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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1742 fasta sequence
[CGAGTTACAGCTAATAAACCGCGGTCTCCATCCTCGCAGGCGCAGGCGGGAGCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCCGCCGCGGCCGGCCGCGGCGACCTCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGATCCCTTCCCCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTTTTGGCAAAAAAAAAAAAAAAGA]
[+] EMBL AK069637 [CGAGTTACAGCTAATAAACCGCGGTCTCCATCCTCGCAGGCGCAGGCGGGAGCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCCGCCGCGGCCGGCCGCGGCGACCTCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGATCCCTTCCCCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTT ]
[+] EMBL CB672493 [ CGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCNATCTGAAAGCACCAGTACTTCCCAGAGG ]
[-] EMBL CB672494 [ CACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTTTTGGCAAAAAAAAAAAAAAAGA]
consensusID : consensus_10009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1695 fasta sequence
[GCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCCGCCGCGGCCGGCCGCGGCGACCTCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGATCCCTTCCCCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTGAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTTTTGGCAATGCATATCTATCGTTCTGT]
[+] EMBL AK100453 [GCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCCGCCGCGGCCGGCCGCGGCGACCTCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGATCCCTTCCCCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTGAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTTTTGGCAATGCATATCTATCGTTCTGT]
consensusID : consensus_10009#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence
[AGTTGGGCAGAGAGGTCCCCCGGTAGCGTTTCGCTGGCTCCCCCCTGCCGCGTCTCTCGCTGGGCCGTGCCGCCCGTATGTTGGGCGCCGCAGCCGCAGCCGTGCCCGACCCGCGAGACCCGGCGACCGTCTCCTCGCATGTCCTCTCCTGTGACCAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAGTGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTNTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGGAGCATCAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGTGAGAAGAGTATGGAGCCATGCCGATTAATCTTTTGGAGATTGTAGT]
[+] EMBL BE040876 [AGTTGGGCAGAGAGGTCCCCCGGTAGCGTTTCGCTGGCTCCCCCCTGCCGCGTCTCTCGCTGGGCCGTGCCGCCCGTATGTTGGGCGCCGCAGCCGCAGCCGTGCCCGACCCGCGAGACCCGGCGACCGTCTCCTCGCATGTCCTCTCCTGTGACCAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGGTTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAGTGAAACTCATGACATCAGTGCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACTGAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTNTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGGAGCATCAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTTCTTGTGAGAAGAGTATGGAGCCATGCCGATTAATCTTTTGGAGATTGTAGT]
consensusID : consensus_10009#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence
[TGTCTATGTGGAGACACTCGTGACCNCCATCGATTTGTCATTTCTCCCACTGTGGTCACTTAGTCTGATCTTGGAAGATATTTGGATAAAGTGACCGTTCCCTTTGCTAGAACACATCCCTTCTCAGTGAAACTTATTTGAATGCCAACCACTTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCCTTGTACACGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACCAATGGTCTGGAACCTTTCTTATTATTGAGACTTGGAAGGGCCCATGTGTCCCTTTAGCAAGCTTTTTTGCAATGCATATCTATCGTTCTGTTTTTTTTTTCTTTTAACTCCAGTTTTAATAGGATCTCTTCTTGTGTTAATATTTACCTTTTGGCNCGATAAAGCTTATATCTTACCAGAAAAAAAAAA]
[+] EMBL BM418946 [TGTCTATGTGGAGACACTCGTGACCNCCATCGATTTGTCATTTCTCCCACTGTGGTCACTTAGTCTGATCTTGGAAGATATTTGGATAAAGTGACCGTTCCCTTTGCTAGAACACATCCCTTCTCAGTGAAACTTATTTGAATGCCAACCACTTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCCTTGTACACGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACCAATGGTCTGGAACCTTTCTTATTATTGAGACTTGGAAGGGCCCATGTGTCCCTTTAGCAAGCTTTTTTGCAATGCATATCTATCGTTCTGTTTTTTTTTTCTTTTAACTCCAGTTTTAATAGGATCTCTTCTTGTGTTAATATTTACCTTTTGGCNCGATAAAGCTTATATCTTACCAGAAAAAAAAAA]
consensusID : consensus_10009#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 169 fasta sequence
[CTCCTCGCATGTCCTCTCCTGTGACCGCGCAGGGCAGCAGCAAGCTGGGGGCGCGCGCGAGGCGCTGCTACACCCGCCGCCCGCGCCGGCCGCCGACCTCGCCCCGATGGTCGGATGTACCAGCAGCAGCTCGTCGAAGACCCTTCCCCTGAGCGCGCTACTGCAGTGA]
[+] EMBL OSU60300 [CTCCTCGCATGTCCTCTCCTGTGACCGCGCAGGGCAGCAGCAAGCTGGGGGCGCGCGCGAGGCGCTGCTACACCCGCCGCCCGCGCCGGCCGCCGACCTCGCCCCGATGGTCGGATGTACCAGCAGCAGCTCGTCGAAGACCCTTCCCCTGAGCGCGCTACTGCAGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10009#0 ------------------------------------------------------------
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 GCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCCGCCGCGGCCGGCC 60
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ------------------------------------------------------------
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 GCGGCGACCTCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTCGTCGAAGATCCCTTCC 120
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ------------------------------------------------------------
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 CCCTGAGCGGCGGCTACTGCAGTGACCAGCCACGGCACGCGCCCGCCTCCGCCTCCACCT 180
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ------------------------------------------------------------
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 CCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCGCTGGCGCAGGCGCATGGAG 240
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ------------------------------------------------------------
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 CCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAGATCCTGCTCCCGCTCCGCG 300
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ------------------------------------------------------------
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 -----------------------------------------------------------A 1
consensus_10009#1 GCGAGGGAGGTGCCAACGGCGGCGGCGTCGGCCGCGGTCCCGGCGGGGTTGGGGATCTGG 360
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ------------CGAGTTACAGCTAATAAACCGCG-GTCTCCAT---CCTCGCAGG-CGC 43
consensus_10009#4 ----------------------------CTCCTCGCATGTCCTC---TCCTGTGAC-CGC 28
consensus_10009#2 GTTGGGCAGAGAGGTCCCCCGGTAGCGTTTCGCTGGCTCCCCCC---TGCCGCGTCTCTC 58
consensus_10009#1 GGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCCCGTGG--CGGCGCGGCCTGT 418
consensus_10009#3 ------------TGTCTATGTGGAGACACTCGTGACCNCCATCGATTTGTCATTTCTCCC 48
*
consensus_10009#0 AGGCG-----GGAGCAGCAAGCTGGGGGCGCGCGGCGAGGCGGCTGCTACACCCGCCGCC 98
consensus_10009#4 GCAGG-----GCAGCAGCAAGCTGGGGGCGCGCG-CGAGGCG-CTGCTACACCCGCCGC- 80
consensus_10009#2 GCTGG-----GCCGTGCCGCCCGTATGTTGGGCGCCGCAGCCGCAGCCGTGCCCGAC--- 110
consensus_10009#1 TCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTTACGGC-GCGCTCGCTACC 477
consensus_10009#3 ACTGTGGTCACTTAGTCTGATCTTGGAAGATATTTGGATAAAGTGACCGTTCCCTTTGCT 108
* * * *
consensus_10009#0 GCCGCGG--CCGGCCGCGGCGACC-TCGCCCCGATGGTCGGGATGTACCAGCAGCAGCTC 155
consensus_10009#4 -CCGCG---CCGGCCGC--CGACC-TCGCCCCGATGGTCGG-ATGTACCAGCAGCAGCTC 132
consensus_10009#2 -CCGCG-----AGACCCGGCGACCGTCTCCTCGCATGTCCTCTCCTGTGACCAAAAGGAA 164
consensus_10009#1 TCAGGATG-GAGGACGTTGCGAACGCGGACGAGCTACCCAGCTTCT-TCAAGAAAAGGAA 535
consensus_10009#3 AGAACACATCCCTTCTCAGTGAAACTTATTTGAATGCCAACCACTTCTCAATGTCTGTCT 168
* ** * * *
consensus_10009#0 GTCGAAGATCCCTTCCCCCTGAGC-GGCGGCTACTGCAGT--GACCAGCCACGGCACGCG 212
consensus_10009#4 GTCGAAGACCCTT--CCCCTGAGC-G--CGCTACTGCAGT--GA---------------- 169
consensus_10009#2 GTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGT--AAAGGTTCGATGAATATG 222
consensus_10009#1 GTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGT--GAAGGTTCGATGAATATG 593
consensus_10009#3 CAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTTCCCCTTGTA 228
* * * * * *
consensus_10009#0 CCCGCCTCCGCCTCCACCTCCACCTCCACATCCTCGTCAGCTGCCGTTGCAGCCTCGCCG 272
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 CCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAGTGAAACTCATGACATCAGTGCTCCTC 282
consensus_10009#1 CCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGACATCAGTGCTCCTC 653
consensus_10009#3 CACGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACCAATGGTCTGGAACCTTTC 288
consensus_10009#0 CTGGCGCAGGCGCATGGAGCCGGCGAGCCACGGCGGCTGTTCGAGGCGTTCATGGGGGAG 332
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACT 342
consensus_10009#1 ACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGGTACCTGACTGGACT 713
consensus_10009#3 TTATTATTGAGACTTGGAAGGGCCCATGTGTCCCTTTAGCAAGCTTTTTTGCAATGCATA 348
consensus_10009#0 ATCCTGCTCCCGCTCCGCGGCGAGGGAGGTGCCAACGGCGGCGGCGTCGGC-CGCGGTCC 391
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 GAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCA-AAGATGCT 401
consensus_10009#1 GAACCACCTTCAGATGAACTTGCTCGTTACAAAAATGACCCAAACATCTCA-AAGATGCT 772
consensus_10009#3 TCTATCGTTCTGTTTTTTTTTTCTTTTAACTCCAGTTTTAATAGGATCTCTTCTTGTGTT 408
consensus_10009#0 CGGCGGGGTTGGGGATCTGGGGGAGTTGCTGCGGTGGACGCGGGAGGTCGCCGCGAATCC 451
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 AGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGG 461
consensus_10009#1 AGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTGATAAAAAAATAGCTGG 832
consensus_10009#3 AATATTTACCTTTTGGCNCGATAAAGCTTATATCTTACCAGAAAAAAAAAA--------- 459
consensus_10009#0 CGTGGCGGCGCGGCCTGTTCCGGCGGAGGTCAAGGCGAGGAAGCGGCAGGTGCTGGCCTT 511
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 CCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCA 521
consensus_10009#1 CCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCTTCTTCTGCAGACAGCA 892
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ACGGCGCGCTCGCTACCTCAGGATGGAGGACGTTGCGAACGCGGACGAGCTACCCAGCTT 571
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 TCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTNTCACAGAATG 581
consensus_10009#1 TCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTAGAGCTTTCACAGAATG 952
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 CTTCAAGAAAAGGAAGTACAGATCTCACAATAACCATGCAGAAAGACAAAAAGGTAAAGG 631
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 GCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAA 641
consensus_10009#1 GCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTCGTGAGGAGCAACTAAA 1012
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 TTCGATGAATATGCCAACAAGGAAATCAGAGAGGCTAGCTAAGAGAATGAAACTCATGAC 691
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 GTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGGAGC 701
consensus_10009#1 GTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGACTTTTTGGGCGGTAGC 1072
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ATCAGT-GCTCCTCACACAAAGGAAAAAGATTGGAGTTGGTGAGCATTTTCAGGCAGAGG 750
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ATCAAA-CATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTT 760
consensus_10009#1 ATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTTATTACTTGAACGTTTT 1132
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 TACC-TGACTGGACTGAACCACCT-TCAGATGAAC-TTGCTCGTTACAAAAATGACCCAA 807
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 CTTG-TGAGAAGAGTATGGAGCCA-TGCCGATTAA-TCTTTTGGAGATTGTAGT------ 811
consensus_10009#1 CTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGGAGATTGATAGTGATGA 1192
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ACATCTCAAAGATGCTAGGAACCAGAATTTGGCCACCTGAAGGTCAAGTTCTACAAACTG 867
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 AGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCACCAGTACTTCCCAGAG 1252
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ATAAAAAAATAGCTGGCCAGGGAAGGATGGAATCATGTAACTGTTCATACCCGGGATCCT 927
