cluster # 997

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Apis mellifera
cluster # 997 cluster # 997 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_997#0 length = 569 sequences # 1

consensus_997#1 length = 499 sequences # 1
consensus_997#2 length = 390 sequences # 1

consensusID : consensus_997#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 569
fasta sequence

                              [ATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTTATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCTTTATATTTTAACAAAAATCACATTTGAATGCGGTTTTTATCATTATTTTTTAAATTAGAAAAGAAAAATTGAGAAGTGCATCGAGAAAATTAACATTTTTTTCAGGAATAGTATAGTTTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATACAAGGTTCACCAAATACTTTATTATCTGCAGACCTTCCGCATCATCGGGTCAATACGATCGAGATCTTATCATCTAATGCGTGACGCGTCGACATTTAACCGTGGTCGNNNTTCAGTAATCGGTTACGTATATTTTCAGAATATACCTCTGTTATGTGTTTATACTGATTATTTAATTTTTATTTAATTTTTTTTAAACAATTTTGAAAATGATTAAATAATGGAAATGATAACAATTAATCAAATATTGANATAAAAGTTTCTTAAATTGGTT]

[+] EMBL BI507762             [ATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTTATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCTTTATATTTTAACAAAAATCACATTTGAATGCGGTTTTTATCATTATTTTTTAAATTAGAAAAGAAAAATTGAGAAGTGCATCGAGAAAATTAACATTTTTTTCAGGAATAGTATAGTTTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATACAAGGTTCACCAAATACTTTATTATCTGCAGACCTTCCGCATCATCGGGTCAATACGATCGAGATCTTATCATCTAATGCGTGACGCGTCGACATTTAACCGTGGTCGNNNTTCAGTAATCGGTTACGTATATTTTCAGAATATACCTCTGTTATGTGTTTATACTGATTATTTAATTTTTATTTAATTTTTTTTAAACAATTTTGAAAATGATTAAATAATGGAAATGATAACAATTAATCAAATATTGANATAAAAGTTTCTTAAATTGGTT]




>consensus_997#0
ATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTTA
TTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCTT
TATATTTTAACAAAAATCACATTTGAATGCGGTTTTTATCATTATTTTTTAAATTAGAAA
AGAAAAATTGAGAAGTGCATCGAGAAAATTAACATTTTTTTCAGGAATAGTATAGTTTAC
CGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATACAAGG
TTCACCAAATACTTTATTATCTGCAGACCTTCCGCATCATCGGGTCAATACGATCGAGAT
CTTATCATCTAATGCGTGACGCGTCGACATTTAACCGTGGTCGNNNTTCAGTAATCGGTT
ACGTATATTTTCAGAATATACCTCTGTTATGTGTTTATACTGATTATTTAATTTTTATTT
AATTTTTTTTAAACAATTTTGAAAATGATTAAATAATGGAAATGATAACAATTAATCAAA
TATTGANATAAAAGTTTCTTAAATTGGTT

consensusID : consensus_997#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [AATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTTATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCTTTATATTTTTAACAAAAATCACATTTGAATGCGGAATAGTATAGTTTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATACAAGATAAATTTATACTGAAGGGACCCCGGTTAGCGGGGGTTAACATCATCGGGACGGCAGATGTCAGAATGCCAGAGCAGAGCAACGATTACCGCGTGGTGGTGTTTGGAGCGGGTGGTGTTGGCAAGAGTTCTCTCGTATTGCGTTTCGTGAAAGGAACTTTTCGTGAATCCTATATACCTACTATCGAGGATACATATAGACAGGTGATAAGCTGCAATAAAAATATATGCACGCTTCAAATTACCGACACAGCGGGGTCTCATCAGTTTCC]

[+] EMBL BI512636             [AATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTTATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCTTTATATTTTTAACAAAAATCACATTTGAATGCGGAATAGTATAGTTTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATACAAGATAAATTTATACTGAAGGGACCCCGGTTAGCGGGGGTTAACATCATCGGGACGGCAGATGTCAGAATGCCAGAGCAGAGCAACGATTACCGCGTGGTGGTGTTTGGAGCGGGTGGTGTTGGCAAGAGTTCTCTCGTATTGCGTTTCGTGAAAGGAACTTTTCGTGAATCCTATATACCTACTATCGAGGATACATATAGACAGGTGATAAGCTGCAATAAAAATATATGCACGCTTCAAATTACCGACACAGCGGGGTCTCATCAGTTTCC]




>consensus_997#1
AATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTT
ATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCT
TTATATTTTTAACAAAAATCACATTTGAATGCGGAATAGTATAGTTTACCGGAGATCTAA
GTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATACAAGATAAATTTATAC
TGAAGGGACCCCGGTTAGCGGGGGTTAACATCATCGGGACGGCAGATGTCAGAATGCCAG
AGCAGAGCAACGATTACCGCGTGGTGGTGTTTGGAGCGGGTGGTGTTGGCAAGAGTTCTC
TCGTATTGCGTTTCGTGAAAGGAACTTTTCGTGAATCCTATATACCTACTATCGAGGATA
CATATAGACAGGTGATAAGCTGCAATAAAAATATATGCACGCTTCAAATTACCGACACAG
CGGGGTCTCATCAGTTTCC

consensusID : consensus_997#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence

                              [TTAACACCAAATTATTGATTTACATTCTTTTTTTTTATCTTTATAATTTGTTAATATAATATTTAACTTCTATAATGAACTATTATTATCATTTTCTTAATGACATTGCGATGTTTGATCGCTGAAAAAAAATCGCCGACTTGATATAAATGCCACTTCATAATCCTCTTATGACCCGTAATCATCCCTCTACATGTGTATATATTCAACAAGTGATGTTTGAGACTCGAGACTCTTGTCATCGTTATCAAACAAGATTTTCACTAGAACATTCACATAAAGATCAATGATTATAATATTAAAACCAATTTAAGAAACTTTTATATCAATATTTGATTAATTGTTATCATTTCCATTATTTAATCATTTTCAAAATTGTTTAAAAAAAAA]

[+] EMBL BI504960             [TTAACACCAAATTATTGATTTACATTCTTTTTTTTTATCTTTATAATTTGTTAATATAATATTTAACTTCTATAATGAACTATTATTATCATTTTCTTAATGACATTGCGATGTTTGATCGCTGAAAAAAAATCGCCGACTTGATATAAATGCCACTTCATAATCCTCTTATGACCCGTAATCATCCCTCTACATGTGTATATATTCAACAAGTGATGTTTGAGACTCGAGACTCTTGTCATCGTTATCAAACAAGATTTTCACTAGAACATTCACATAAAGATCAATGATTATAATATTAAAACCAATTTAAGAAACTTTTATATCAATATTTGATTAATTGTTATCATTTCCATTATTTAATCATTTTCAAAATTGTTTAAAAAAAAA]




>consensus_997#2
TTAACACCAAATTATTGATTTACATTCTTTTTTTTTATCTTTATAATTTGTTAATATAAT
ATTTAACTTCTATAATGAACTATTATTATCATTTTCTTAATGACATTGCGATGTTTGATC
GCTGAAAAAAAATCGCCGACTTGATATAAATGCCACTTCATAATCCTCTTATGACCCGTA
ATCATCCCTCTACATGTGTATATATTCAACAAGTGATGTTTGAGACTCGAGACTCTTGTC
ATCGTTATCAAACAAGATTTTCACTAGAACATTCACATAAAGATCAATGATTATAATATT
AAAACCAATTTAAGAAACTTTTATATCAATATTTGATTAATTGTTATCATTTCCATTATT
TAATCATTTTCAAAATTGTTTAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_997#0      -ATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTT 59
consensus_997#1      AATATTGGATAGCAATTATCCGAACATTGACACGAAACGAACATTCTCAAGCCAATTGTT 60
consensus_997#2      --------------------------TTAACACCAAATTATTGATTTACATTCT-TTTTT 33
                                               ** **** ***  *    * *  *  *  ** **

