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Apis mellifera
cluster # 993 cluster # 993       Sequences # 3       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_993#0 length = 518 sequences # 1  
 consensus_993#1 length = 480 sequences # 1  
consensus_993#2 length = 459 sequences # 1  
consensusID : consensus_993#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 518
fasta sequence 
                              [GGAAGAAATTCATTCTGAAGAATGGAATGAACGAAAATTGGACGATACGATCGTCAAATACGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATTTTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGTTTTCGTTTCGTTTAGGTTCAGGACAACAGTGTACGCTCGCTATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGGTGCGTGTACGTAGACCGCATGCAAAAAAAAAAAAAAATACACACACACACACACACACACACACACACGTTGCAACATTGTAGGATCCTCCCGGTACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTTGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAACCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGA]

[+] EMBL BI513405             [GGAAGAAATTCATTCTGAAGAATGGAATGAACGAAAATTGGACGATACGATCGTCAAATACGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATTTTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGTTTTCGTTTCGTTTAGGTTCAGGACAACAGTGTACGCTCGCTATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGGTGCGTGTACGTAGACCGCATGCAAAAAAAAAAAAAAATACACACACACACACACACACACACACACACGTTGCAACATTGTAGGATCCTCCCGGTACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTTGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAACCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGA]




>consensus_993#0
GGAAGAAATTCATTCTGAAGAATGGAATGAACGAAAATTGGACGATACGATCGTCAAATA
CGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATT
TTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGTTTTCGTTTCGTTTAGGTTCAGGAC
AACAGTGTACGCTCGCTATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGGTGC
GTGTACGTAGACCGCATGCAAAAAAAAAAAAAAATACACACACACACACACACACACACA
CACACGTTGCAACATTGTAGGATCCTCCCGGTACGGAATCTCGCGTCGTATCGATATTTC
TATAAAATACGACCCGTTTTGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACC
AACCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTA
CGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGA

consensusID : consensus_993#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence 
                              [CACGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATTTTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGTTTTCGTTTCGTTTAGGTTCAGGACAACAGTGTACGCTCGCTATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGGTGCGTGTACGTAGNNCGCATGCAAAAAAAAAAAAAAAATACACACACACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAGAGTTACGAGAGGAC]

[-] EMBL BI516934             [CACGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATTTTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGTTTTCGTTTCGTTTAGGTTCAGGACAACAGTGTACGCTCGCTATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGGTGCGTGTACGTAGNNCGCATGCAAAAAAAAAAAAAAAATACACACACACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAGAGTTACGAGAGGAC]




>consensus_993#1
CACGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAA
TTTTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGTTTTCGTTTCGTTTAGGTTCAGG
ACAACAGTGTACGCTCGCTATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGGT
GCGTGTACGTAGNNCGCATGCAAAAAAAAAAAAAAAATACACACACACACACACATTGCA
ACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACG
ACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAATCGACAGGA
ACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCT
CGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAGAGTTACGAGAGGAC

consensusID : consensus_993#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence 
                              [GTGTTTCCCAAAGTGGTTTTGAGACACGATCTCCCTTCGTAATGACTAAATAAATTGCGATTTTTTTACTTAATTACAAAAAAAAAATCAAAAATATAATATTATTAACAAGATAATATAAATATAACATTTTATTTTTAGAGATGAATCGTACGCACACACATACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAGAGTTACGAGAGGACGTTGTTACTGTAAAGATATGTAAGTTTATTTATCGCTAATA]

[-] EMBL BI510146             [GTGTTTCCCAAAGTGGTTTTGAGACACGATCTCCCTTCGTAATGACTAAATAAATTGCGATTTTTTTACTTAATTACAAAAAAAAAATCAAAAATATAATATTATTAACAAGATAATATAAATATAACATTTTATTTTTAGAGATGAATCGTACGCACACACATACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAGAGTTACGAGAGGACGTTGTTACTGTAAAGATATGTAAGTTTATTTATCGCTAATA]




>consensus_993#2
GTGTTTCCCAAAGTGGTTTTGAGACACGATCTCCCTTCGTAATGACTAAATAAATTGCGA
TTTTTTTACTTAATTACAAAAAAAAAATCAAAAATATAATATTATTAACAAGATAATATA
AATATAACATTTTATTTTTAGAGATGAATCGTACGCACACACATACACACACATTGCAAC
ATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATATTTCTATAAAATACGAC
CCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAACACCAATCGACAGGAAC
AACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGAGTACGAGGAAATCTCG
ATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAGAGTTACGAGAGGACGT
TGTTACTGTAAAGATATGTAAGTTTATTTATCGCTAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_993#0      GGAAGAAATTCATTCTGAAGAATGGAATGAACGAAAATTGGACGATACGATCGTCAAATA 60
consensus_993#1      ----------------------------------------------------------CA 2
consensus_993#2      ------------------------------------------------------------
                                                                                 

consensus_993#0      CGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATT 120
consensus_993#1      CGGCGGATATATGGGGTATTGGACGATTATGATGATCGATAATAATCGAACAAGAGAATT 62
consensus_993#2      ------------------------------------------------------------
                                                                                 

consensus_993#0      TTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGT--TTTCGTTTCGTTTAGGTTCAGG 178
consensus_993#1      TTCGGCTCGATACTTAACGAACTCGTCTTCGAGCGT--TTTCGTTTCGTTTAGGTTCAGG 120
consensus_993#2      ---------GTGTTTCCCAAAGTGGTTTTGAGACACGATCTCCCTTCGTAATGACTAAAT 51
                               *  **  * ** * ** **    *    * **  *****   *  * *  

consensus_993#0      ACAACAGTGTACGCTCGCT-ATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGG 237
consensus_993#1      ACAACAGTGTACGCTCGCT-ATCGTTAGGATTTTATTCGGAGGAAGCGTAAAAGCTCCGG 179
consensus_993#2      AAATTGCGATTTTTTTACTTAATTACAAAAAAAAAATCAAAAATATAATATTATTAACAA 111
                     * *      *    *  ** *     *  *    * **  *   *   **  *    *  

consensus_993#0      TGCGTGTACGTAGACCGCATGCAAAAAAAAAAAAAAATACACACACACACACACACACAC 297
consensus_993#1      TGCGTGTACGTAGNNCGCATGCAAAAAAAAAAAAAAA-------------ATACACACAC 226
consensus_993#2      GATA-ATATAAATATAACATTTTATTTTTAGAGATGAATC------GTACGCACACACAT 164
                           **   *     ***   *     * * *  *               ******* 

consensus_993#0      ACACACACGTTGCAACATTGTAGGATCCTCCCGGTACGGAATCTCGCGTCGTATCGATAT 357
consensus_993#1      ACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATAT 286
consensus_993#2      ACACACACATTGCAACATTGTAGGATCCTCCCAATACGGAATCTCGCGTCGTATCGATAT 224
                     ******** ***********************  **************************

consensus_993#0      TTCTATAAAATACGACCCGTTTTGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAAC 417
consensus_993#1      TTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAAC 346
consensus_993#2      TTCTATAAAATACGACCCGTTTCGACGGGGTGGAAATGTGTTGTGTGACACACGAGAAAC 284
                     ********************** *************************************

consensus_993#0      ACCAACCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGA 477
consensus_993#1      ACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGA 406
consensus_993#2      ACCAATCGACAGGAACAACACACGTATATACGGGAAGAGAGTGGCACGTGGAAATAGAGA 344
                     ***** ******************************************************

consensus_993#0      GTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGA------------------- 518
consensus_993#1      GTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAG 466
consensus_993#2      GTACGAGGAAATCTCGATCTGTATGGATTTTCGTGGATAGATATTACCATATTTTCCGAG 404
                     *****************************************                   

consensus_993#0      -------------------------------------------------------
consensus_993#1      AGTTACGAGAGGAC----------------------------------------- 480
consensus_993#2      AGTTACGAGAGGACGTTGTTACTGTAAAGATATGTAAGTTTATTTATCGCTAATA 459


Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)