These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10024#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1650 fasta sequence [ATCAATCAGTGGGAGAGGATTAAGATGATGATGATCTGTCTCTTAGGCCTCCATCACGCCCGTTAATTCCCTTTCAGGCTGGTCTTCGCCTACCTGTTGCTGCTGCTCCTCCATCAAATACCCCCATTCCCTCTCCTCTCTGCTACTACTATACCTCCTTCTTGTTCCTTTCTTCAGACAAAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTAATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTGGTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGCGGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATGGCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATCTCCGCCTGGAGCAACGCCGACGACTCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCCGTCGACTCCAACGACTCGCTGGCCGCCGCCGC-CGCCGCCAAC-GTCACCGTCGTTGCTGCTCCGGCTCCCGCCCCCGTCCAGGCTCCGGCGCCAGCGTCCCCTTACGGCGACCTGGAGGAGGTGCTCCGGCGAGCGGCGACCAAGGACAGGACGGTGATCATGACGCAGATCAACCTGGCGTGGACGAAGCCGGGGTCGCTGCTGGACCTCTTCTTCGAGAGCTTCAGGCTCGGCGAGGGCGGCGTGTCGCGGCTGCTGGACCACCTGGTGATCGTCACCATGGACCCGGCGGCGTACGAGGGCTGCCAGGCGGTGCACCGCCATTGCTACTTCCTCCGCACCACCGGCGTCGACTACCGCTCC--GAAGATGTTCATGAGTAAGGACTACCTCGAGATGATGTGGGGTCGCAACAAGTTCCAGCAGACCATCCTCGAGCTCGGATACAACTTCCTCTTCACGGATGTGGACGTGATGTGGTTCAGGGACCCGTTCAGGCACATATCAATGGGAGCAGACATCGCCATCTCCAGCGACGTGTTCATCGGCGACCCCTACAGCCTCGGCAACTTCCCCAATGGCGGCTTCCTGTTCGTGCGATCCAACGACAAGACCCTCGATTTCTACCGGAGTTGGCAGCAAGGGAGGTGGCGATTCTTCGGGAAGCACGAGCAGGACGTGTTCAACCTGATCAAGCACGAGCAGCAGGCGAAGCTGGGCATCGCCATCCAGTTCCTCGACACCACCTACATCAGTGGCTTCTGTCAGCTCAGCAAGGATCTGAACAAGATCTGCACGCTCCATGCCAACTGCTGTGTTGGCCTCGGCGCCAAGATGCACGACCTCCGAGGCGTCCTCGACGTCTGGAGGAACTACACGGCGGCGCCGCCCGACGAGCGGCGCTCGGGCAAGTTCCAGTGGAAGCTCCCCGGCATCTGCATCCACTGATCGATCGATCGATCATATGTTCATATGCATATACACGCAGCGTTCAGCATTGCTGGATTGCCTTGGCTGCTTGGTTAATTTAGCTAGGCGATCGCTCGACTGCAGGCCGGTTAATTTCTCGAGCTGCCAAATTCTTTCTCCTCAATTATTAGTTGCGCCGATTC] [+] EMBL AK069826 [ATCAATCAGTGGGAGAGGATTAAGATGATGATGATCTGTCTCTTAGGCCTCCATCACGCCCGTTAATTCCCTTTCAGGCTGGTCTTCGCCTACCTGTTGCTGCTGCTCCTCCATCAAATACCCCCATTCCCTCTCCTCTCTGCTACTACTATACCTCCTTCTTGTTCCTTTCTTCAGACAAAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTAATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTGGTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGCGGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATGGCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATCTCCGCCTGGAGCAACGCCGACGACTCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCCGTCGACTCCAACGACTCGCTGGCCGCCGCCGC CGCCGCCAAC GTCACCGTCGTTGCTGCTCCGGCTCCCGCCCCCGTCCAGGCTCCGGCGCCGGCGTCCCCTTACGGCGACCTGGAGGAGGTGCTCCGGCGAGCGGCGACCAAGGACAGGACGGTGATCATGACGCAGATCAACCTGGCGTGGACGAAGCCGGGGTCGCTGCTGGACCTCTTCTTCGAGAGCTTCAGGCTCGGGGAGGGCGGCGTGTCGCGGCTGCTGGACCACCTGGTGATCGTCACCATGGACCCCGCGGCGTACGAGGGGTGCCAGGCGGTGCACCGCCATTGCTACTTCCTCCGCACCACCGGCGTCGACTACCGCTCC GAAGATGTTCATGAGCAAGGACTACCTCGAGATGATGTGGGGTCGCAACAAGTTTCAGCAGACCATCCTTGAGCTCGGCTACAACTTCCTCTTCACGGATGTGGACGTGATGTGGTTCAGGGACCCGTTCAGGCACA ] [+] EMBL BI306268 [ ctGCGGCCGCTCGCCGCCAAC GTCACCGTCGTTGCTGCTCCGGCTCCCGCCCCCGTCCAGGCTCCGGCGCCAGCGTCCCCTTACGGCGACCTGGAGGAGGTGCTCCGGCGAGCGGCGACCAAGGACAGGACGGTGATCATGACGCAGATCAACCTGGCGTGGACGAAGCCGGGGTCGCTGCTGGACCTCTTCTTCGAGAGCTTCAGGCTCGGCGAGGGCGGCGTGTCGCGGCTGCTGGACCACCTGGTGATCGTCACCATGGACCCGGCGGCGTACGAGGGCTGCCAGGCGGTGCACCGCCATTGCTACTTCCTCCGCACCACCGGCGTCGACTACCGCTCCGAGAAGATGTTCATGAGTAAGGACTACCTCGAGATGATGTGGGGTCGCAACAAGTTCCAGCAGACCATCCTCGAGCTCGGATACAACTTTCTCTTCACGGATGTGGACGTGATGTGGTTCAGGGACCCGTTCAGGCACATATCAATGGGAGCAGACATCGCCATCTCCAGCGAC ] [+] EMBL CB965640 [ atagcttCGGCGCTCGCCG CAACTGT A CGTCGTTGCTGCT CGGCT CCGCCCCCGT CAGGCT CGGCGCCAGCGNTCCCTTACGGCGACCTGGAGGAGGTGCTCCGGCGAGCGGCGACCAAGGACAGGACGGTGATCATGACGCAGATCAACCTGGCGTGGACGAAGCCGGGGTCGCTGATGGACCTCTTCTTCGAGAGCTTCAGG ] [+] EMBL CB966320 [ gCGG CGCCGCGCAC GTC CC CG TGCGCCGGCT CCGCCCCC CCAGGCTCCGGCGCCAGCGT CCTTACGGCGA CTGGAGGAGG GCTCCGGCGAGCGGCGACCAAGGACAGGACGG GATCATGACGCAGATCAACCTGGCG GGACGAAGCCGGGGTCGCTGCTGGACCTCTTCTTCGAGAGCTTCAGGCTCGGCGAGGGCGGCGTGTCGCGGCTGCTGG NCACCTGGTGATCGTCACCATGGACCCGGCGGCGTACGAGGGCTGCCAGGCGGTGCACCGCCATTGCTACTTCCTCCGCACCACCGGCGTCGACTACCGCTCCGAGAAGATGTTCATGAGTAAGGACTACCTCGAGATGATGTGGGGTCGCAACAAGTTCCAGCAGACCATCCTCGAGCTCGGATACAACTTTCTCTTCACGGATGTGGACGTGATGTGGTTCAGGGACCCGTTCAGGCACATATCAATGGGAGCAGACATCGCCATCTCCAGCGAC ] [+] EMBL CB000912 [ AACTTCCTCTTCACGGATGTGGACGTGATGTGGTTCAGGGACCCGTTCAGGCACATATCAATGGGAGCAGACATCGCCATCTCCAGCGACGTGTTCATCGGCGACCCCTACAGCCTCGGCAACTTCCCCAATGGCGGCTTCCTGTTCGTGCGATCCAACGACAAGACCCTCGATTTCTACCGGAGTTGGCAGCAAGGGAGGTGGCGATTCTTCGGGAAGCACGAGCAGGACGTGTTCAACCTGATCAAGCACGAGCAGCAGGCGAAGCTGGGCATCGCCATCCAGTTCCTCGACACCACCTACATCAGTGGCTTCTGTCAGCTCAGCAAGGATCTGAACAAGATCTGCACGCTCCATGCCAACTGCTGTGTTGGCCTCGGCGCCAAGATGCACGACCTCCGAGGCGTCCTCGACGTCTGGAGGAACTACACGGCGGCGCCGCCCGACGAGCGGCGCTCGGGCAAGTTCCAGTGGAAGCTCCCCGGCATCTGCATCCACTGATCGATCGATCGATCATATGTTCATATGCATATACACGCAGCGTTCAGCATTGCTGGATTGCCTTGGCTGCTTGGTTAATTTAGCTAGGCGATCGCTCGACTGCAGGCCGGTTAATTTCTCGAGCTGCCAAATTCTTTCTCCTCAATTATTAGTTGCGCCGATTC] [+] EMBL CB001074 [ TGGACGTGATGTGGTTCAGGGACCCGTTCAGGTACACATCAATGGGAGCAGACATCGCCATCTCCAGCGACGTGTTCATCGGCGACCCCTACAGCCTCGGCAACTTCCCCAATGGCGGCTTCCTGTTCGTGCGATCCAACGACAAGACCCTCGATTTCTACCGGAGTTGGCAGCAAGGGAGGTGGCGATTCTTCGGGAAGCACGAGCAGGACGTGTTCAACCTGATCAAGCACGAGCAGCAGGCGAAGCTGGGCATCGCCAT ] consensusID : consensus_10024#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CTTCTTGTTCCTTTCTTCAGACAAAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTAATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTGGTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGCGGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATGGCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATCTCCGCCTGGAGCAACGCCGACGACGCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCCGTCGACTCCAACGACTCGCTGGCCGCCGCCGCCGCCGCCAACGTCACCGTCGTTGCTGCTCCGGCTCCCGCCCCCGTCCAGGTATGCACATATTTGCCATTTTTTTTATTGCTTCAATATGCTATGAACAAAACGAATTGATTGGCACCAATATCATTTCTGAAGA] [+] EMBL AK106469 [CTTCTTGTTCCTTTCTTCAGACAAAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTAATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTGGTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGCGGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATGGCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATCTCCGCCTGGAGCAACGCCGACGACGCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCCGTCGACTCCAACGACTCGCTGGCCGCCGCCGCCGCCGCCAACGTCACCGTCGTTGCTGCTCCGGCTCCCGCCCCCGTCCAGGTATGCACATATTTGCCATTTTTTTTATTGCTTCAATATGCTATGAACAAAACGAATTGATTGGCACCAATATCATTTCTGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10024#0 ATCAATCAGTGGGAGAGGATTAAGATGATGATGATCTGTCTCTTAGGCCTCCATCACGCC 60 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 CGTTAATTCCCTTTCAGGCTGGTCTTCGCCTACCTGTTGCTGCTGCTCCTCCATCAAATA 120 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 CCCCCATTCCCTCTCCTCTCTGCTACTACTATACCTCCTTCTTGTTCCTTTCTTCAGACA 180 consensus_10024#1 -------------------------------------CTTCTTGTTCCTTTCTTCAGACA 23 *********************** consensus_10024#0 AAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTA 240 consensus_10024#1 AAGGCTTTGCCTTTCCTTCCTCTTCCACCATCCTGCCACAAGAAGCAAGAACCTCTCTTA 83 ************************************************************ consensus_10024#0 ATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTG 300 consensus_10024#1 ATTTGAGCAAGAAACCATTCGTCACATCAACGGAGGAAGCAGCTATAGTTTGATTGATTG 143 ************************************************************ consensus_10024#0 GTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGC 360 consensus_10024#1 GTTGATCGATCGATGCTGGGCGGCGGCAAGATGAAGGGTGGGGAGACGATGGGCGGCGGC 203 ************************************************************ consensus_10024#0 GGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATG 420 consensus_10024#1 GGCGGCAGCGGCAGCAGCAGCATTAGCCCGCTGGTGTCGTTCGTGCTGGGCGCCGCCATG 263 ************************************************************ consensus_10024#0 GCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATC 480 consensus_10024#1 GCCACCGTCTGCATCCTCTTCGTCATGTCCGCCAGCCCGGGACGCCGCCTCGCTGACATC 323 ************************************************************ consensus_10024#0 TCCGCCTGGAGCAACGCCGACGACTCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCC 540 consensus_10024#1 TCCGCCTGGAGCAACGCCGACGACGCGCCGCCGCTGCCGCTCCCGTTGCAGGACGCCGCC 