consensus_997#0      ATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCT 119
consensus_997#1      ATTATCCTGATTCTTGAAAGGATTCACGTTACTTCTTCCTTTGGAGTGGAAGAAGATTCT 120
consensus_997#2      TTTATCTTTATAATTTG-----TTAATATAATATTTAACTTCTATAATGAACTATTATTA 88
                      ***** * **  **       ** *  * *  * *  ***       ***  *   *  

consensus_997#0      TTATATTTT-AACAAAAATC--ACATTTGAATGCGGTTTTTATCATTATTTTTTAAATTA 176
consensus_997#1      TTATATTTTTAACAAAAATC--ACATTTGAATGCGG------------------------ 154
consensus_997#2      TCATTTTCTTAATGACATTGCGATGTTTGATCGCTG------------------------ 124
                     * ** ** * **  * * *   *  *****  ** *                        

consensus_997#0      GAAAAGAAAAATTGAGAAGTGCATCGAGAAAATTAACATTTTTTTCAGGAATAGTATAGT 236
consensus_997#1      -------------------------------------------------AATAGTATAGT 165
consensus_997#2      ------------------------------------------------AAAAAAAATCGC 136
                                                                      ** *  ** * 

consensus_997#0      TTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATAC 296
consensus_997#1      TTACCGGAGATCTAAGTGACTTGAAGAAAAGAAAGCGCACGACAGTGTCGTCTGCTATAC 225
consensus_997#2      CGACTTGATATAAATGCCACTTCATAATCCTCTTATGACCCGTAAT--CATCC-CTCTAC 193
                       **  ** **  * *  **** *  *         *  *   * *  * **  ** ***

consensus_997#0      AAGGTTCACCAAATACTTTATTATCTGCAGACCTTCCGCATCATCGGGTCAATACGATCG 356
consensus_997#1      AAGAT-----AAAT---TTATACTGAAGGGACCCCGGTTAGCGG-GGGTTAACATCATCG 276
consensus_997#2      ATGTGT------ATA--TATTCAACAAGTGATGTTTGAGACTCG-AGACTCTTGTCATCG 244
                     * *         **   *  *        **        *      *         ****

consensus_997#0      AGAT--CTTATCATCTAATGCGTGA-CGCGTCGACATTTAAC-CGTGGTCGNNNTTCAGT 412
consensus_997#1      GGACGGCAGATGTCAGAATGCCAGAGCAGAGCAACGATTACCGCGTGGTGGTGTTT--GG 334
consensus_997#2      TTATCAAACAAGATTTT-CACTAGAACATTCACATAAAGATC-AATGATTATAATATTAA 302
                       *      *          *  ** *      *     * *   ** *     *     

consensus_997#0      AATCGGTTACGTATATTTTCAGAATATACCTCTGTTATGTGT--TTATACTGATTATT-- 468
consensus_997#1      AGCGGGTGGTGT---TGGCAAGAGTTCTCTCGTATTGCGTTTCGTGAAAGGAACTTTTCG 391
consensus_997#2      AACCAATTTAAGAAACTTTTATATCAATATTTGATTAATTGTTATCATTTCCATTATT-- 360
                     *     *             * *           **   * *  * *     * * **  

consensus_997#0      TAATTTTTATTTAATTTTTTTTAAACAATTTTGAAAATGATTAAATAATGGAAATGATAA 528
consensus_997#1      TGAATCCTATATACCTACTATCGAGGATACATATAGACAGGTGATAAGCTGCAATAAAAA 451
consensus_997#2      TAATCATTTTCAAAATTGTTTAAAAAAAAA------------------------------ 390
                     * *    * *  *  *  * *  *  *                                 

consensus_997#0      CAATTAA-----TCAAAT-ATTGANATAAAAGTTTCTTAAATTGGTT--- 569
consensus_997#1      TATATGCACGCTTCAAATTACCGACACAGCGGGGTCTC--ATCAGTTTCC 499
consensus_997#2      --------------------------------------------------

Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr)