These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10021#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 738 fasta sequence [ACCTCGCGCCGCCTCCCACCTTCCCGTTTCTTCTTTCTTGCGCCGCAAGAACGCGAATAGCTTTATCTACCGCCGCTCTCTTCCACTCCGGCTCGCCGCGCGTCGCCTGCCTCGCTCCCACCGTTTCCGTCTCGCCGGAATCCTCCCCCCTCCGCCCGCGGATACAGTTGTCCCCGGTCGGTGTCGATATGGCTACTCCCTTGGTAGCTGGGTTGTCAGTAGCTGCTGCTGCAATGGGAAGCAGATATATGCTCCAGGCATGGCAAGCCTTCCGGACCCGTGCAGCAATGCCACGAGTGCGGCGGTTCTACCCT-GGTGGATTCGAGAGAGAAATGACAAGAAGAGAGGCGGCACTGATCCTTGGCGTAAGAGAACGTGCTGCATTCGATAAGATCAAGGAGGCTCACAAGAGGGTAATGGTAGCCAATCACCCTGATGCTGGTGGGAGCCAATACATCGCTTCGAAGATAAATGAGGCAAAGGACATGCTGATGGGGAAAGGAAAATCTGGTTCCATGTTTTAATCTGTCTAAAAGGAAACAGAATTTTGTTTTTGCCATGACCATGATGACTTGTAGTGGTTCATGTTAATCGACCTTAACATGCTGTGCTGATTGTACCATAGATCTGAACCAAAAAACAAATGCAAGTTACTGGATTGAGTAACTCAATATCCTGCTAAAGTATATTGTTCAGAGCCAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK107941 [ACCTCGCGCCGCCTCCCACCTTCCCGTTTCTTCTTTCTTGCGCCGCAAGAACGCGAATAGCTTTATCTACCGCCGCTCTCTTCCACTCCGGCTCGCCGCGCGTCGCCTGCCTCGCTCCCACCGTTTCCGTCTCGCCGGAATCCTCCCCCCTCCGCCCGCGGATACAGTTGTCCCCGGTCGGTGTCGATATGGCTACTCCCTTGGTAGCTGGGTTGTCAGTAGCTGCTGCTGCAATGGGAAGCAGATATATGCTCCAGGCATGGCAAGCCTTCCGGACCCGTGCAGCAATGCCACGAGTGCGGCGGTTCTACCCT GGTGGATTCGAGAGAGAAATGACAAGAAGAGAGGCGGCACTGATCCTTGGCGTAAGAGAACGTGCTGCATTCGATAAGATCAAGGAGGCTCACAAGAGGGTAATGGTAGCCAATCACCCTGATGCTGGTGGGAGCCAATACATCGCTTCGAAGATAAATGAGGCAAAGGACATGCTGATGGGGAAAGGAAAATCTGGTTCCATGTTTTAATCTGTCTAAAAGGAAACAGAATTTTGTTTTTGCCATGACCATGATGACTTGTAGTGGTTCATGTTAATCGACCTTAACATGCTGTGCTGATTGTACCATAGATCTGAACCAAAAAACAAATGCAAGTTACTGGATTGAGTAACTCA ] [+] EMBL C29091 [ GCGCCG AGAACGCGAATAG TTTATCTACCGCCGCTCTCTTCCACTCCGGCTCGCC CGCGTCGCCTGCCTCGCTCCCACCGTTTCCGTCTCGCCGGAATCCTCCCCCCTCCGCCCGCGANTACAGTTGTCCCCGGTCGGTGTCGATATGGCTACTCCCTTGGTAGCTGGGTTGTCAGTAGCTGCTGCTGCAATGGGAAGCAGATATATGCTCCAGGCATGGCAAGCCTTCCGGACCCGTGCAGCAATGCCACGAGTGCGGCGGTTCTACCCTGGGTGGATTCGAGAGAGAAATGACAAGAAGAGAGGCGGCACTGATCCTTGGCGTAAGAGAACGTGCTGCATTCGATAAGATCAA ] [+] EMBL CF315020 [ CCATTACATCGCTTCGAAGATAAATGAGGCAAAGGACATGCTGATGGGGAAAGGAAAATCTGGTTCCATGTTTTAATCTGTCTAAAAGGAAACAGAATTTTGTTTTTGCCATGACCATGATGACTTGTAGTGGTTCATGTTAATCGACCTTAACATGCTGTGCTGATTGTACCATAGATCTGAACCAAAAAACAAATGCAAGTTACTGGATTGAGTAACTCAATATCCTGCTAAAGTATATTGTTCAGAGCCAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10021#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 636 fasta sequence [GACACTGCCATGGACTGAAGGAGTAGAAAGCCGCGCGTCGCCTGCCTCGCTCCACCGTTTCCGTCTCGCCGGAATCCTCCCCCCTCCGCCCGCGGATACAGTTGTCCCCGGTCGGTGTCGATATGGCTACTCCCTTGGTAGCTGGGTTGTCAGTAGCTGCTGCTGCAATGGGAAGCAGATATATGCTCCAGGCATGGCAAGCCTTCCGGACCCGTGCAGCAATGCCACGAGTGCGGCGGTTCTACCCTGGTGGATTCGAGAGAGAAATGACAAGAAGAGAGGCGGCACTGATCCTTGGCGTAAGAGAACGTGCTGCATTCGATAAGATCAAGGAGGCTCACAAGAGGGTAATGGTAGCCAATCACCCTGATGCTGGTGGGAGCCATTACATCGCTTCGAAGATAAATGAGGCAAAGGACATGCTGATGGGGAAAGGAAAATCTGGTTCCATGTTTTAATCTGTCTAAAAGGAAACAGAATTTTGTTTTTGCCATGACCATGATGACTNNTGTAGTGGTTCATGTTAATCGACCTTAACATGCTGTGCTGATTGTACCATAGATCTGAACCAAAAAACAAATGCAAGTTACTGGATTGAGTAACTCAATATCCTGCTAACAAAAAAAAAAAAAAAAA] [+] EMBL CF314259 [GACACTGCCATGGACTGAAGGAGTAGAAAGCCGCGCGTCGCCTGCCTCGCTCCACCGTTTCCGTCTCGCCGGAATCCTCCCCCCTCCGCCCGCGGATACAGTTGTCCCCGGTCGGTGTCGATATGGCTACTCCCTTGGTAGCTGGGTTGTCAGTAGCTGCTGCTGCAATGGGAAGCAGATATATGCTCCAGGCATGGCAAGCCTTCCGGACCCGTGCAGCAATGCCACGAGTGCGGCGGTTCTACCCTGGTGGATTCGAGAGAGAAATGACAAGAAGAGAGGCGGCACTGATCCTTGGCGTAAGAGAACGTGCTGCATTCGATAAGATCAAGGAGGCTCACAAGAGGGTAATGGTAGCCAATCACCCTGATGCTGGTGGGAGCCATTACATCGCTTCGAAGATAAATGAGGCAAAGGACATGCTGATGGGGAAAGGAAAATCTGGTTCCATGTTTTAATCTGTCTAAAAGGAAACAGAATTTTGTTTTTGCCATGACCATGATGACTNNTGTAGTGGTTCATGTTAATCGACCTTAACATGCTGTGCTGATTGTACCATAGATCTGAACCAAAAAACAAATGCAAGTTACTGGATTGAGTAACTCAATATCCTGCTAACAAAAAAAA ] [+] EMBL AU182167 [ GCTGCATTCGATAAGATCAAGGAGGCTCCCAAGAGGGTAATGGTAGCCAATCNCCCTGATGCTGGTGGGAGCCATTACATCGCTTNGAAGATAAATGAGGCAAAGGACATGCTGATGGGGAAAGGAAAATCTGGTTCCATGTTTTAATCTGTNTAAAAGGAAACAGAATTTTGTTTTTGCCATGACCATGATGACT TGTAGTGGTTCATGTTAATCGACCTTAACATGCTGTGCTGATTGTACCATAGATTTGAACCAAAAAACAAATGCAAGTTACTGGATTGAGTAACTCAATATCCTGCTNAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10021#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence [CCAGATATATGCTCCAGGCATGGCAANGCCTTCCGGACCCGTGCAGCTAATGTCCACGAGTGCGGCGGTTNTACCCCTGGTGGATTCGAGAGAGAAATGACCACAGAAGAGAGGCGGCTCTGATCCCTTGGCGTAAGAGAACGTGCTGCATTCGATAAGATAAGGAGGCTCACACAAGAGGGTAATGGTAGCCCATCACCCCTGATGCTGGTGGGANCCACTTACATCGCTTCGAAGATAAATGAGGCCCAAGGACCACTGCTGATGGGGAAAGGAAAATTCTGGTTCCACTGTTTTAATCTGTTCTAAAAGGAAACACGAATTTTGTTTTTGCCACTGACCCACTGATGACCTTGTAGTGGTTCACTGTTAACTCGACCCTTAACCACTGCTGTGCTGATTGTGACCCACTAGATCTGAACCCCAAAAACCACAATGCCAAGTTACTGGATTGAGTAACTCAATATCCTGTAAAGTATATTGTTCAGAGCCTCCCAAAAAAAAAA] [+] EMBL BQ909052 [CCAGATATATGCTCCAGGCATGGCAANGCCTTCCGGACCCGTGCAGCTAATGTCCACGAGTGCGGCGGTTNTACCCCTGGTGGATTCGAGAGAGAAATGACCACAGAAGAGAGGCGGCTCTGATCCCTTGGCGTAAGAGAACGTGCTGCATTCGATAAGATAAGGAGGCTCACACAAGAGGGTAATGGTAGCCCATCACCCCTGATGCTGGTGGGANCCACTTACATCGCTTCGAAGATAAATGAGGCCCAAGGACCACTGCTGATGGGGAAAGGAAAATTCTGGTTCCACTGTTTTAATCTGTTCTAAAAGGAAACACGAATTTTGTTTTTGCCACTGACCCACTGATGACCTTGTAGTGGTTCACTGTTAACTCGACCCTTAACCACTGCTGTGCTGATTGTGACCCACTAGATCTGAACCCCAAAAACCACAATGCCAAGTTACTGGATTGAGTAACTCAATATCCTGTAAAGTATATTGTTCAGAGCCTCCCAAAAAAAAAA] consensusID : consensus_10021#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [CCAGGCATGGCAAGCCTTCCGGACCCGTGCAGCAATGCCACGAGTGCGGCGGTTNTACCCTGGTGGATTCGAGAGAGAAATGNCAAGAAGAGAGGCGGCNCTGATCCTTGGCGTAANAGAACGTGCTGCATTCGATAAGATCAAGGAGGCTCNCAAGAGGGTAATGGTAGCCAATCNCCCTGATGCTGGTGGGAGCCATTACATCGCTTNGAAGATAAATGAGGCAAAGGACATGCTGATGGGGAAAGGAAAATCTGGTTCCATGTTTTAATCTGTNTAAAAGGAAACAGAATTTTGTTTTTGCCATGACCATGATGACTTGTAGTGGTTCATGTTAATCGACCTTAACATGCTGTGCTGATTGTACCATAGATNTGAACCAAAAAACAAATGCAAGTTACTGGATTGAGTAAAAAAAAAAAAAA] [+] EMBL AU172386 [CCAGGCATGGCAAGCCTTCCGGACCCGTGCAGCAATGCCACGAGTGCGGCGGTTNTACCCTGGTGGATTCGAGAGAGAAATGNCAAGAAGAGAGGCGGCNCTGATCCTTGGCGTAANAGAACGTGCTGCATTCGATAAGATCAAGGAGGCTCNCAAGAGGGTAATGGTAGCCAATCNCCCTGATGCTGGTGGGAGCCATTACATCGCTTNGAAGATAAATGAGGCAAAGGACATGCTGATGGGGAAAGGAAAATCTGGTTCCATGTTTTAATCTGTNTAAAAGGAAACAGAATTTTGTTTTTGCCATGACCATGATGACTTGTAGTGGTTCATGTTAATCGACCTTAACATGCTGTGCTGATTGTACCATAGATNTGAACCAAAAAACAAATGCAAGTTACTGGATTGAGTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10021#0 ACCTCGCGCCGCCTCCCACCTTCCCGTTTCTTCTTTCTTGCGCCGCAAGAACGCGAATAG 60 consensus_10021#1 ------------------------------------------------------------ consensus_10021#3 ------------------------------------------------------------ consensus_10021#2 ------------------------------------------------------------ consensus_10021#0 CTTTATCTACCGCCGCTCTCTTCCACTCCGGCTCGCCGCGCGTCGCCTGCCTCGCTCCCA 120 consensus_10021#1 -----GACACTGCCATGGACTGAAGGAGTAGAAAGCCGCGCGTCGCCTGCCTCGCTCC-A 54 consensus_10021#3 ------------------------------------------------------------ consensus_10021#2 ------------------------------------------------------------ consensus_10021#0 CCGTTTCCGTCTCGCCGGAATCCTCCCCCCTCCGCCCGCGGATACAGTTGTCCCCGGTCG 180 consensus_10021#1 CCGTTTCCGTCTCGCCGGAATCCTCCCCCCTCCGCCCGCGGATACAGTTGTCCCCGGTCG 114 consensus_10021#3 ------------------------------------------------------------ consensus_10021#2 ------------------------------------------------------------ consensus_10021#0 GTGTCGATATGGCTACTCCCTTGGTAGCTGGGTTGTCAGTAGCTGCTGCTGCAATGGGAA 240 consensus_10021#1 GTGTCGATATGGCTACTCCCTTGGTAGCTGGGTTGTCAGTAGCTGCTGCTGCAATGGGAA 174 consensus_10021#3 ------------------------------------------------------------ consensus_10021#2 ------------------------------------------------------------ consensus_10021#0 GCAGATATATGCTCCAGGCATGGCAAG-CCTTCCGGACCCGTGCAGC-AATG-CCACGAG 297 consensus_10021#1 GCAGATATATGCTCCAGGCATGGCAAG-CCTTCCGGACCCGTGCAGC-AATG-CCACGAG 231 consensus_10021#3 -------------CCAGGCATGGCAAG-CCTTCCGGACCCGTGCAGC-AATG-CCACGAG 44 consensus_10021#2 CCAGATATATGCTCCAGGCATGGCAANGCCTTCCGGACCCGTGCAGCTAATGTCCACGAG 60 ************* ******************* **** ******* consensus_10021#0 TGCGGCGGTTCTACCC-TGGTGGATTCGAGAGAGAAATGACAA--GAAGAGAGGCGGCAC 354 consensus_10021#1 TGCGGCGGTTCTACCC-TGGTGGATTCGAGAGAGAAATGACAA--GAAGAGAGGCGGCAC 288 consensus_10021#3 TGCGGCGGTTNTACCC-TGGTGGATTCGAGAGAGAAATGNCAA--GAAGAGAGGCGGCNC 101 consensus_10021#2 TGCGGCGGTTNTACCCCTGGTGGATTCGAGAGAGAAATGACCACAGAAGAGAGGCGGCTC 120 ********** ***** ********************** * * ************* * consensus_10021#0 TGATCC-TTGGCGTAAGAGAACGTGCTGCATTCGATAAGATCAAGGAGGCTCACA--AGA 411 consensus_10021#1 TGATCC-TTGGCGTAAGAGAACGTGCTGCATTCGATAAGATCAAGGAGGCTCACA--AGA 345 consensus_10021#3 TGATCC-TTGGCGTAANAGAACGTGCTGCATTCGATAAGATCAAGGAGGCTCNCA--AGA 158 consensus_10021#2 TGATCCCTTGGCGTAAGAGAACGTGCTGCATTCGATAAGAT-AAGGAGGCTCACACAAGA 179 ****** ********* ************************ ********** ** *** consensus_10021#0 GGGTAATGGTAGCCAATCACCC-TGATGCTGGTGGGAGCCA-ATACATCGCTTCGAAGAT 469 consensus_10021#1 GGGTAATGGTAGCCAATCACCC-TGATGCTGGTGGGAGCCA-TTACATCGCTTCGAAGAT 403 consensus_10021#3 GGGTAATGGTAGCCAATCNCCC-TGATGCTGGTGGGAGCCA-TTACATCGCTTNGAAGAT 216 consensus_10021#2 GGGTAATGGTAGCCCATCACCCCTGATGCTGGTGGGANCCACTTACATCGCTTCGAAGAT 239 ************** *** *** ************** *** ********** ****** consensus_10021#0 AAATGAGGCA-AAGGACA--TGCTGATGGGGAAAGGAAAAT-CTGGTTCCA-TGTTTTAA 524 consensus_10021#1 AAATGAGGCA-AAGGACA--TGCTGATGGGGAAAGGAAAAT-CTGGTTCCA-TGTTTTAA 458 consensus_10021#3 AAATGAGGCA-AAGGACA--TGCTGATGGGGAAAGGAAAAT-CTGGTTCCA-TGTTTTAA 271 consensus_10021#2 AAATGAGGCCCAAGGACCACTGCTGATGGGGAAAGGAAAATTCTGGTTCCACTGTTTTAA 299 ********* ****** ********************* ********* ******** consensus_10021#0 TCTGT-CTAAAAGGAAACA-GAATTTTGTTTTTGCCA-TGACCA--TGATGACTTGT--A 577 consensus_10021#1 TCTGT-CTAAAAGGAAACA-GAATTTTGTTTTTGCCA-TGACCA--TGATGACTNNTGTA 513 consensus_10021#3 TCTGT-NTAAAAGGAAACA-GAATTTTGTTTTTGCCA-TGACCA--TGATGACTTGT--A 324 consensus_10021#2 TCTGTTCTAAAAGGAAACACGAATTTTGTTTTTGCCACTGACCCACTGATGACCTTG-TA 358 ***** ************ ***************** ***** ******* * consensus_10021#0 GTGGTTCA-TGTTAA-TCGACC-TTAACA--TGCTGTGCTGATTGTA--CCA-TAGATCT 629 consensus_10021#1 GTGGTTCA-TGTTAA-TCGACC-TTAACA--TGCTGTGCTGATTGTA--CCA-TAGATCT 565 consensus_10021#3 GTGGTTCA-TGTTAA-TCGACC-TTAACA--TGCTGTGCTGATTGTA--CCA-TAGATNT 376 consensus_10021#2 GTGGTTCACTGTTAACTCGACCCTTAACCACTGCTGTGCTGATTGTGACCCACTAGATCT 418 ******** ****** ****** ***** *************** *** ***** * consensus_10021#0 GAACC--AAAAAACA-AATGC-AAGTTACTGGATTGAGTAACTCAATATCCTGCTAAAGT 685 consensus_10021#1 GAACC--AAAAAACA-AATGC-AAGTTACTGGATTGAGTAACTCAATATCCTGCTAA--- 618 consensus_10021#3 GAACC--AAAAAACA-AATGC-AAGTTACTGGATTGAGTAAAAAAAAAAAAAA------- 425 consensus_10021#2 GAACCCCAAAAACCACAATGCCAAGTTACTGGATTGAGTAACTCAATATCCTG-TAAAGT 477 ***** ***** ** ***** ******************* ** * consensus_10021#0 ATATTGTTCAGAGCCAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 738 consensus_10021#1 --------------CAAAAAAAAAAAAAAAAA--------------------- 636 consensus_10021#3 ----------------------------------------------------- consensus_10021#2 ATATTGTTCAGAGCCTCCCAAAAAAAAAA------------------------ 506 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||