Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10025 cluster # 10025       Sequences # 7       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10025#0 length = 1192 sequences # 7  
consensusID : consensus_10025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1192
fasta sequence 
                              [AGCACTTCTTCCCCCGGCCCAAGGCCGCCGCCCCACGCAACACCACCTCCTTCATCATCCGTGCCAAGCGCGCCGGTGGCATCGCCTCCCTCGTCTCCCCCTCCCCTGTTACCCCCGCCGTTCTCCCCACCCCACGCCTCTCCCCCTCCCGCGAGGGCCTCTCCGACATGGCTCAGGCGCAGTGGGGCGTCGATGGCTATGGCTCCATGAAGGGCCTCATCCGCCTCCGCACCTCCCCTCACCCCGCCAACCCCTCCGATGACGACGATGATGCCAACTCCAGCGGCAGTGACGTCGAGGAGCATGTCGAGGTGGAGCGCCGCCTCGACCACGATCTCAGCAGGTTTGAGATGGTCTACCCTGCCAGGGGTGACGGTGTCTTCTTCGAGGAGGAGGATGACTATGAGTATGACCAGGAAGCCCATGTGGCTCGCCTCGAGGAGGAGAACCTCACCTTGAAGGAGAGGCTCTTTTTGATGGAGCAGGAGCTTGGCGACATGAGGCGCCGCCTGGAGGCAC-TCGAG-TC-GCGT-TTTGCAGGGACTGATGGTATGCCTATTGAGAATTCAGATGC-AGTTGCAGTTGA-CCATGACAAGGAGATGGCTCATCCCATA-CTTGTTCAGAGGGATGATCT-TAGGACTGAGATTGCTGCTGATGCAGCAGGGTCAGACAAGGCTAGTGCACAAGACAATGCAGAGGAGGTTGCTGATGCAGCAGTGTCAGAGAAGATCGTGCAAGACAATGCAGATGTTGTAGTTG-CAGGGTCAGAGAGGACTGGCGAAGAGATCGGGGTTGATGCTTCGGAGATGGATTGATGGGAGATGGACACTGGAATGCAATAGCGGTTATCAGTACTGTACATACATAATTGTCGATGACAGATTGAGGCCGCGTGATGTGGACTTGTTTTGGGAGGCTTACAATTGTAT-GTTGTCGCATAACAAGTGGATCATCGTATTTACAATGTAATATGT-TTCTACCATTCTGTGCTATCTTTGGTGTTTCTTTGCGTATTTGTTATGATGATACCACACAGCACAACTTGTAGTAGTTCTTACCTTCTGCTGCTGCTGCTGAAAGAGGTAGAAGCGACTAGATGAATTTGTTACTACATCAACTATTAATGTCATTATAATGGTATCAGATGGTGTCATGAACCTGTTACTTAATTATAGATAGCACTCATGAAGCTATT]

[+] EMBL AK058645             [AGCACTTCTTCCCCCGGCCCAAGGCCGCCGCCCCACGCAACACCACCTCCTTCATCATCCGTGCCAAGCGCGCCGGTGGCATCGCCTCCCTCGTCTCCCCCTCCCCTGTTACCCCCGCCGTTCTCCCCACCCCACGCCTCTCCCCCTCCCGCGAGGGCCTCTCCGACATGGCTCAGGCGCAGTGGGGCGTCGATGGCTATGGCTCCATGAAGGGCCTCATCCGCCTCCGCACCTCCCCTCACCCCGCCAACCCCTCCGATGACGACGATGATGCCAACTCCAGCAGCAGTGACGTCGAGGAGCATGTCGAGGTGGAGCGCCGCCTCGACCACGATCTCAGCAGGTTTGAGATGGTCTACCCTGCCAGGGGTGACGGTGTCTTCTTCGAGGAGGAGGATGACTATGAGTATGACCAGGAAGCCCATGTGGCTCGCCTCGAGGAGGAGAACCTCACCTTGAAGGAGAGGCTCTTTTTGATGGAGCAGGAGCTTGGCGACATGAGGCGCCGCCTGGAGGCAC TCGAG TC GCGT TTTGCAGGGACTGATGGTATGCCTATTGAGAATTCAGATGC AGTTGCAGTTGA CCATGACAAGGAGATGGCTCATCCCATA CTTGTTCAGAGGGATGATCT TAGGACTGAGATTGCTGCTGATGCAGCAGGGTCAGACAAGGCTAGTGCACAAGACAATGCAGAGGAGGTTGCTGATGCAGCAGTGTCAGAGAAGATCGTGCAAGACAATGCAGATGTTGTAGTTG CAGGGTCAGAGAGGACTGGCGAAGAGATCGGGGTTGATGCTTCGGAGATGGATTGATGGGAGATGGACACTGGAATGCAATAGCGGTTATCAGTACTGTACATACATAATTGTCGATGACAGATTGAGGCCGCGTGATGTGGACTTGTTTTGGGAGGCTTACAATTGTAT GTTGTCGCATAACAAGTGGATCATCGTATTTACAATGTAATATGT TTCTACCATTCTGTGCTATCTTTGGTGTTTCTTTGCGTATTTGTTATGATGATACCACACAGCACAACTTGTAGTAGTTCTTACCTTCTGCTGCTGCTGCTGAAAGAGGTAGAAGCGACTAGATGAATTTGTTACTACATCAACTATTAATGTCATTATAATGGTATCAGATGGTGTCATGAACCTGTTACTTAATTATAGATAGCACTCATGAAGCTATT]
[+] EMBL AK072277             [AGCACTTCTTCCCCCGGCCCAAGGCCGCCGCCCCACGCAACACCACCTCCTTCATCATCCGTGCCAAGCGCGCCGGTGGCATCGCCTCCCTCGTCTCCCCCTCCCCTGTTACCCCCGCCGTTCTCCCCACCCCACGCCTCTCCCCCTCCCGCGAGGGCCTCTCCGACATGGCTCAGGCGCAGTGGGGCGTCGATGGCTATGGCTCCATGAAGGGCCTCATCCGCCTCCGCACCTCCCCTCACCCCGCCAACCCCTCCGATGACGACGATGATGCCAACTCCAGCGGCAGTGACGTCGAGGAGCATGTCGAGGTGGAGCGCCGCCTCGACCACGATCTCAGCAGGTTTGAGATGGTCTACCCTGCCAGGGGTGACGGTGTCTTCTTCGAGGAGGAGGATGACTATGAGTATGACCAGGAAGCCCATGTGGCTCGCCTCGAGGAGGAGAACCTCACCTTGAAGGAGAGGCTCTTTTTGATGGAGCAGGAGCTTGGCGACATGAGGCGCCGCCTGGAGGCAC TCGAG TC GCGT TTTGCAGGGACTGATGGTATGCCTATTGAGAATTCAGATGC AGTTGCAGTTGA CCATGACAAGGAGATGGCTCATCCCATA CTTGTTCAGAGGGATGATCT TAGGACTGAGATTGCTGCTGATGCAGCAGGGTCAGACAAGGCTAGTGCACAAGACAATGCAGAGGAGGTTGCTGATGCAGCAGTGTCAGAGAAGATCGTGCAAGACAATGCAGATGTTGTAGTTG CAGGGTCAGAGAGGACTGGCGAAGAGATCGGGGTTGATGCTTCGGAGATGGATTGATGGGAGATGGACACTGGAATGCAATAGCGGTTATCAGTACTGTACATACATAATTGTCGATGACAGATTGAGGCCGCGTGATGTGGACTTGTTTTGGGAGGCTTACAATTGTAT GTTGTCGCATAACAAGTGGATCATCGTATTTACAATGTAATA                                                                                                                                                                                                                                 ]
[+] EMBL AK100140             [AGCACTTCTTCCCCCGGCCCAAGGCCGCCGCCCCACGCAACACCACCTCCTTCATCATCCGTGCCAAGCGCGCCGGTGGCATCGCCTCCCTCGTCTCCCCCTCCCCTGTTACCCCCGCCGTTCTCCCCACCCCACGCCTCTCCCCCTCCCGCGAGGGCCTCTCCGACATGGCTCAGGCGCAGTGGGGCGTCGATGGCTATGGCTCCATGAAGGGCCTCATCCGCCTCCGCACCTCCCCTCACCCCGCCAACCCCTCCGATGACGACGATGATGCCAACTCCAGCGGCAGTGACGTCGAGGAGCATGTCGAGGTGGAGCGCCGCCTCGACCACGATCTCAGCAGGTTTGAGATGGTCTACCCTGCCAGGGGTGACGGTGTCTTCTTCGAGGAGGAGGATGACTATGAGTATGACCAGGAAGCCCATGTGGCTCGCCTCGAGGAGGAGAACCTCACCTTGAAGGAGAGGCTCTTTTTGATGGAGCAGGAGCTTGGCGACATGAGGCGCCGCCTGGAGGCAC TCGAG TC GCGT TTTGCAGGGACTGATGGTATGCCTATTGAGAATTCAGATGC AGTTGCAGTTGA CCATGACAAGGAGATGGCTCATCCCATA CTTGTTCAGAGGGATGATCT TAGGACTGAGATTGCTGCTGATGCAGCAGGGTCAGACAAGGCTAGTGCACAAGACAATGCAGAGGAGGTTGCTGATGCAGCAGTGTCAGAGAAGATCGTGCAAGACAATGCAGATGTTGTAGTTG CAGGGTCAGAGAGGACTGGCGAAGAGATCGGGGTTGATGCTTCGGAGATGGATTGATGGGAGATGGACACTGGAATGCAATAGCGGTTATCAGTACTGTACATACATAATTGTCGATGACAGATTGAGGCCGCGTGATGTGGACTTGTTTTGGGAGGCTTACAATTGTAT GTTGTCGCATAACAAGTGGATCATCGTATTTACAATGTAATA                                                                                                                                                                                                                                 ]
