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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10010#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1264 fasta sequence
[TTTGGGAGTAAGCTTTACCAGGAGCAGTGCGATGGATTCCAGCAGCGCCGAGATCCTCATCGACCTCGGTGGCTTCCGGCTATACAAAGATGGCCACGCCGACCGTGCCGGCGGCATGGAGAGTGTGCCTGCCGGCTACGACGACGAGACCGGCGTCACGTCCAAGGACGTCGTCATCGACGCTGTCACCGGCGTGTCCGCGCGCCTCTACCTACCACCGTGCATCCAGCCAGCTACCGACGACGACGGTAAGAAGCTCCCGATCCTCCTCTTCTTCCATGCTGGCTACTTCGTCGTCGGGTCAGCGAGCTGGCCTCCTGTCCACCGCTACACCAACTCTGTCGTCGCAAGCGCCCGCGTCGTCGCCGTCGCCGTCAACTACCGCCTCGCGCCCGAGCACCTGCTCCCGACAGCCTACGACGACTCATGGGCGGCGCTCAGCTGGGCGGTGTCCGGCGCCGACCCTTGGTTCCGCGCACGGTGACACCGGCCGAGTCTTCTTGTCCGGCGCCAGCGCCGGCGGGAACATAGCCCACAACATGACCATCGCCGTGGGCGTGCGCGGCCTGGACGCCGTCGTACCGGCGCCACGCATAGAGGGCACGATCTTGCTCCACCCTTCCTTCTGCGGCGAGACGAGGATGGAGGTTGAGCCGGAGGAGTTCTGGGGCGGCGTCAAGAAGAGATGGGCGGTCATCTTCCCCGGCGCGAACGGCGGGCTGGACGATCCGCGGATGAACCCGATGGCCGCCGGCGCGCCGAGCCTGACAAAGCTGGCGTGCGAGAGGATGCTGGTCTGCTCGGCGGGGTTCGATCCGAGGAGGACAAGGGATCGGGCGTACTACGACGCAGTCAAGGCCAGCGGGTGGGGACGCGAGGTGGACTGGTTCGAGTCGGAGGGTGAGGGCCACCACTTCTTCGTCGACAAGCCCGGCAGCCACGAGGCCAGCAAGCTCATGGAACGAGTGGCTGCTTTCATTGCTGGCCATTAAACTGTGCTTCCAGCTGGATAATTTGCCTCGTGTTTCTAAGAGCAAGGATAACAGTAGAGCTCACTATCTACTATTAGCACATCTTAAAGCCAACACATATAATAGATTAGCTATAAGGTTGGCTATAATTTTTCTTTTCCTATCTCTATATCTCACTTATACATTTATTATTTTTGTCTTGGAGCTTGTGATAAGCTAGCTCTTGTATGAGAGCCAATACCTTTGATTTTTTGTTACCTCTCTACTCCATATAAGCTTATAGTAAGCTTATA]
[+] EMBL AK065686 [TTTGGGAGTAAGCTTTACCAGGAGCAGTGCGATGGATTCCAGCAGCGCCGAGATCCTCATCGACCTCGGTGGCTTCCGGCTATACAAAGATGGCCACGCCGACCGTGCCGGCGGCATGGAGAGTGTGCCTGCCGGCTACGACGACGAGACCGGCGTCACGTCCAAGGACGTCGTCATCGACGCTGTCACCGGCGTGTCCGCGCGCCTCTACCTACCACCGTGCATCCAGCCAGCTACCGACGACGACGGTAAGAAGCTCCCGATCCTCCTCTTCTTCCATGCTGGCTACTTCGTCGTCGGGTCAGCGAGCTGGCCTCCTGTCCACCGCTACACCAACTCTGTCGTCGCAAGCGCCCGCGTCGTCGCCGTCGCCGTCAACTACCGCCTCGCGCCCGAGCACCTGCTCCCGACAGCCTACGACGACTCATGGGCGGCGCTCAGCTGGGCGGTGTCCGGCGCCGACCCTTGGTTCCGCGCACGGTGACACCGGCCGAGTCTTCTTGTCCGGCGCCAGCGCCGGCGGGAACATAGCCCACAACATGACCATCGCCGTGGGCGTGCGCGGCCTGGACGCCGTCGTACCGGCGCCACGCATAGAGGGCACGATCTTGCTCCACCCTTCCTTCTGCGGCGAGACGAGGATGGAGGTTGAGCCGGAGGAGTTCTGGGGCGGCGTCAAGAAGAGATGGGCGGTCATCTTCCCCGGCGCGAACGGCGGGCTGGACGATCCGCGGATGAACCCGATGGCCGCCGGCGCGCCGAGCCTGACAAAGCTGGCGTGCGAGAGGATGCTGGTCTGCTCGGCGGGGTTCGATCCGAGGAGGACAAGGGATCGGGCGTACTACGACGCAGTCAAGGCCAGCGGGTGGGGACGCGAGGTGGACTGGTTCGAGTCGGAGGGTGAGGGCCACCACTTCTTCGTCGACAAGCCCGGCAGCCACGAGGCCAGCAAGCTCATGGAACGAGTGGCTGCTTTCATTGCTGGCCATTAAACTGTGCTTCCAGCTGGATAATTTGCCTCGTGTTTCTAAGAGCAAGGATAACAGTAGAGCTCACTATCTACTATTAGCACATCTTAAAGCCAACACATATAATAGATTAGCTATAAGGTTGGCTATAATTTTTCTTTTCCTATCTCTATATCTCACTTATACATTTATTATTTTTGTCTTGGAGCTTGTGATAAGCTAGCTCTTGTATGAGAGCCAATACCTTTGATTTTTTGTTACCTCTCTACTCCATATAAGCTTATAGTAAGCTTATA]
consensusID : consensus_10010#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1153 fasta sequence
[ACAAAACCACTCTCTCGTTGCTCGATTTGGGAGCTACTACCTTTCTTGAAGGGAGCTGCGCAATGGATTCGAGCAGCAGCGAGATCCTCGTCGACGCCGGTAGCTTCCGATTATACAAGGATGGCCACGCCGACCGTACCGGCGACATGGAGACCGTGCCCGCCGGCTTCGACGCCGACACCGGCGTCA-CCTCCAAAGACGTCGTCATCGACGCTGTCACCGGCGTCTTCGTGCGCCTCTACCTACCACTCATCCAGGCTGCTACCGATGACGACGGCAAGACGAAGCTCCCCATCCTCGTCTTCTTCCACGGC-GGCTAC-TTCGTCGTCGGGTCAGCTAGCTGCCCTAAGCGCCACCGCAAC-ATCAACGATATCGTCGCCAGGGCCCGTTTAATCGCTGTCTCCGTCGACTACCGCCTCGCTCCCGAGCACCTGCTCCCGGCGGCGTACGACGACTCCTGGGCGGCGCTCAACTGGGCGTTGTCCGGGGCCGACCCATGGCTGTCCGAGCACGGCGACACCGGCCGAGTCTTCTTGGCCGGCGTCAGCGCTGGCGGGAACATAGCCCACAACATGACCATCGCCGTGGGCGTGCGTGGCCTGGACGCCGCGGTACCGGCGCGCATAGAGGGCACAATCTTGCTCCACCCTTCGTTCTGCGGCGAGACGAGGATGGAAGGGGAGCCGGAGGAATTCTGGGAAAGCGTCAAGAAGAGGTGGTCGATCATCTTCCCCGACGCGAAGGGCGGGCTGGACGATCCGCGGATGAACCCCATGGCGGCCGGCGCGCCGAGCCTGACGAAGCTGGCGTGCGAGAGGATGCTGGTCTGCGCGGCGTCGGAGGACCCGATAAGACCAAGGGAACGTGCGTACTACGACGCCGTGAAGCGAAGTGGGTGGGGCGGAGAGGTGGATTGGTTCGAGTCAGAAGGCGAGGGCCACGCCTTCTTCGTCCGCAAGTACGGCAGCAGCAAGGCCGTCAAGCTCATGGATCGAGTGATTGCTTTCCTTGCTGGCCATTAACTGTACTCCCAAGAGAAATATTATCGCTATATTAGTCATCCGTACTTCTCTGCATCGTGTCATCGTGTCCACGAATAATTAACTATTTGCAATTTTTACGAGTGGTGATAAAAAATTTACCAGTGAAAAAA]
