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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10024#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1650 fasta sequence
[ATCAATCAGTGGGAGAGGATTAAGATGATGATGATCTGTCTCTTAGGCCTCCATCACGCCCGTTAATTCCCTTTCAGGCTGGTCTTCGCCTACCTGTTGCTGCTGCTCCTCCATCAAATACCCCCATTCCCTCTCCTCTCTGCTACTACTATACCTCCTTCTTGTTCCTTTCTTCAGACAAAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTAATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTGGTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGCGGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATGGCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATCTCCGCCTGGAGCAACGCCGACGACTCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCCGTCGACTCCAACGACTCGCTGGCCGCCGCCGC-CGCCGCCAAC-GTCACCGTCGTTGCTGCTCCGGCTCCCGCCCCCGTCCAGGCTCCGGCGCCAGCGTCCCCTTACGGCGACCTGGAGGAGGTGCTCCGGCGAGCGGCGACCAAGGACAGGACGGTGATCATGACGCAGATCAACCTGGCGTGGACGAAGCCGGGGTCGCTGCTGGACCTCTTCTTCGAGAGCTTCAGGCTCGGCGAGGGCGGCGTGTCGCGGCTGCTGGACCACCTGGTGATCGTCACCATGGACCCGGCGGCGTACGAGGGCTGCCAGGCGGTGCACCGCCATTGCTACTTCCTCCGCACCACCGGCGTCGACTACCGCTCC--GAAGATGTTCATGAGTAAGGACTACCTCGAGATGATGTGGGGTCGCAACAAGTTCCAGCAGACCATCCTCGAGCTCGGATACAACTTCCTCTTCACGGATGTGGACGTGATGTGGTTCAGGGACCCGTTCAGGCACATATCAATGGGAGCAGACATCGCCATCTCCAGCGACGTGTTCATCGGCGACCCCTACAGCCTCGGCAACTTCCCCAATGGCGGCTTCCTGTTCGTGCGATCCAACGACAAGACCCTCGATTTCTACCGGAGTTGGCAGCAAGGGAGGTGGCGATTCTTCGGGAAGCACGAGCAGGACGTGTTCAACCTGATCAAGCACGAGCAGCAGGCGAAGCTGGGCATCGCCATCCAGTTCCTCGACACCACCTACATCAGTGGCTTCTGTCAGCTCAGCAAGGATCTGAACAAGATCTGCACGCTCCATGCCAACTGCTGTGTTGGCCTCGGCGCCAAGATGCACGACCTCCGAGGCGTCCTCGACGTCTGGAGGAACTACACGGCGGCGCCGCCCGACGAGCGGCGCTCGGGCAAGTTCCAGTGGAAGCTCCCCGGCATCTGCATCCACTGATCGATCGATCGATCATATGTTCATATGCATATACACGCAGCGTTCAGCATTGCTGGATTGCCTTGGCTGCTTGGTTAATTTAGCTAGGCGATCGCTCGACTGCAGGCCGGTTAATTTCTCGAGCTGCCAAATTCTTTCTCCTCAATTATTAGTTGCGCCGATTC]
[+] EMBL AK069826 [ATCAATCAGTGGGAGAGGATTAAGATGATGATGATCTGTCTCTTAGGCCTCCATCACGCCCGTTAATTCCCTTTCAGGCTGGTCTTCGCCTACCTGTTGCTGCTGCTCCTCCATCAAATACCCCCATTCCCTCTCCTCTCTGCTACTACTATACCTCCTTCTTGTTCCTTTCTTCAGACAAAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTAATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTGGTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGCGGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATGGCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATCTCCGCCTGGAGCAACGCCGACGACTCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCCGTCGACTCCAACGACTCGCTGGCCGCCGCCGC CGCCGCCAAC GTCACCGTCGTTGCTGCTCCGGCTCCCGCCCCCGTCCAGGCTCCGGCGCCGGCGTCCCCTTACGGCGACCTGGAGGAGGTGCTCCGGCGAGCGGCGACCAAGGACAGGACGGTGATCATGACGCAGATCAACCTGGCGTGGACGAAGCCGGGGTCGCTGCTGGACCTCTTCTTCGAGAGCTTCAGGCTCGGGGAGGGCGGCGTGTCGCGGCTGCTGGACCACCTGGTGATCGTCACCATGGACCCCGCGGCGTACGAGGGGTGCCAGGCGGTGCACCGCCATTGCTACTTCCTCCGCACCACCGGCGTCGACTACCGCTCC GAAGATGTTCATGAGCAAGGACTACCTCGAGATGATGTGGGGTCGCAACAAGTTTCAGCAGACCATCCTTGAGCTCGGCTACAACTTCCTCTTCACGGATGTGGACGTGATGTGGTTCAGGGACCCGTTCAGGCACA ]
[+] EMBL BI306268 [ ctGCGGCCGCTCGCCGCCAAC GTCACCGTCGTTGCTGCTCCGGCTCCCGCCCCCGTCCAGGCTCCGGCGCCAGCGTCCCCTTACGGCGACCTGGAGGAGGTGCTCCGGCGAGCGGCGACCAAGGACAGGACGGTGATCATGACGCAGATCAACCTGGCGTGGACGAAGCCGGGGTCGCTGCTGGACCTCTTCTTCGAGAGCTTCAGGCTCGGCGAGGGCGGCGTGTCGCGGCTGCTGGACCACCTGGTGATCGTCACCATGGACCCGGCGGCGTACGAGGGCTGCCAGGCGGTGCACCGCCATTGCTACTTCCTCCGCACCACCGGCGTCGACTACCGCTCCGAGAAGATGTTCATGAGTAAGGACTACCTCGAGATGATGTGGGGTCGCAACAAGTTCCAGCAGACCATCCTCGAGCTCGGATACAACTTTCTCTTCACGGATGTGGACGTGATGTGGTTCAGGGACCCGTTCAGGCACATATCAATGGGAGCAGACATCGCCATCTCCAGCGAC ]
[+] EMBL CB965640 [ atagcttCGGCGCTCGCCG CAACTGT A CGTCGTTGCTGCT CGGCT CCGCCCCCGT CAGGCT CGGCGCCAGCGNTCCCTTACGGCGACCTGGAGGAGGTGCTCCGGCGAGCGGCGACCAAGGACAGGACGGTGATCATGACGCAGATCAACCTGGCGTGGACGAAGCCGGGGTCGCTGATGGACCTCTTCTTCGAGAGCTTCAGG ]
[+] EMBL CB966320 [ gCGG CGCCGCGCAC GTC CC CG TGCGCCGGCT CCGCCCCC CCAGGCTCCGGCGCCAGCGT CCTTACGGCGA CTGGAGGAGG GCTCCGGCGAGCGGCGACCAAGGACAGGACGG GATCATGACGCAGATCAACCTGGCG GGACGAAGCCGGGGTCGCTGCTGGACCTCTTCTTCGAGAGCTTCAGGCTCGGCGAGGGCGGCGTGTCGCGGCTGCTGG NCACCTGGTGATCGTCACCATGGACCCGGCGGCGTACGAGGGCTGCCAGGCGGTGCACCGCCATTGCTACTTCCTCCGCACCACCGGCGTCGACTACCGCTCCGAGAAGATGTTCATGAGTAAGGACTACCTCGAGATGATGTGGGGTCGCAACAAGTTCCAGCAGACCATCCTCGAGCTCGGATACAACTTTCTCTTCACGGATGTGGACGTGATGTGGTTCAGGGACCCGTTCAGGCACATATCAATGGGAGCAGACATCGCCATCTCCAGCGAC ]
[+] EMBL CB000912 [ AACTTCCTCTTCACGGATGTGGACGTGATGTGGTTCAGGGACCCGTTCAGGCACATATCAATGGGAGCAGACATCGCCATCTCCAGCGACGTGTTCATCGGCGACCCCTACAGCCTCGGCAACTTCCCCAATGGCGGCTTCCTGTTCGTGCGATCCAACGACAAGACCCTCGATTTCTACCGGAGTTGGCAGCAAGGGAGGTGGCGATTCTTCGGGAAGCACGAGCAGGACGTGTTCAACCTGATCAAGCACGAGCAGCAGGCGAAGCTGGGCATCGCCATCCAGTTCCTCGACACCACCTACATCAGTGGCTTCTGTCAGCTCAGCAAGGATCTGAACAAGATCTGCACGCTCCATGCCAACTGCTGTGTTGGCCTCGGCGCCAAGATGCACGACCTCCGAGGCGTCCTCGACGTCTGGAGGAACTACACGGCGGCGCCGCCCGACGAGCGGCGCTCGGGCAAGTTCCAGTGGAAGCTCCCCGGCATCTGCATCCACTGATCGATCGATCGATCATATGTTCATATGCATATACACGCAGCGTTCAGCATTGCTGGATTGCCTTGGCTGCTTGGTTAATTTAGCTAGGCGATCGCTCGACTGCAGGCCGGTTAATTTCTCGAGCTGCCAAATTCTTTCTCCTCAATTATTAGTTGCGCCGATTC]
[+] EMBL CB001074 [ TGGACGTGATGTGGTTCAGGGACCCGTTCAGGTACACATCAATGGGAGCAGACATCGCCATCTCCAGCGACGTGTTCATCGGCGACCCCTACAGCCTCGGCAACTTCCCCAATGGCGGCTTCCTGTTCGTGCGATCCAACGACAAGACCCTCGATTTCTACCGGAGTTGGCAGCAAGGGAGGTGGCGATTCTTCGGGAAGCACGAGCAGGACGTGTTCAACCTGATCAAGCACGAGCAGCAGGCGAAGCTGGGCATCGCCAT ]
consensusID : consensus_10024#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence
[CTTCTTGTTCCTTTCTTCAGACAAAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTAATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTGGTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGCGGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATGGCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATCTCCGCCTGGAGCAACGCCGACGACGCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCCGTCGACTCCAACGACTCGCTGGCCGCCGCCGCCGCCGCCAACGTCACCGTCGTTGCTGCTCCGGCTCCCGCCCCCGTCCAGGTATGCACATATTTGCCATTTTTTTTATTGCTTCAATATGCTATGAACAAAACGAATTGATTGGCACCAATATCATTTCTGAAGA]
[+] EMBL AK106469 [CTTCTTGTTCCTTTCTTCAGACAAAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTAATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTGGTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGCGGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATGGCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATCTCCGCCTGGAGCAACGCCGACGACGCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCCGTCGACTCCAACGACTCGCTGGCCGCCGCCGCCGCCGCCAACGTCACCGTCGTTGCTGCTCCGGCTCCCGCCCCCGTCCAGGTATGCACATATTTGCCATTTTTTTTATTGCTTCAATATGCTATGAACAAAACGAATTGATTGGCACCAATATCATTTCTGAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10024#0 ATCAATCAGTGGGAGAGGATTAAGATGATGATGATCTGTCTCTTAGGCCTCCATCACGCC 60
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 CGTTAATTCCCTTTCAGGCTGGTCTTCGCCTACCTGTTGCTGCTGCTCCTCCATCAAATA 120
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 CCCCCATTCCCTCTCCTCTCTGCTACTACTATACCTCCTTCTTGTTCCTTTCTTCAGACA 180
consensus_10024#1 -------------------------------------CTTCTTGTTCCTTTCTTCAGACA 23
***********************
consensus_10024#0 AAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTA 240
consensus_10024#1 AAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTA 83
************************************************************
consensus_10024#0 ATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTG 300
consensus_10024#1 ATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTG 143
************************************************************
consensus_10024#0 GTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGC 360
consensus_10024#1 GTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGC 203
************************************************************
consensus_10024#0 GGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATG 420
consensus_10024#1 GGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATG 263
************************************************************
consensus_10024#0 GCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATC 480
consensus_10024#1 GCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATC 323
************************************************************
consensus_10024#0 TCCGCCTGGAGCAACGCCGACGACTCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCC 540
consensus_10024#1 TCCGCCTGGAGCAACGCCGACGACGCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCC 383
