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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1579 fasta sequence
[CGTCCGCGCGTGCATGTCGTTGCATTGCCACCACCGGACGGAGCAACGACGACCGGGCACCATCTCCGGCCGGCCGGGCACGGGCAGACATCGCCAGCTATCATCTGGCCATCGCCTACGGTGAGCAGTCATCGTCGTCCATCCGATCGAATCGCCCCTACTCCACGCGGGTGTCGCCGGCCGCCGCGGTTCGTGGTCCGCCATGAAGCCGGGATTGCTGAAGTCTCGGCGGAGCAGCGCCGGGGACGAGGAGGAGGGATCTGGCGGCAGCGGCGGCCTCCCCACGGCGACACGGAAGGAGTGGTGCTGGTCGTTGGGGATTCTCCTCAAGGCCGTGGCGGCGCTGCTGATCCTGATGGCCGGCGTGCTGATCGGCCTGGCCACCAGCGCGAGCCTGTCCTGCTACTACGTCGAGGGCAGCGGCAAGCAGGCGGAGGCGCGGCGCGGAGATGGAGGCGGCGGGGAAGGGGGGTCACGGTGTCGCGACGACGGGTGTGGCGCGGCGCTGAGCTTCCAGCGGTTCGTGCAACCGCACCCGCCATGGGGGCACTCGATGAAGGACGAGGAGCTGTTCTGGCGCGCGTCCATGGCGCCGCGCGTGGAGGAGTACCCGTACCAGCGCGTGCCCAAGGTGGCGTTCCTGTTCCTGACGCGCGGGCCGCTGCCGTTCGCGCCGCTGTGGGAGCGGTTTTTCCACGGGCACGAGGGGCTCTACTCCGTGTACGTGCACGCCCTGCCAGAGTACAGGCTGAACGTGTCGTCGTCGTCGCCGTTCCACGGCCGGCAGATCCCGAGCGGCGACGTGTCGTGGGGCTCCATCACGCTGGTGGACGCCGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGAGCGGTTCGTGCTCGCCTCCGAGAGCTGCGTGCCGGTGTTCAACTTCCCGACGGTGTACGAGTACCTGGTGAACTCGGCGCAGAGCTACGTGGAGTCGTACAACATCGACGTGCCGCAGTGCGCGGGGCGGTACAACCCGCGCATGGCGCCCGACGTGCTGGAGGAGCAGTGGCGGAAGGGGTCCGAGTGGTTCGAGATGAGCCGAGACCTCGCCGCCGACATCGTCGCCGACCGGAAGTACCATGCCATCTTCCGCAAGCACTGCACGCCGTCGTGCTACCCGGACGAGCACTACATCCCGACGTACCTGCACCTCCGCCACGGCGCGCGCAACGCCAACCGCACAGTCACCTGGGTGGACTGGTCGCGCGGCGGGCCGCACCCCGCGCGGTTCGGCAAGGCCACCGTCACGCCGGCGTTCGTGCAGGCCATCCGCAACAACGGGACGCGCTGCGCGTACAACGGCAAGCCCACCACCGTGTGCTACCTGTTCGCCCGCAAGTTCGCGCCCAGCGCGCTCGGGCCGCTGCTCAACATGTCCACCACGCTCCTCGAATTCTGACATTTTTTTTTTGTACTTCTCCGGTACTACTAGTAGTTTGTTAGCTGATCGATGGATGATTCCTTCCATGTAAATTTCTGTCTGTCATCCCGACTATCCTTAATTCTCCCAAATTTGCCTCAAAATGAATATACCTCA]
[+] EMBL AK121455 [CGTCCGCGCGTGCATGTCGTTGCATTGCCACCACCGGACGGAGCAACGACGACCGGGCACCATCTCCGGCCGGCCGGGCACGGGCAGACATCGCCAGCTATCATCTGGCCATCGCCTACGGTGAGCAGTCATCGTCGTCCATCCGATCGAATCGCCCCTACTCCACGCGGGTGTCGCCGGCCGCCGCGGTTCGTGGTCCGCCATGAAGCCGGGATTGCTGAAGTCTCGGCGGAGCAGCGCCGGGGACGAGGAGGAGGGATCTGGCGGCAGCGGCGGCCTCCCCACGGCGACACGGAAGGAGTGGTGCTGGTCGTTGGGGATTCTCCTCAAGGCCGTGGCGGCGCTGCTGATCCTGATGGCCGGCGTGCTGATCGGCCTGGCCACCAGCGCGAGCCTGTCCTGCTACTACGTCGAGGGCAGCGGCAAGCAGGCGGAGGCGCGGCGCGGAGATGGAGGCGGCGGGGAAGGGGGGTCACGGTGTCGCGACGACGGGTGTGGCGCGGCGCTGAGCTTCCAGCGGTTCGTGCAACCGCACCCGCCATGGGGGCACTCGATGAAGGACGAGGAGCTGTTCTGGCGCGCGTCCATGGCGCCGCGCGTGGAGGAGTACCCGTACCAGCGCGTGCCCAAGGTGGCGTTCCTGTTCCTGACGCGCGGGCCGCTGCCGTTCGCGCCGCTGTGGGAGCGGTTTTTCCACGGGCACGAGGGGCTCTACTCCGTGTACGTGCACGCCCTGCCAGAGTACAGGCTGAACGTGTCGTCGTCGTCGCCGTTCCACGGCCGGCAGATCCCGAGCGGCGACGTGTCGTGGGGCTCCATCACGCTGGTGGACGCCGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGAGCGGTTCGTGCTCGCCTCCGAGAGCTGCGTGCCGGTGTTCAACTTCCCGACGGTGTACGAGTACCTGGTGAACTCGGCGCAGAGCTACGTGGAGTCGTACAACATCGACGTGCCGCAGTGCGCGGGGCGGTACAACCCGCGCATGGCGCCCGACGTGCTGGAGGAGCAGTGGCGGAAGGGGTCCGAGTGGTTCGAGATGAGCCGAGACCTCGCCGCCGACATCGTCGCCGACCGGAAGTACCATGCCATCTTCCGCAAGCACTGCACGCCGTCGTGCTACCCGGACGAGCACTACATCCCGACGTACCTGCACCTCCGCCACGGCGCGCGCAACGCCAACCGCACAGTCACCTGGGTGGACTGGTCGCGCGGCGGGCCGCACCCCGCGCGGTTCGGCAAGGCCACCGTCACGCCGGCGTTCGTGCAGGCCATCCGCAACAACGGGACGCGCTGCGCGTACAACGGCAAGCCCACCACCGTGTGCTACCTGTTCGCCCGCAAGTTCGCGCCCAGCGCGCTCGGGCCGCTGCTCAACATGTCCACCACGCTCCTCGAATTCTGACATTTTTTTTTTGTACTTCTCCGGTACTACTAGTAGTTTGTTAGCTGATCGATGGATGATTCCTTCCATGTAAATTTCTGTCTGTCATCCCGACTATCCTTAATTCTCCCAAATTTGCCTCAAAATGAATATACCTCA]
consensusID : consensus_100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 737 fasta sequence
[GGGATCCATAACACTCATGGACGCCGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGATCGGTTCGTCCTCCTCTCCGAGAGCTGCATACCGGTGCAGAGCTTCCCGGTGGCGTACGGCTACCTCACCGGCTCGCGCCACAGCTTCGTGGAGGTCTACTACCACAAGGGCAAGACGTGCCGCGGCCGGTACAGCCGCCGCATGGAGCCGGACATCACGCTGCCGCAGTGGAGGAAGGGCTCCCAGTGGTTCGAGCTCAGGCGAGACCTCGCCGTGGCCGCCCTGACGGACGCCAGGTACTACCCGCTCTTCCGGCGGCACTGCCGGCCGTCGTGCTACCCCGACGAGCACTACCTCCCGACGTTCGTCGCCATGCTCCACGGCGCGGACAACTCGAACCGCACCGTGACGTACGTCGACTGGTCCAGAGGCGGCGCGCACCCGGCGACGTACACCGCCGGCGACGTCACGCCGGAGCTGATCCTGAGCATCAGGAGGAGCGAGGTGCCCTGCATGTACAACTCCCGGCCGACCACGGCGTGCTTCCTGTTCGCGAGGAAGTTCTCCGCCGACGCGCTGGAGCCGCTGCTCAACATCTCATCGACGGTGATGCAGTACTAGTTCTCCTCGCCGCCAACTATTGTTTGTAACATAGGATTTCACACAACATATTCAGGTACCAATTGTACCTGTCAAGCAAAAGGGGAAAAAGAAGAAGAAAGTGTTC]
[+] EMBL AK105949 [GGGATCCATAACACTCATGGACGCCGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGATCGGTTCGTCCTCCTCTCCGAGAGCTGCATACCGGTGCAGAGCTTCCCGGTGGCGTACGGCTACCTCACCGGCTCGCGCCACAGCTTCGTGGAGGTCTACTACCACAAGGGCAAGACGTGCCGCGGCCGGTACAGCCGCCGCATGGAGCCGGACATCACGCTGCCGCAGTGGAGGAAGGGCTCCCAGTGGTTCGAGCTCAGGCGAGACCTCGCCGTGGCCGCCCTGACGGACGCCAGGTACTACCCGCTCTTCCGGCGGCACTGCCGGCCGTCGTGCTACCCCGACGAGCACTACCTCCCGACGTTCGTCGCCATGCTCCACGGCGCGGACAACTCGAACCGCACCGTGACGTACGTCGACTGGTCCAGAGGCGGCGCGCACCCGGCGACGTACACCGCCGGCGACGTCACGCCGGAGCTGATCCTGAGCATCAGGAGGAGCGAGGTGCCCTGCATGTACAACTCCCGGCCGACCACGGCGTGCTTCCTGTTCGCGAGGAAGTTCTCCGCCGACGCGCTGGAGCCGCTGCTCAACATCTCATCGACGGTGATGCAGTACTAGTTCTCCTCGCCGCCAACTATTGTTTGTAACATAGGATTTCACACAACATATTCAGGTACCAATTGTACCTGTCAAGCAAAAGGGGAAAAAGAAGAAGAAAGTGTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_100#0 CGTCCGCGCGTGCATGTCGTTGCATTGCCACCACCGGACGGAGCAACGACGACCGGGCAC 60