[+] EMBL AK061010 [ACAAAACCACTCTCTCGTTGCTCGATTTGGGAGCTACTACCTTTCTTGAAGGGAGCTGCGCAATGGATTCGAGCAGCAGCGAGATCCTCGTCGACGCCGGTAGCTTCCGATTATACAAGGATGGCCACGCCGACCGTACCGGCGACATGGAGACCGTGCCCGCCGGCTTCGACGCCGACACCGGCGTCA CCTCCAAAGACGTCGTCATCGACGCTGTCACCGGCGTCTTCGTGCGCCTCTACCTACCACTCATCCAGGCTGCTACCGATGACGACGGCAAGACGAAGCTCCCCATCCTCGTCTTCTTCCACGGC GGCTAC TTCGTCGTCGGGTCAGCTAGCTGCCCTAAGCGCCACCGCAAC ATCAACGATATCGTCGCCAGGGCCCGTTTAATCGCTGTCTCCGTCGACTACCGCCTCGCTCCCGAGCACCTGCTCCCGGCGGCGTACGACGACTCCTGGGCGGCGCTCAACTGGGCGTTGTCCGGGGCCGACCCATGGCTGTCCGAGCACGGCGACACCGGCCGAGTCTTCTTGGCCGGCGTCAGCGCTGGCGGGAACATAGCCCACAACATGACCATCGCCGTGGGCGTGCGTGGCCTGGACGCCGCGGTACCGGCGCGCATAGAGGGCACAATCTTGCTCCACCCTTCGTTCTGCGGCGAGACGAGGATGGAAGGGGAGCCGGAGGAATTCTGGGAAAGCGTCAAGAAGAGGTGGTCGATCATCTTCCCCGACGCGAAGGGCGGGCTGGACGATCCGCGGATGAACCCCATGGCGGCCGGCGCGCCGAGCCTGACGAAGCTGGCGTGCGAGAGGATGCTGGTCTGCGCGGCGTCGGAGGACCCGATAAGACCAAGGGAACGTGCGTACTACGACGCCGTGAAGCGAAGTGGGTGGGGCGGAGAGGTGGATTGGTTCGAGTCAGAAGGCGAGGGCCACGCCTTCTTCGTCCGCAAGTACGGCAGCAGCAAGGCCGTCAAGCTCATGGATCGAGTGATTGCTTTCCTTGCTGGCCATTAACTGTACTCCCAAGAGAAATATTATCGCTATATTAGTCATCCG ]
[+] EMBL CF336392 [ CAAAACCACTCTCTCGTTGCTCGATTTGGGAGCTACTACCTTTCTTGAAGGGAGCTGCGCAATGGATTCGAGCAGCAGCGAGATCCTCGTCGACGCCGGTAGCTTCCGATTATACAAGGATGGCCACGCCGACCGTACCGGCGACATGGAGACCGTGCCCGCCGGCTTCGACGCCGACACCGGCGTCA CCT CAAAGACGTCGTCATCGACGCTG CACCGGCGTCTTCGTGCGCCTCTACCTACCACTCATCCAGGCTGCTACCGATGACGACGGCAAGACGAAGCTCCCCATCCTCGTCTTCTTCCACGGCGGGCTAC TTCGTCGTCGGGTCAGCTAGCTGCCCTAAGCGCCACCGCAAC ATCAACGATATCGTCGCCAGGGCCCGTTTAATCGCTGTCTCCGTCGACTACCGCCTCGCTCCCGAGCACCTGCTCCCGGCGGCGTAC ]
[+] EMBL CB651220 [ ACTCTCTCGTTGCTCGATTTGGGAGCTACTACCTTTCTTGAAGGGAGCTGCGCAATGGATTCGAGCAGCAGCGAGATCCTCGTCGACGCCGGTAGCTTCCGATTATACAAGGATGGCCACGCCGACCGTACCGGCGACATGGAGACCGTGCCCGCCGGCTTCGACGCCGACACCGGCGTCA CCTCCAAAGACGTCGTCATCGACGCTGTCACCGGCGTCTTCGTGCGCCTCTACCTACCACTCATCCAGGCTGCTACCGATGACGACGGCAAGACGAAGCTCCCCATCCTCGTCTTCTTCCACGGC GGCTAC TTCGTCGTCGGGTCAGCTAGCTGCCCTAAGCGCCACCGCAAC ATCAACGATATCGTCGCCAGGGCCCGTTTAATCGCTGTCTCCGTCGACTACCGCCTCGCTCCCGAGCACCTGCTCCCGGCGGCGTACGACGACTCCTGGGCGGCGCTCAc ]
[+] EMBL OSC181 [ AAGGGAGCTGCGCAATGGATTCGAGCAGCAGC AGATCCTCGTCGACGCCGGTAGCTTCCGATTATACAAGGATGGCCACG CGACCGTACCGGCGACATGGAGACCGTGCCCGCCGGCTTCGACGCCGACACCG GTCAGNCTCCAAAGACGTCGTCATCGA GCTGTCACCGGCGTCTTCGTGCGCCTCTACCTACCACTCATCCAGGCTGCTACCGATGACGACGGCAAGACGAAGCTCCCCATCCTCGTCTTCTTCCACGGC GGCTACTTTCGTCGTCGGGTCAGCTAGCTGCCCTAAGCGNCACCGAAACAATCAAC ]
[-] EMBL CF336393 [ GAGGATGGAAGGGGAGCCGGAGGAATTCTGGGAAAGCGTCAAGAAGAGGTGGTCGATCATCTTCCCCGACGCGAAGGGCGGGCTGGACGATCCGCGGATGAACCCCATGGCGGCCGGCGCGCCGAGCCTGACGAAGCTGGCGTGCGAGAGGATGCTGGTCTGCGCGGCGTCGGAGGACCCGATAAGACCAAGGGAACGTGCGTACTACGACGCCGTGAAGCGAAGTGGGTGGGGCGGAGAGGTGGATTGGTTCGAGTCAGAAGGCGAGGGCCACGCCTTCTTCGTCCGCAAGTACGGCAGCAGCAAGGCCGTCAAGCTCATGGATCGAGTGATTGCTTTCCTTGCTGGCCATTAACTGTACTCCCAAGAGAAATATTATCGCTATATTAGTCATCCGTACTTCTCTGCATCGTGTCATCGTGTCCACGAATAATTAACTATTTGCAATTTTTACGAGTGGTGATAAAAAATTTACCAGTGAAAAAA]
[-] EMBL CB651221 [ TGAACCCCTTGGCGGCCGGCGCGCCGAGCCTGACGAAGCTGGCGTGCGAGAGGATGCTGGTCTGCGCGGGGTCGGAGGACCCGATAAGACCAAGGGAACGTGCGTACTACGACGCCGTGAAGCGAAGTGGGTGGGGCGGAGAGGTGGATTGGTTCGAGTCAGAAGGCGAGGGCCACGCCTTCTTCGTCCGCAAGTACGGCAGCAGCAAGGCCGTCAAGCTCATGGATCGAGTGATTGCTTTCCTTGCTGGCCATTAACTGTACTCCCAAGAGAAATATTATCGCTATATTAGTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10010#0 -------------------------TTTGGGAGTAA--GCTTTACC----AGGAGCAGTG 29
consensus_10010#1 ACAAAACCACTCTCTCGTTGCTCGATTTGGGAGCTACTACCTTTCTTGAAGGGAGCTGCG 60
******** * * ** * ***** * *
consensus_10010#0 CGATGGATTCCAGCAGCGCCGAGATCCTCATCGACCTCGGTGGCTTCCGGCTATACAAAG 89
consensus_10010#1 CAATGGATTCGAGCAGCAGCGAGATCCTCGTCGACGCCGGTAGCTTCCGATTATACAAGG 120
* ******** ****** ********** ***** **** ******* ******* *
consensus_10010#0 ATGGCCACGCCGACCGTGCCGGCGGCATGGAGAGTGTGCCTGCCGGCTACGACGACGAGA 149
consensus_10010#1 ATGGCCACGCCGACCGTACCGGCGACATGGAGACCGTGCCCGCCGGCTTCGACGCCGACA 180
***************** ****** ******** ***** ******* ***** *** *
consensus_10010#0 CCGGCGTCACGTCCAAGGACGTCGTCATCGACGCTGTCACCGGCGTGTCCGCGCGCCTCT 209
consensus_10010#1 CCGGCGTCACCTCCAAAGACGTCGTCATCGACGCTGTCACCGGCGTCTTCGTGCGCCTCT 240
********** ***** ***************************** * ** ********
consensus_10010#0 ACCTACCACCGTGCATCCAGCCAGCTACCGACGACGACGGTAAGA---AGCTCCCGATCC 266
consensus_10010#1 ACCTACCACT---CATCCAGGCTGCTACCGATGACGACGGCAAGACGAAGCTCCCCATCC 297
********* ******* * ******** ******** **** ******* ****
consensus_10010#0 TCCTCTTCTTCCATGCTGGCTACTTCGTCGTCGGGTCAGCGAGCTGGCCTCCTGTCCACC 326
consensus_10010#1 TCGTCTTCTTCCACGGCGGCTACTTCGTCGTCGGGTCAGCTAGCTGCCCTAAGCGCCACC 357
** ********** * *********************** ***** *** *****
consensus_10010#0 GCTACACCAACTCTGTCGTCGCAAGCGCCCGCGTCGTCGCCGTCGCCGTCAACTACCGCC 386
consensus_10010#1 GCAACATCAACGATATCGTCGCCAGGGCCCGTTTAATCGCTGTCTCCGTCGACTACCGCC 417
** *** **** * ******* ** ***** * **** *** ***** *********
consensus_10010#0 TCGCGCCCGAGCACCTGCTCCCGACAGCCTACGACGACTCATGGGCGGCGCTCAGCTGGG 446
consensus_10010#1 TCGCTCCCGAGCACCTGCTCCCGGCGGCGTACGACGACTCCTGGGCGGCGCTCAACTGGG 477
**** ****************** * ** *********** ************* *****
consensus_10010#0 CGGTGTCCGGCGCCGACCCTTGGTT--CCGCGCACGGTGACACCGGCCGAGTCTTCTTGT 504
consensus_10010#1 CGTTGTCCGGGGCCGACCCATGGCTGTCCGAGCACGGCGACACCGGCCGAGTCTTCTTGG 537
** ******* ******** *** * *** ****** *********************
consensus_10010#0 CCGGCGCCAGCGCCGGCGGGAACATAGCCCACAACATGACCATCGCCGTGGGCGTGCGCG 564
consensus_10010#1 CCGGCGTCAGCGCTGGCGGGAACATAGCCCACAACATGACCATCGCCGTGGGCGTGCGTG 597
****** ****** ******************************************** *
consensus_10010#0 GCCTGGACGCCGTCGTACCGGCGCCACGCATAGAGGGCACGATCTTGCTCCACCCTTCCT 624
consensus_10010#1 GCCTGGACGCCGCGGTACCGGCGC---GCATAGAGGGCACAATCTTGCTCCACCCTTCGT 654
************ ********** ************* ***************** *
consensus_10010#0 TCTGCGGCGAGACGAGGATGGAGGTTGAGCCGGAGGAGTTCTGGGGCGGCGTCAAGAAGA 684
consensus_10010#1 TCTGCGGCGAGACGAGGATGGAAGGGGAGCCGGAGGAATTCTGGGAAAGCGTCAAGAAGA 714
********************** * *********** ******* ************
consensus_10010#0 GATGGGCGGTCATCTTCCCCGGCGCGAACGGCGGGCTGGACGATCCGCGGATGAACCCGA 744
consensus_10010#1 GGTGGTCGATCATCTTCCCCGACGCGAAGGGCGGGCTGGACGATCCGCGGATGAACCCCA 774
* *** ** ************ ****** ***************************** *
consensus_10010#0 TGGCCGCCGGCGCGCCGAGCCTGACAAAGCTGGCGTGCGAGAGGATGCTGGTCTGCTCGG 804
consensus_10010#1 TGGCGGCCGGCGCGCCGAGCCTGACGAAGCTGGCGTGCGAGAGGATGCTGGTCTGCGCGG 834
**** ******************** ****************************** ***
consensus_10010#0 CGGGGTTCGATCCGAGGAGGACAAGGGATCGGGCGTACTACGACGCAGTCAAGGCCAGCG 864
consensus_10010#1 CGTCGGAGGACCCGATAAGACCAAGGGAACGTGCGTACTACGACGCCGTGAAGCGAAGTG 894
** * ** **** ** ******* ** ************** ** *** ** *
consensus_10010#0 GGTGGGGACGCGAGGTGGACTGGTTCGAGTCGGAGGGTGAGGGCCACCACTTCTTCGTCG 924
consensus_10010#1 GGTGGGGCGGAGAGGTGGATTGGTTCGAGTCAGAAGGCGAGGGCCACGCCTTCTTCGTCC 954
******* * ******** *********** ** ** ********* **********
consensus_10010#0 ACAAGCCCGGCAGCCACGAGGCCAGCAAGCTCATGGAACGAGTGGCTGCTTTCATTGCTG 984
consensus_10010#1 GCAAGTACGGCAGCAGCAAGGCCGTCAAGCTCATGGATCGAGTGATTGCTTTCCTTGCTG 1014
**** ******* * ***** ************ ****** ******* ******
consensus_10010#0 GCCATTAAACTGTGCTTCCAGCTGGATAATTTGCCTCGTGTTTCTAAGAGCAAGGATAAC 1044
consensus_10010#1 GCCATTAA-CTGTACTCCCAAGAGAAATATTATCGCTATATT-----------AGTCATC 1062
******** **** ** *** * * *** * * ** * * *
consensus_10010#0 AGTAGAGCTCACTATCTACTATTAGCACATCTTAAAGCCAACACATATAATAGATTAGCT 1104
consensus_10010#1 CGTAC--TTCTCTGCATCGTGTCATCGTGTCCACGAATAATTAACTATTTGCAATT---T 1117
*** ** ** * * * * * ** * * * *** *** *
consensus_10010#0 ATAAGGTTGGCTATAATTTTTCTTTTCCTATCTCTATATCTCACTTATACATTTATTATT 1164
consensus_10010#1 TTACGAGTGGTGATAAAAAAT--TTACCAGTGAAAAAA---------------------- 1153
** * *** **** * ** ** * * *
consensus_10010#0 TTTGTCTTGGAGCTTGTGATAAGCTAGCTCTTGTATGAGAGCCAATACCTTTGATTTTTT 1224
consensus_10010#1 ------------------------------------------------------------
consensus_10010#0 GTTACCTCTCTACTCCATATAAGCTTATAGTAAGCTTATA 1264
consensus_10010#1 ----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||