************************ ***********************************
consensus_10024#0 GTCGACTCCAACGACTCGCTGGCCGCCGCCGCCGCCGCCAACGTCACCGTCGTTGCTGCT 600
consensus_10024#1 GTCGACTCCAACGACTCGCTGGCCGCCGCCGCCGCCGCCAACGTCACCGTCGTTGCTGCT 443
************************************************************
consensus_10024#0 CCGGCTCCCGCCCCCGTCCAGGCTCCGGCGCCAGCGTCCCCTTACGGCGACCTGGAGGAG 660
consensus_10024#1 CCGGCTCCCGCCCCCGTCCAGGTAT--GCACATATTTGCCATTTTTTTTAT--------- 492
********************** ** * * ** ** *
consensus_10024#0 GTGCTCCGGCGAGCGGCGACCAAGGACAGGACGGTGATCATGACGCAGATCAACCTGGCG 720
consensus_10024#1 -TGCTTCAATATGCTATGAACAAAACGAAT----TGATTGGCACCAATATCATTTCTGAA 547
**** * ** ** *** * **** ** * **** *
consensus_10024#0 TGGACGAAGCCGGGGTCGCTGCTGGACCTCTTCTTCGAGAGCTTCAGGCTCGGCGAGGGC 780
consensus_10024#1 GA---------------------------------------------------------- 549
consensus_10024#0 GGCGTGTCGCGGCTGCTGGACCACCTGGTGATCGTCACCATGGACCCGGCGGCGTACGAG 840
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 GGCTGCCAGGCGGTGCACCGCCATTGCTACTTCCTCCGCACCACCGGCGTCGACTACCGC 900
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 TCCGAAGATGTTCATGAGTAAGGACTACCTCGAGATGATGTGGGGTCGCAACAAGTTCCA 960
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 GCAGACCATCCTCGAGCTCGGATACAACTTCCTCTTCACGGATGTGGACGTGATGTGGTT 1020
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 CAGGGACCCGTTCAGGCACATATCAATGGGAGCAGACATCGCCATCTCCAGCGACGTGTT 1080
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 CATCGGCGACCCCTACAGCCTCGGCAACTTCCCCAATGGCGGCTTCCTGTTCGTGCGATC 1140
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 CAACGACAAGACCCTCGATTTCTACCGGAGTTGGCAGCAAGGGAGGTGGCGATTCTTCGG 1200
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 GAAGCACGAGCAGGACGTGTTCAACCTGATCAAGCACGAGCAGCAGGCGAAGCTGGGCAT 1260
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 CGCCATCCAGTTCCTCGACACCACCTACATCAGTGGCTTCTGTCAGCTCAGCAAGGATCT 1320
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 GAACAAGATCTGCACGCTCCATGCCAACTGCTGTGTTGGCCTCGGCGCCAAGATGCACGA 1380
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 CCTCCGAGGCGTCCTCGACGTCTGGAGGAACTACACGGCGGCGCCGCCCGACGAGCGGCG 1440
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 CTCGGGCAAGTTCCAGTGGAAGCTCCCCGGCATCTGCATCCACTGATCGATCGATCGATC 1500
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 ATATGTTCATATGCATATACACGCAGCGTTCAGCATTGCTGGATTGCCTTGGCTGCTTGG 1560
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 TTAATTTAGCTAGGCGATCGCTCGACTGCAGGCCGGTTAATTTCTCGAGCTGCCAAATTC 1620
consensus_10024#1 ------------------------------------------------------------
consensus_10024#0 TTTCTCCTCAATTATTAGTTGCGCCGATTC 1650
consensus_10024#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||