These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [GGAAGAAATTCATTCTGAAGAATGGAATGAACGAAAATTGGACGATACGATCGTCAAATACGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATTTTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGTTTTCGTTTCGTTTAGGTTCAGGACAACAGTGTACGCTCGCTATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGGTGCGTGTACGTAGACCGCATGCAAAAAAAAAAAAAAATACACACACACACACACACACACACACACACGTTGCAACATTGTAGGATCCTCCCGGTACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTTGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAACCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGA] [+] EMBL BI513405 [GGAAGAAATTCATTCTGAAGAATGGAATGAACGAAAATTGGACGATACGATCGTCAAATACGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATTTTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGTTTTCGTTTCGTTTAGGTTCAGGACAACAGTGTACGCTCGCTATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGGTGCGTGTACGTAGACCGCATGCAAAAAAAAAAAAAAATACACACACACACACACACACACACACACACGTTGCAACATTGTAGGATCCTCCCGGTACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTTGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAACCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGA] consensusID : consensus_993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [CACGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATTTTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGTTTTCGTTTCGTTTAGGTTCAGGACAACAGTGTACGCTCGCTATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGGTGCGTGTACGTAGNNCGCATGCAAAAAAAAAAAAAAAATACACACACACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAGAGTTACGAGAGGAC] [-] EMBL BI516934 [CACGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATTTTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGTTTTCGTTTCGTTTAGGTTCAGGACAACAGTGTACGCTCGCTATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGGTGCGTGTACGTAGNNCGCATGCAAAAAAAAAAAAAAAATACACACACACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAGAGTTACGAGAGGAC] consensusID : consensus_993#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence [GTGTTTCCCAAAGTGGTTTTGAGACACGATCTCCCTTCGTAATGACTAAATAAATTGCGATTTTTTTACTTAATTACAAAAAAAAAATCAAAAATATAATATTATTAACAAGATAATATAAATATAACATTTTATTTTTAGAGATGAATCGTACGCACACACATACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAGAGTTACGAGAGGACGTTGTTACTGTAAAGATATGTAAGTTTATTTATCGCTAATA] [-] EMBL BI510146 [GTGTTTCCCAAAGTGGTTTTGAGACACGATCTCCCTTCGTAATGACTAAATAAATTGCGATTTTTTTACTTAATTACAAAAAAAAAATCAAAAATATAATATTATTAACAAGATAATATAAATATAACATTTTATTTTTAGAGATGAATCGTACGCACACACATACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAGAGTTACGAGAGGACGTTGTTACTGTAAAGATATGTAAGTTTATTTATCGCTAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_993#0 GGAAGAAATTCATTCTGAAGAATGGAATGAACGAAAATTGGACGATACGATCGTCAAATA 60 consensus_993#1 ----------------------------------------------------------CA 2 consensus_993#2 ------------------------------------------------------------ consensus_993#0 CGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATT 120 consensus_993#1 CGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATT 62 consensus_993#2 ------------------------------------------------------------ consensus_993#0 TTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGT--TTTCGTTTCGTTTAGGTTCAGG 178 consensus_993#1 TTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGT--TTTCGTTTCGTTTAGGTTCAGG 120 consensus_993#2 ---------GTGTTTCCCAAAGTGGTTTTGAGACACGATCTCCCTTCGTAATGACTAAAT 51 * ** * ** * ** ** * * ** ***** * * * consensus_993#0 ACAACAGTGTACGCTCGCT-ATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGG 237 consensus_993#1 ACAACAGTGTACGCTCGCT-ATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGG 179 consensus_993#2 AAATTGCGATTTTTTTACTTAATTACAAAAAAAAAATCAAAAATATAATATTATTAACAA 111 * * * * ** * * * * ** * * ** * * consensus_993#0 TGCGTGTACGTAGACCGCATGCAAAAAAAAAAAAAAATACACACACACACACACACACAC 297 consensus_993#1 TGCGTGTACGTAGNNCGCATGCAAAAAAAAAAAAAAA-------------ATACACACAC 226 consensus_993#2 GATA-ATATAAATATAACATTTTATTTTTAGAGATGAATC------GTACGCACACACAT 164 ** * *** * * * * * ******* consensus_993#0 ACACACACGTTGCAACATTGTAGGATCCTCCCGGTACGGAATCTCGCGTCGTATCGATAT 357 consensus_993#1 ACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATAT 286 consensus_993#2 ACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATAT 224 ******** *********************** ************************** consensus_993#0 TTCTATAAAATACGACCCGTTTTGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAAC 417 consensus_993#1 TTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAAC 346 consensus_993#2 TTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAAC 284 ********************** ************************************* consensus_993#0 ACCAACCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGA 477 consensus_993#1 ACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGA 406 consensus_993#2 ACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGA 344 ***** ****************************************************** consensus_993#0 GTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGA------------------- 518 consensus_993#1 GTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAG 466 consensus_993#2 GTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAG 404 ***************************************** consensus_993#0 ------------------------------------------------------- consensus_993#1 AGTTACGAGAGGAC----------------------------------------- 480 consensus_993#2 AGTTACGAGAGGACGTTGTTACTGTAAAGATATGTAAGTTTATTTATCGCTAATA 459 |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |