These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10002#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1242 fasta sequence [GCGTCCGCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAGCGGCG-AGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTTCTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGAGGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGAGGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCATCATCACAGATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTTTTTTTATTTCCTGGATCAAGTTCACCATGTTGTGCTCAAGATTTGTGGATAAATGCACATCCATCC] [+] EMBL AB028182 [GCGTCCGCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAGCGGCG AGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTTCTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGAGGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGAGGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCAaaaaa ] [+] EMBL AK073667 [ aCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAGCGGCG AGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAAGTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGGCGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTTCTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCTCGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTGGGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGAGGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGAGGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCATCATCACAGATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTTTTTTTATTTCCTGGATCAAGTTCACCATGTTGTGCTCAAGATTTGTGGATAAATGCACATCCATCC] [+] EMBL C26682 [ CCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGCGGCGGCGAAG GGCG AGTGCGCGACG GGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCG GGCCNGCGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCAACCCGCGCGACCGAAAGTAACCCAACGGCTTCCG ] [+] EMBL OSC101541 [ CTCATTCCCTCAAGTCCCAAGATCGAACANCTCGTGTCCATGGCGGCGGCGAAG GGCGAAGTGCGCGACG GGAGGCGGACCTGAACCTCCCGCCGGGCTTCCGCTTCCACCCCACCGACGAGGAGCTNGTGGCGCACTACCTCTGCCCGCGCGCCNNGGNCAGCGCCGCCCCGGTCCCCATNATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCTCCNCCACCGCGACCTCTTAGGNCGACGCGAGTGGTACTTCTTCACCCNGCGCGACCGAAAGTACCCCAA ] [+] EMBL CB000137 [ gGCGCCGCCGCCGGCGGCGAAGACGGAGCCGCTCCCTTCG AAATCTTCTGAGCTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCTGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCGGGCAAGGTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCGGTATGATATGC ] [+] EMBL CA999705 [ GCCGCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGGTACTCATCATCACAGATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTT ] consensusID : consensus_10002#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [CGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTNGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAANACGGANCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCNCTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTAAAAAAAAAAAAAAA] [+] EMBL AU181405 [CGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTNGACGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCTCGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCCGCCGCCGGCGGCGAANACGGANCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGACTGCACCNCTGTATATAAATTCAGAGTTTTCAGACATGTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGCTTATGAGCAGTATGATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAGATTTGATTAATGATTTGATTCTAATTAATGTAGTAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10002#0 GCGTCCGCCCACCACCCTCATTCCCTCAAGTCCCAAGATCGAACACCTCGTGTCCATGGC 60 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 GGCGGCGAAGCGGCGAGTGCGCGACGCGGAGGCGGACCTGAACCTCCCGCCGGGCTTCCG 120 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 CTTCCACCCCACCGACGAGGAGCTGGTGGCGCACTACCTCTGCCCGCGCGCCGCGGGCCG 180 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 CGCCGCCCCGGTCCCCATCATCGCCGAGCTCGACCTCTACCGCCACGACCCATGGGACCT 240 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 CCCCCACCGCGCCCTCTTCGGCCGCCGCGAGTGGTACTTCTTCACCCCGCGCGACCGCAA 300 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 GTACCCCAACGGCTCCCGCCCCAACCGCGCCGCCGCCTCGGGCTACTGGAAGGCCACCGG 360 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 CGCCGACAAGCCCGTGCTGCACAACGGCAGGACGGCCGGGATCAAGAAGGCGCTCGTGTT 420 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 CTACCACGGCAAGCCCCCCCGCGGCGTCAAGACGGAGTGGATCATGCACGAGTACCGCCT 480 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 CGCCAAGAAGGGCGGCGCCGCCGCCGCCGCGGGCGCGGGCGCGCTCAGGCTGGATGACTG 540 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 GGTGCTGTGCCGGCTGTACAACAAGAAGAACGAGTGGGAGAAGATGCAGAGCAGGAAGGA 600 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 GGAGGAGGAGGCCATGGCGGCGGCGCAGTCGTGGGGGGAGACGCGGACGCCGGAGTCGGA 660 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 GGTCGTCGACAGCGACGCGTTCCCGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTCGA 720 consensus_10002#1 -----------------------CGGAGATGGACTACTCGCTGCCGGCGGCGTCGTTNGA 37 ********************************** ** consensus_10002#0 CGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCT 780 consensus_10002#1 CGACGCCCTGCTGCCCAAGGAGGAGGCGCGCGACGACGACTGGCTCATGGGGATGAGCCT 97 ************************************************************ consensus_10002#0 CGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCC 840 consensus_10002#1 CGACGACCTCCAGGGCCTCGGCTCGCTGCTGCAGGCCGACGACCTCTCCATGCTCGCGCC 157 ************************************************************ consensus_10002#0 GCCGCCGGCGGCGAAGACGGAGCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTC 900 consensus_10002#1 GCCGCCGGCGGCGAANACGGANCCGCTCGGCGCGCCATTCTTCTGAGCTCTCTCTCTCTC 217 *************** ***** ************************************** consensus_10002#0 TCTCTCTCTCTCTCTCTCTGTGACTGCACCACTGTATATAAATTCAGAGTTTTCAGACAT 960 consensus_10002#1 TCTCTCTCTCTCTCTCTCTGTGACTGCACCNCTGTATATAAATTCAGAGTTTTCAGACAT 277 ****************************** ***************************** consensus_10002#0 GTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGC 1020 consensus_10002#1 GTTCAGTATTCAGAGTTCTCAGGCAAGTTCAGAATTCAGAGATGGTTAAGGATTAGTGGC 337 ************************************************************ consensus_10002#0 TTATGAGCAGTATGATATGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAG 1080 consensus_10002#1 TTATGAGCAGTATGA--TGCAGGTTAGTTTCTAGTTTAGCAGTGTTACTCCAGATTGGAG 395 *************** ******************************************* consensus_10002#0 ATTTGATTAATGATTTGATTCTAATTAATGTAGTATACTGAGTGTTACTCATCATCACAG 1140 consensus_10002#1 ATTTGATTAATGATTTGATTCTAATTAATGTAGTAAAAAAAAAAAAAAA----------- 444 *********************************** * * * consensus_10002#0 ATTCATCAGAGCTGTGTCAAGTGACAATTCTTTTTTTTTTTATTTCCTGGATCAAGTTCA 1200 consensus_10002#1 ------------------------------------------------------------ consensus_10002#0 CCATGTTGTGCTCAAGATTTGTGGATAAATGCACATCCATCC 1242 consensus_10002#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||