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 GACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCTGACAGCTACCTGTCCA 1312
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 TCTTCTGCAGACAGCATCACACAGATGCAGCCAGAGATCAGCTAAGGTGTGAACTCGGTA 987
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 CATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTGACCTCAATCGATTTGT 1372
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 GAGCTTTCACAGAATGGCGATTTGATTCAATGGGTGAGGAGGTTTCTAAAATGTGGACTC 1047
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 CATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGGATAAAGTGAGTCGTTC 1432
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 GTGAGGAGCAACTAAAGTTTAATGCACTTGAGAGGTTGGTCCCTGTGATGGACCATAAGA 1107
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 ACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAATGGCAGACCATTCTCAA 1492
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 CTTTTTGGGCGGTAGCATCAAAACATCTTGCCTCAAAGACCAGGATAGAGTTGGTGCGTT 1167
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 TGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTATCTGATCTGAATTGTTT 1552
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ATTACTTGAACGTTTTCTTGATGAGAAGAGTATTGAGCCAATGCAGATTAAATCTTTTGG 1227
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 CCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAGAAAACAAATGGTCTGG 1612
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 AGATTGATAGTGATGAAGATGAAACAGAGGAAGAGGAGGATGAAGATCAATCTGAAAGCA 1287
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 AACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCTTTAGCAAGCTTTTTTG 1672
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 CCAGTACTTCCCAGAGGACCCAGCATGCCCAGAATGTGAAGAGCATTTCATGAAATGGCT 1347
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 GCAATGCATATCTATCGTTCTGT------------------------------------- 1695
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 GACAGCTACCTGTCCACATTCTTTTTTGCATGTGCACTTGTTTTGTCTATGTGGAGAGTG 1407
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 ------------------------------------------------------------
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ACCTCAATCGATTTGTCATTTCTCCATGTGGTCATTAGTCTGATCTTGGAAGATATTTGG 1467
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 ------------------------------------------------------------
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 ATAAAGTGAGTCGTTCACTTTGCTAGAACACATCCATTCTGCAGAGAAACTTATTTGAAT 1527
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 ------------------------------------------------------------
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 GGCAGACCATTCTCAATGTCTGTCTCAAGACAATCCATTCGGTTGTAACTCGAAGATTAT 1587
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 ------------------------------------------------------------
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 CTGATCTGAATTGTTTCCCATTGTACAGGAAAAGAAAAGGAAAAGTAGATTGGGGGAAAG 1647
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 ------------------------------------------------------------
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 AAAACAAATGGTCTGGAACATTTCTTATTATTGAGACTTGGAAGGGCCAATGTGTCGCCT 1707
consensus_10009#4 ------------------------------------------------------------
consensus_10009#2 ------------------------------------------------------------
consensus_10009#1 ------------------------------------------------------------
consensus_10009#3 ------------------------------------------------------------
consensus_10009#0 TTAGCAAGCTTTTTTGGCAAAAAAAAAAAAAAAGA 1742
consensus_10009#4 -----------------------------------
consensus_10009#2 -----------------------------------
consensus_10009#1 -----------------------------------
consensus_10009#3 -----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||