **  *  ** **       ** *    **    **** *

consensus_991#0      TTTAAATTAAGGTC--TAAAAAAT---TTATTTTTTAACTGATTTC-CAGACTTTTTGTT 232
consensus_991#1      TTTAAAAAAAAGCCATTGAAAAACGGCTTAATGTCCATTCGGTTCGACGAACTTTTCGCG 123
                     ******  ** * *  * *****    *** * *  *   * **   *  ****** *  

consensus_991#0      TTTTTTGTAATCCCTCTCGCGCAGGGAGAAATGGACTGATTAGACTGTTTTTTTTTTTTT 292
consensus_991#1      GCTATCGCACTATCGATCACTACCG------TAGATT--CTAGCTTCCGTTTGAAACCGT 175
                       * * * * *  *  ** *    *      * ** *   ***  *   ***       *

consensus_991#0      TTTCGATTGGTTTAAACTTTTTCTTGATC---ATGTGATATTGTATTACCAAAGAGCATC 349
consensus_991#1      CATTGAACCGTTGAACTTCATACGCAAAAGGAAAAAAAGAGGAAGAAAAAAAAAAAAAAG 235
                       * **   *** **  *  * *   *     *    * *       *  *** *  *  

consensus_991#0      GGGAAATTGTAAAAAATTTCTCGGATTTTCGAACGGTATCCACCTTGAACGATGATATGA 409
consensus_991#1      GAAAAAAAGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAG--GAAAAAATGGGGAAA 293
                     *  ***  ********        *     ***  * *   *     **  ***     *

consensus_991#0      ATTCAAT--GATAAGACGCAATTTTTATCGTTTCCCGCAATTAACTGTGTTTCGCTGTAC 467
consensus_991#1      ATGGGGTTTGTTGNNTAGAGGTCTTTGTTATATAC-GTTNNNGTTGTCACATTATCTTTC 352
                     **    *  * *     *   * *** *  * * * *              *     * *

consensus_991#0      TTTTTACAGAC-AGACAGGACGCGAAACCGT--TTTGAAAAACCGTTCCATTTATGATAT 524
consensus_991#1      GTTCGATCGACGAGTTTGCTCGCAATTTTGCAATTCGAGCCACCGGCCAATCACCGGTCG 412
                      **  *  *** **   *  *** *    *   ** **   ****  * **    * *  

consensus_991#0      GCATTTATAATTTAGTCGTTTC 546
consensus_991#1      GCACACGTGCTCGAG------- 427
                     ***    *  *  **

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)