Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10002 cluster # 10002       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10002#0 length = 1242 sequences # 6  
consensus_10002#1 length = 444 sequences # 1  

consensusID : consensus_10002#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1242
fasta sequence
                              [GCGTCCGCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAGCGGCG-AGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTTCTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGAGGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGAGGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCATCATCACAGATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTTTTTTTATTTCCTGGATCAAGTTCACCATGTTGTGCTCAAGATTTGTGGATAAATGCACATCCATCC]

[+] EMBL AB028182             [GCGTCCGCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAGCGGCG AGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTTCTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGAGGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGAGGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCAaaaaa                                                                                                          ]
[+] EMBL AK073667             [      aCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAGCGGCG AGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTTCTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGAGGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGAGGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCATCATCACAGATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTTTTTTTATTTCCTGGATCAAGTTCACCATGTTGTGCTCAAGATTTGTGGATAAATGCACATCCATCC]
[+] EMBL C26682               [               CCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAG GGCG AGTGCGCGACG GGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCG GGCCNGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCAACCCGCGCGACCGAAAGTAACCCAACGGCTTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSC101541            [                CTCATTCCCTCAAGTCCCAAGATCGAACANCTCGTGTCCATGGCGGCGGCGAAG GGCGAAGTGCGCGACG GGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTNGTGGCGCACTACCTCTGCCCGCGCGCCNNGGNCAGCGCCGCCCCGGTCCCCATNATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCNCCACCGCGACCTCTTAGGNCGACGCGAGTGGTACTTCTTCACCCNGCGCGACCGAAAGTACCCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB000137             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   gGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCCCTTCG AAATCTTCTGAGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCTGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCGGGCAAGGTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCGGTATGATATGC                                                                                                                                                                                                          ]
[+] EMBL CA999705             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGGTACTCATCATCACAGATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTT                                                                  ]


>consensus_10002#0 GCGTCCGCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGC GGCGGCGAAGCGGCGAGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCG CTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCG CGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCT CCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAA GTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGG CGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTT CTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCT CGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTG GGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGA GGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGA GGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGA CGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCT CGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCC GCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACAT GTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGC TTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAG ATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCATCATCACAG ATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTTTTTTTATTTCCTGGATCAAGTTCA CCATGTTGTGCTCAAGATTTGTGGATAAATGCACATCCATCC



consensusID : consensus_10002#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence
                              [CGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTNGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAANACGGANCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCNCTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTAAAAAAAAAAAAAAA]

[+] EMBL AU181405             [CGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTNGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAANACGGANCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCNCTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTAAAAAAAAAAAAAAA]


>consensus_10002#1 CGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTNGACGACGCCCTGCTGCCCAAGGAGG AGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCT CGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAANACGGANC CGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGA CTGCACCNCTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGG CAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATGCAGGTT AGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAAT TAATGTAGTAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10002#0      GCGTCCGCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGC 60
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      GGCGGCGAAGCGGCGAGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCG 120
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      CTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCG 180
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      CGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCT 240
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      CCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAA 300
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      GTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGG 360
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      CGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTT 420
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      CTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCT 480
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      CGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTG 540
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      GGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGA 600
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      GGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGA 660
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      GGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGA 720
consensus_10002#1      -----------------------CGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTNGA 37
                                              ********************************** **

consensus_10002#0      CGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCT 780
consensus_10002#1      CGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCT 97
                       ************************************************************

consensus_10002#0      CGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCC 840
consensus_10002#1      CGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCC 157
                       ************************************************************

consensus_10002#0      GCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTC 900
consensus_10002#1      GCCGCCGGCGGCGAANACGGANCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTC 217
                       *************** ***** **************************************

consensus_10002#0      TCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACAT 960
consensus_10002#1      TCTCTCTCTCTCTCTCTCTGTGACTGCACCNCTGTATATAAATTCAGAGTTTTCAGACAT 277
                       ****************************** *****************************

consensus_10002#0      GTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGC 1020
consensus_10002#1      GTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGC 337
                       ************************************************************

consensus_10002#0      TTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAG 1080
consensus_10002#1      TTATGAGCAGTATGA--TGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAG 395
                       ***************  *******************************************

consensus_10002#0      ATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCATCATCACAG 1140
consensus_10002#1      ATTTGATTAATGATTTGATTCTAATTAATGTAGTAAAAAAAAAAAAAAA----------- 444
                       *********************************** *   *     *             

consensus_10002#0      ATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTTTTTTTATTTCCTGGATCAAGTTCA 1200
consensus_10002#1      ------------------------------------------------------------
                                                                                   

consensus_10002#0      CCATGTTGTGCTCAAGATTTGTGGATAAATGCACATCCATCC 1242
consensus_10002#1      ------------------------------------------
                                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)