[-] EMBL CB673089             [                                                                                                                                                                                                                                                                              ATGCCAACTCCAGCGGCAGTGACGTCGAGGAGCATGTGGAGGTGGAGCTCCGCCTCGACCACGATATCAGCAGGTTTGTGATGGTCTACCCTGCCAGGGGTGTCGTTGTCTTCTTGGAGGAGGAGGATGACTATGAGTATGACCAGGAAGCCCATGTGGTTCGCCTGGAGGAGGAGACCCTCACCTTGAAGGTGAGGCTCTTTTTGATGGAGCAGGAGCTTGGCGACATGAGGCGCCGCCTGGAGGCAC TGGAG TC GCGT TTTGCAGGGACTGATGGTATGCCTATTGAGAATTCAGATGC AGTTGCAGTTGA CCATGACAAGGAGATGGCTCATCCCATA CTTGTTCAGAGGGATGATCT TAGGACTGAGATTGCTGCTGATGCAGCAGGGTCAGACAAGGCTAGTGCACAAGACAATGCAGAGGAGGTTGCTGATGCAGCAGTGTCAGAGAAGATCGTGCAAGCCAATGCAGATGTTGTAGTTG CAGGGTCAGAGAGGACTGGCGAAGAGATCGGGGTTGATGCTTCGGAGATGGATTGATGGGAGATGGACACTGGAATGCAATAGCGGTTATCAGTCCTGTACATACATAATTGTCGATGACAGATTGAGGCCGCGTGATGTGGACTTGTTTTGGGAGGCTTACAATTGTAT GTTG                                                                                                                                                                                                                                                                       ]
[-] EMBL CB655274             [                                                                                                                                                                                                                                                                                    ACTCCAGCGGCAGTGACGTCGAGGAGCATGTCGAGGTGGAGCGCCGCCTCGACCACGATCTCAGCAGGTTTGAGATGGTCTACCCTGCCAGGGGTGACGGTGTCTTTTTCGAGGAGGAGGATGACTATGAGTATGACCAGGAAGCCCATGTGGCTCGCCTCGAGGAGGAGAACCTCACCTTGAAGGAGAGGCTCTTTTTGATGGAGCAGGAGCTTGGCGACATGAGGCGCCGCCTGGAGGCAC TCGAG TC GCGT TTTGCAGGGACTGATGGTATGCCTATTGAGAATTCAGATGC AGTTGCAGTTGA CCATGACAAGGAGATGGCTCATCCCATA CTTGTTCAGAGGGATGATCT TAGGACTGAGATTGCTGCTGATGCAGCAGGGTCAGACAAGGCTAGTGCACAAGACAATGCAGAGGAGGTTGCTGATGCAGCAGTGTCAGAGAAGATCGTGCAAGACAATGCAGATGTTGTAGTTG CAGGGTCAGAGAGGACTGGCGAAGAGATCGGGGTTGATGCTTCGGAGATGGATTGATGGGAGATGGACACTGGAATGCAATAGCGGTTATCAGTACTGTACATACATAATTGTCGATGACAGATTGAGGCCGCGTGATGTGGACTTGTTTTGGGAGGCTTACAATTGTAT GTTGTCGCATAACAAGTGGATCATCGTATTGACAATGTAATATGT TTCTACCATTCTGTGCTAaaaaaaaag                                                                                                                                                                                                  ]
[-] EMBL CB646155             [                                                                                                                                                                                                                                                                                                                                                                                                                            CCAGGAAGCCCATGTGGCTCGCCTCGAGGAGGAGAACCTCACCTTGAAGGAGAGGCTCTTTTTGATGGAGCAGGAGCTTGGCGACATGAGGCGCCGCCTGGAGGCAC TCGAG TC GCGT TTTGCAGGGACTGATGGTATGCCTATTGAGAATTCAGATGC AGTTGCAGTTGA CCATGACAAGGAGATGGCTCATCCCATA CTTGTTCAGAGGGATGATCT TAGGACTGAGATTGCTGCTGATGCAGCAGGGTCAGACAAGGCTAGTGCACAAGACAATGCAGAGGAGGTTGCTGATGCAGCAGTGTCAGAGAAGATCGTGCAAGACAATGCAGATGTTGTAGTTG CAGGGTCAGAGAGGACTGGCGAAGAGATCGGGGTTGATGCTTCGGAGATGGATTGATGGGAGATGGACACTGGAATGCAATAGCGGTTATCAGTACTGTACATACATAATTGTCGATGACAGATTGAGGCCGCGTGATGTGGACTTGTTTTGGGAGGCTTACAATTGTAT GTTGTCGCATAACAAGTGGATCATCGTATTTACAATGTAATATGT TTCTACCATTCTGTGCTATCTTTGGTGTTTCTTTGCGTATTTGTTATGATGATACCACACAGCACAACTTGTAGTAGTTCTTACCTTCTGCTGCTGCTGCTGAAAGAGGTAGAAGCGACTAGATGAATTTGTTACTACATCAACTATTAATGTCCTTTTAAAGGTATCAGA                                                  ]
[+] EMBL BM421262             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ccnCTGGAGGCACTTCGAGTTCGGCGTNTTTGCAGGGACTGATGGTATGCCTATTGAGAATTCAGATGCAAGTTGCAGTTGAGCCATGACAAGGAGATGGCTCATCCCATATCTTGTTCAGAGGGATGATCTNTAGGACTGAGATTGCTGCTGATGCAGCAGGGTCAGACAAGGCTAGTGCACAAGACAATGCAGAGGA GTTGCTGATGCAGCAGTGTCAGAGAAGATCGTGCAAGACAATGCAGATGTTGTAGTTGCCAGGGTCAGAGAGGACTGGCGAAGAGATCGGGGTTNATGCTTCGGAGATGGATTGATGGGAGATGGACACTGGAATGCAATAGCGGTTATCAGTACTGTACATACATAATTGTTGATGACAGATTGAGGCCGCGTGATGTGGACTTGTTTTGGGAGGCTTACAATTGTATGGTTGTCGCATAACAAGTGGATCATCGTATTTACAANGTAATATGTGTTCTACCATTCTGTGCTAaaaaaa                                                                                                                                                                                                     ]




>consensus_10025#0
AGCACTTCTTCCCCCGGCCCAAGGCCGCCGCCCCACGCAACACCACCTCCTTCATCATCC
GTGCCAAGCGCGCCGGTGGCATCGCCTCCCTCGTCTCCCCCTCCCCTGTTACCCCCGCCG
TTCTCCCCACCCCACGCCTCTCCCCCTCCCGCGAGGGCCTCTCCGACATGGCTCAGGCGC
AGTGGGGCGTCGATGGCTATGGCTCCATGAAGGGCCTCATCCGCCTCCGCACCTCCCCTC
ACCCCGCCAACCCCTCCGATGACGACGATGATGCCAACTCCAGCGGCAGTGACGTCGAGG
AGCATGTCGAGGTGGAGCGCCGCCTCGACCACGATCTCAGCAGGTTTGAGATGGTCTACC
CTGCCAGGGGTGACGGTGTCTTCTTCGAGGAGGAGGATGACTATGAGTATGACCAGGAAG
CCCATGTGGCTCGCCTCGAGGAGGAGAACCTCACCTTGAAGGAGAGGCTCTTTTTGATGG
AGCAGGAGCTTGGCGACATGAGGCGCCGCCTGGAGGCACTCGAGTCGCGTTTTGCAGGGA
CTGATGGTATGCCTATTGAGAATTCAGATGCAGTTGCAGTTGACCATGACAAGGAGATGG
CTCATCCCATACTTGTTCAGAGGGATGATCTTAGGACTGAGATTGCTGCTGATGCAGCAG
GGTCAGACAAGGCTAGTGCACAAGACAATGCAGAGGAGGTTGCTGATGCAGCAGTGTCAG
AGAAGATCGTGCAAGACAATGCAGATGTTGTAGTTGCAGGGTCAGAGAGGACTGGCGAAG
AGATCGGGGTTGATGCTTCGGAGATGGATTGATGGGAGATGGACACTGGAATGCAATAGC
GGTTATCAGTACTGTACATACATAATTGTCGATGACAGATTGAGGCCGCGTGATGTGGAC
TTGTTTTGGGAGGCTTACAATTGTATGTTGTCGCATAACAAGTGGATCATCGTATTTACA
ATGTAATATGTTTCTACCATTCTGTGCTATCTTTGGTGTTTCTTTGCGTATTTGTTATGA
TGATACCACACAGCACAACTTGTAGTAGTTCTTACCTTCTGCTGCTGCTGCTGAAAGAGG
TAGAAGCGACTAGATGAATTTGTTACTACATCAACTATTAATGTCATTATAATGGTATCA
GATGGTGTCATGAACCTGTTACTTAATTATAGATAGCACTCATGAAGCTATT

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)