383 ************************ *********************************** consensus_10024#0 GTCGACTCCAACGACTCGCTGGCCGCCGCCGCCGCCGCCAACGTCACCGTCGTTGCTGCT 600 consensus_10024#1 GTCGACTCCAACGACTCGCTGGCCGCCGCCGCCGCCGCCAACGTCACCGTCGTTGCTGCT 443 ************************************************************ consensus_10024#0 CCGGCTCCCGCCCCCGTCCAGGCTCCGGCGCCAGCGTCCCCTTACGGCGACCTGGAGGAG 660 consensus_10024#1 CCGGCTCCCGCCCCCGTCCAGGTAT--GCACATATTTGCCATTTTTTTTAT--------- 492 ********************** ** * * ** ** * consensus_10024#0 GTGCTCCGGCGAGCGGCGACCAAGGACAGGACGGTGATCATGACGCAGATCAACCTGGCG 720 consensus_10024#1 -TGCTTCAATATGCTATGAACAAAACGAAT----TGATTGGCACCAATATCATTTCTGAA 547 **** * ** ** *** * **** ** * **** * consensus_10024#0 TGGACGAAGCCGGGGTCGCTGCTGGACCTCTTCTTCGAGAGCTTCAGGCTCGGCGAGGGC 780 consensus_10024#1 GA---------------------------------------------------------- 549 consensus_10024#0 GGCGTGTCGCGGCTGCTGGACCACCTGGTGATCGTCACCATGGACCCGGCGGCGTACGAG 840 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 GGCTGCCAGGCGGTGCACCGCCATTGCTACTTCCTCCGCACCACCGGCGTCGACTACCGC 900 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 TCCGAAGATGTTCATGAGTAAGGACTACCTCGAGATGATGTGGGGTCGCAACAAGTTCCA 960 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 GCAGACCATCCTCGAGCTCGGATACAACTTCCTCTTCACGGATGTGGACGTGATGTGGTT 1020 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 CAGGGACCCGTTCAGGCACATATCAATGGGAGCAGACATCGCCATCTCCAGCGACGTGTT 1080 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 CATCGGCGACCCCTACAGCCTCGGCAACTTCCCCAATGGCGGCTTCCTGTTCGTGCGATC 1140 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 CAACGACAAGACCCTCGATTTCTACCGGAGTTGGCAGCAAGGGAGGTGGCGATTCTTCGG 1200 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 GAAGCACGAGCAGGACGTGTTCAACCTGATCAAGCACGAGCAGCAGGCGAAGCTGGGCAT 1260 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 CGCCATCCAGTTCCTCGACACCACCTACATCAGTGGCTTCTGTCAGCTCAGCAAGGATCT 1320 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 GAACAAGATCTGCACGCTCCATGCCAACTGCTGTGTTGGCCTCGGCGCCAAGATGCACGA 1380 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 CCTCCGAGGCGTCCTCGACGTCTGGAGGAACTACACGGCGGCGCCGCCCGACGAGCGGCG 1440 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 CTCGGGCAAGTTCCAGTGGAAGCTCCCCGGCATCTGCATCCACTGATCGATCGATCGATC 1500 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 ATATGTTCATATGCATATACACGCAGCGTTCAGCATTGCTGGATTGCCTTGGCTGCTTGG 1560 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 TTAATTTAGCTAGGCGATCGCTCGACTGCAGGCCGGTTAATTTCTCGAGCTGCCAAATTC 1620 consensus_10024#1 ------------------------------------------------------------ consensus_10024#0 TTTCTCCTCAATTATTAGTTGCGCCGATTC 1650 consensus_10024#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||