consensus_100#1 ------------------------------------------------------------
consensus_100#0 CATCTCCGGCCGGCCGGGCACGGGCAGACATCGCCAGCTATCATCTGGCCATCGCCTACG 120
consensus_100#1 ------------------------------------------------------------
consensus_100#0 GTGAGCAGTCATCGTCGTCCATCCGATCGAATCGCCCCTACTCCACGCGGGTGTCGCCGG 180
consensus_100#1 ------------------------------------------------------------
consensus_100#0 CCGCCGCGGTTCGTGGTCCGCCATGAAGCCGGGATTGCTGAAGTCTCGGCGGAGCAGCGC 240
consensus_100#1 ------------------------------------------------------------
consensus_100#0 CGGGGACGAGGAGGAGGGATCTGGCGGCAGCGGCGGCCTCCCCACGGCGACACGGAAGGA 300
consensus_100#1 ------------------------------------------------------------
consensus_100#0 GTGGTGCTGGTCGTTGGGGATTCTCCTCAAGGCCGTGGCGGCGCTGCTGATCCTGATGGC 360
consensus_100#1 ------------------------------------------------------------
consensus_100#0 CGGCGTGCTGATCGGCCTGGCCACCAGCGCGAGCCTGTCCTGCTACTACGTCGAGGGCAG 420
consensus_100#1 ------------------------------------------------------------
consensus_100#0 CGGCAAGCAGGCGGAGGCGCGGCGCGGAGATGGAGGCGGCGGGGAAGGGGGGTCACGGTG 480
consensus_100#1 ------------------------------------------------------------
consensus_100#0 TCGCGACGACGGGTGTGGCGCGGCGCTGAGCTTCCAGCGGTTCGTGCAACCGCACCCGCC 540
consensus_100#1 ------------------------------------------------------------
consensus_100#0 ATGGGGGCACTCGATGAAGGACGAGGAGCTGTTCTGGCGCGCGTCCATGGCGCCGCGCGT 600
consensus_100#1 ------------------------------------------------------------
consensus_100#0 GGAGGAGTACCCGTACCAGCGCGTGCCCAAGGTGGCGTTCCTGTTCCTGACGCGCGGGCC 660
consensus_100#1 ------------------------------------------------------------
consensus_100#0 GCTGCCGTTCGCGCCGCTGTGGGAGCGGTTTTTCCACGGGCACGAGGGGCTCTACTCCGT 720
consensus_100#1 ------------------------------------------------------------
consensus_100#0 GTACGTGCACGCCCTGCCAGAGTACAGGCTGAACGTGTCGTCGTCGTCGCCGTTCCACGG 780
consensus_100#1 ------------------------------------------------------------
consensus_100#0 CCGGCAGATCCCGAGCGGCGACGTGTCGTGGGGCTCCATCACGCTGGTGGACGCCGAGAA 840
consensus_100#1 ------------------------------GGGATCCATAACACTCATGGACGCCGAGAA 30
*** ***** ** ** *************
consensus_100#0 GCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGAGCGGTTCGTGCTCGCCTCCGA 900
consensus_100#1 GCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAACGATCGGTTCGTCCTCCTCTCCGA 90
*************************************** ******** *** ******
consensus_100#0 GAGCTGCGTGCCGGTGTTCAACTTCCCGACGGTGTACGAGTACCTGGTGAACTCGGCGCA 960
consensus_100#1 GAGCTGCATACCGGTGCAGAGCTTCCCGGTGGCGTACGGCTACCTCACCGGCTCGCGCCA 150
******* * ****** * ******* ** ***** ***** **** **
consensus_100#0 GAGCTACGTGGAGTCGTACAACATCGACGTGCCGCAGTGCGCGGGGCGGTACAACCCGCG 1020
consensus_100#1 CAGCTTCGTGGAGGTCTACTACCACAAGGGCAAGACGTGCCGCGGCCGGTACAGCCGCCG 210
**** ******* *** ** * * * * **** ** ******* ** **
consensus_100#0 CATGGCGCCCGACGTGCTGGAGGAGCAGTGGCGGAAGGGGTCCGAGTGGTTCGAGATGAG 1080
consensus_100#1 CATGGAGCCGGACATCACGCTGCCGCAGTGGAGGAAGGGCTCCCAGTGGTTCGAGCTCAG 270
***** *** *** * * * ******* ******* *** *********** * **
consensus_100#0 CCGAGACCTCGCCGCCGACATCGTCGCCGACCGGAAGTACCATGCCATCTTCCGCAAGCA 1140
consensus_100#1 GCGAGACCTCGCCGTGGCCGCCCTGACGGACGCCAGGTACTACCCGCTCTTCCGGCGGCA 330
************* * * * * * *** * **** * * ******* ***
consensus_100#0 CTGCACGCCGTCGTGCTACCCGGACGAGCACTACATCCCGACGTACCTGCACCTCCGCCA 1200
consensus_100#1 CTGCCGGCCGTCGTGCTACCCCGACGAGCACTACCTCCCGACGTTCGTCGCCATGCTCCA 390
**** *************** ************ ********* * * * * * ***
consensus_100#0 CGGCGCGCGCAACGCCAACCGCACAGTCACCTGGGTGGACTGGTCGCGCGGCGGGCCGCA 1260
consensus_100#1 CGGCGCGGACAACTCGAACCGCACCGTGACGTACGTCGACTGGTCCAGAGGCGGCGCGCA 450
******* **** * ******** ** ** * ** ******** * ***** ****
consensus_100#0 CCCCGCGCGGTTCGGCAAGGCCACCGTCACGCCGGCGTTCGTGCAGGCCATCCGCAACAA 1320
consensus_100#1 CCCGGCGACGTACACCGCCGGCGACGTCACGCCGGAGCTGATCCTGAGCATCAGGAGGAG 510
*** *** ** * * * * *********** * * * * * **** * * *
consensus_100#0 CGGGACGCGCTGCGCGTACAACGGCAAGCCCACCACCGTGTGCTACCTGTTCGCCCGCAA 1380
consensus_100#1 CGAGGTGCCCTGCATGTACAACTCCCGGCCGACCACGGCGTGCTTCCTGTTCGCGAGGAA 570
** * ** **** ******* * *** ***** * ***** ********* * **
consensus_100#0 GTTCGCGCCCAGCGCGCTCGGGCCGCTGCTCAACATGTCCACCACGCTCCTCGAATTCTG 1440
consensus_100#1 GTTCTCCGCCGACGCGCTGGAGCCGCTGCTCAACATCTCATCGACGGTGATGCAGTACTA 630
**** * ** ****** * *************** ** * *** * * * * **
consensus_100#0 ACATTTTTTTTTTGTACTTCTCCGGTACTACTAGTAGTTTGTTAGCTGATCGATGGATGA 1500
consensus_100#1 G----TTCTCCTCGC---CGCCAACTATTGTTTGTAACATAGGATTTCAC------ACAA 677
** * * * * ** * * *** * * * * * *
consensus_100#0 TTCCTTCCATGTAAATTTCTGTCTGTCATCCCGACTATCCTTAATTCTCCCAAATTTGCC 1560
consensus_100#1 CATATTCAGGTACCAATTGTACCTGTCAAGCAAAAGGGGAAAAAGAAGAAGAAAGTGTTC 737
*** * ** * ****** * * ** *** * *
consensus_100#0 TCAAAATGAATATACCTCA 1579
consensus_100#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||