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Oryza sativa
cluster # 1000 cluster # 1000       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1000#0 length = 738 sequences # 1  
consensus_1000#1 length = 481 sequences # 1  

consensusID : consensus_1000#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 738
fasta sequence
                              [CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGATACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTATCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTTCGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCGGCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCACCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAGGATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTGGAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGTGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAACCACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCAT]

[+] EMBL CB646085             [CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGATACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTATCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTTCGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCGGCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCACCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAGGATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTGGAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGTGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAACCACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCAT]


>consensus_1000#0 CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGAT ACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTA TCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTT CGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCG GCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCA CCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAG GATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGC CCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTG GAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCG CAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTG TGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAAC CACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCAC CCACAACTGTCGGGGCAT



consensusID : consensus_1000#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 481
fasta sequence
                              [ATACGCTACGTAACGGCATGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAGCCCAGTCCACGGGAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGGGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATCCACCGAACCAACCACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGCC]

[+] EMBL CF277113             [ATACGCTACGTAACGGCATGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAGCCCAGTCCACGGGAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCGCAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTGGGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATCCACCGAACCAACCACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCACCCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGCC]


>consensus_1000#1 ATACGCTACGTAACGGCATGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTT TCCAAGGTTAGCCCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAG CCCAGTCCACGGGAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGA ACATCCTATCCGCAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAA ACGGCGCTGCTGGGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATC CACCGAACCAACCACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGG AAATCGCGCCACCCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGC C



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1000#0      CCTTTAAAGTTTTTTTTGGGAGAGACTAATTTTGATTCATTCCTTAACTAGAATGACGAT 60
consensus_1000#1      ------------------------------------------------------------
                                                                                  

consensus_1000#0      ACAATCCATCCTTATATAGATGGAGGAAGGACCCAGTCTAATCTTATCCAACCGACTCTA 120
consensus_1000#1      ------------------------------------------------------------
                                                                                  

consensus_1000#0      TCCTTATCCCTAGGGCCTCGACCTCTCGGCCTACTACCTATGACACTACATCCCTCCTTT 180
consensus_1000#1      ------------------------------------------------------------
                                                                                  

consensus_1000#0      CGAGCAGCTCATACGACTTTCTAAATAAAACCTAACATAACTTAAGCCTTTTACATCTCG 240
consensus_1000#1      ------------------------------------------------------------
                                                                                  

consensus_1000#0      GCTTGTTACTTTATTGCAAAAAATTGAAAGGGTAAATAAATCAAAGATTATGATGCACCA 300
consensus_1000#1      ------------------------------------------ATACGCTACGTAACGGCA 18
                                                                * *   ** *   *  **

consensus_1000#0      CCATACTATCTCGCTGATAACACATGCAGGTGGACCCCATCCAAAAGCTTTGAGAGAAAG 360
consensus_1000#1      TGACATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT------TTT 72
                        * * *   *   *  *      *     *        *        ***         

consensus_1000#0      GATAAGTCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGC 420
consensus_1000#1      TTTAAGCCCACAGCACGTTGCAAGCTTGATTGCATATCTGATCTGTTTTCCAAGGTTAGC 132
                        **** *****************************************************

consensus_1000#0      CCCACCTGGCCAACACAACAGCCAAGACATGGGCTGCCACACTTGAAGCCCAGTCCACTG 480
consensus_1000#1      CCCACCTGGCCAACACAACAGCCAAAACATGGGCTGCCACACTTTAAGCCCAGTCCACGG 192
                      ************************* ****************** ************* *

consensus_1000#0      GAACAGCCCAAAAGAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCG 540
consensus_1000#1      GAACAGCCCAAAAAAAAGGTTATGTTGGCCCATTAAAAACAGAGGCGAACATCCTATCCG 252
                      ************* **********************************************

consensus_1000#0      CAGCTCCTCTCTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTG 600
consensus_1000#1      CAGCTCCTTTTTGCCGCAGCGCAGCCAATCGACGATGACACGGTAAAAACGGCGCTGCTG 312
                      ******** * *************************************************

consensus_1000#0      TGCTTCCTTCTTATCCAAGCCGCGAACACCGCGCGGGCGCCGGCCATCCACCGCACCAAC 660
consensus_1000#1      GGCTTCCTTTTTATCCAAGCCGGGAACACCGCGCGGGCGCCGGCCATCCACCGAACCAAC 372
                       ******** ************ ****************************** ******

consensus_1000#0      CACCGCCGCCGAAATCAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCAC 720
consensus_1000#1      CACCGGCGCCGAAATAAGCTCCGAAGCTGCCGCATCATGATCTCGCGGAAATCGCGCCAC 432
                      ***** ********* ********************************************

consensus_1000#0      CCACAACTGTCGGGGCAT------------------------------- 738
consensus_1000#1      CCACAACTGTCGGGGCATGAGGGCATTTCCCGTAAGCTCAAATCGAGCC 481
                      ******************                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)