Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 10032 cluster # 10032       Sequences # 7       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10032#0 length = 1764 sequences # 6  
consensus_10032#1 length = 956 sequences # 1  

consensusID : consensus_10032#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1764
fasta sequence
                              [TTGCGTGGCGTGTCGACTTCCAAGTCTTCCGCCTTCGTTGGCCCCACCAGTCAGTGACCCAGTCAATCTCCGGCGATGGGGGCCGGAATGAGCAGC-GGCCGGC-GGCCGAGCTTCTAC-GGCGGCGGCGGCGGCGGCGGGGTCGGCCGGCCGAGAGGGATGCT-GCCCCTGCTGGCGCTGCAGGTGCTGCTCGAGTACGGCCGCGCGGGCGCCAGCCGGCCCCCCGTGACGGCGGCGCTGCTCGCCGCCAACGCGCTGCTGTACCTCCGCCCAGGCTCCCTCGACGCGCTCCTCCCTTCGCTCAACCGCGTCGCCTTCAACCCTCACCTCATCATTCACTACTGTGACCTGACACGCTTCTTCCTGTCGGCTTTCTACCACTTGAGCGAAACTCACTTCTTCTTCAACATGTCATCTCTCTTATGGAAGGGCATCCAGCTTGAAACATCCATGGGTAGTGTTGAGTTTGCCTCTATGGCTGCTGCATTGCTTGGCATGTCACAAGGCATCACACTACTTTTGTCCAAAGGTTTACTCCTGTTCGGCAATGATGAGGCTTATTATGATCAATATGCTGTTGGATTCTCTGGAGTACTATTTGGTATGAAGGTCGTGCTGAATGCCTGGTCAGACGATTATGTCTTTCTTCATGGGGTGGTTATTCCAGCAAAATATGCTGCCTGGGCTGAATTACTCCTCATTCAGGCTTTTATTCCTGGGACATCTCTTATTGGCCATCTCGGTGGAATACTTGCTGGATTGGCCTACCTTTGGCTTAAGCGATCATTCTCTGGGCCAGACCCGCTTTCTCTTCTGATTTCAGGAATTGGAAAAGCTGTGAGATGGCCAGTAGGGTTTGTTCAGAAGCTTTTCAGGT-CTGG-CCGT-CCTCA--GGGTTACA-CCCCAAGTCGAGGCAGAGTTGGCCGT-GGTTCAG-CAAGAGAGAATGGTCGAGGTATATGGAGATGCTCAGCC-TGCACTTATGACAACTCGCCGTCGACAGATATCTGTGAAATGTGCAGCAGTGCACGTGAGGACCATGCTTTTTCTCATAGACAGCACCTCCAAGCTGGGGGGAATGGGGAGCCA-TCGGTTGAGGAGATTCGCCGTAGGAGGCTCGAGAGATTTTCCAGATGACGTGAACCATTGCTCTAGCAAATCAAGTTTTTTGTGGTACAGGAAGGAAGCTAATTCTCATGAAAACTGAAAAATGCCCTTTCATGCCTTCCTGTGCTATTGCTACATAGCTTCAGAACATTCTTGTGTCCAATGAATACTGAAGTTTTAACTTGCCTATTCAAGTTTATTGCTACTAAGTATTTAGCTCCATTCTTTAGGAT-CCCCTCATAATATATCTTTAGGTTGTCTCATCAGCTATGCCTTCAAAGTATGTAATTATGTCCTTTTTTCTGGATAAATGGAGTATTACAGTAGTTGACTTCGGCATATAAAAAAAAAGCTGTATGTCTGTCACCTAGTACATGTTTGGCCGTTATTTGCAGGCCTACAGAGCATTCCTTTTCACGGTTCTTTTAGCACTTGCAGTGTGTGAACGGAAATCTGCATCATCAACATCAGGTAGAAGTGGTGAGAATTCCTTTTCAAAGTGGCAGCTTATTAAGGATCCGGTTGCATGTCCAAATGTTGTGAATAGAAGCAGACGAGTTGTTGTCTCTTTACTTTCTTCTTGTCTGATCTTGTTGTCTTCAGAATAGAAGCAGACGAGTTGTTGGAATCATGGTTGGTTCCAGACATTTGAGGGCATCAATTCCA]

[+] EMBL AK064158             [TTGCGTGGCGTGTCGACTTCCAAGTCTTCCGCCTTCGTTGGCCCCACCAGTCAGTGACCCAGTCAATCTCCGGCGATGGGGGCCGGAATGAGCAGC GGCCGGC GGCCGAGCTTCTAC GGCGGCGGCGGCGGCGGCGGGGTCGGCCGGCCGAGAGGGATGCT GCCCCTGCTGGCGCTGCAGGTGCTGCTCGAGTACGGCCGCGCGGGCGCCAGCCGGCCCCCCGTGACGGCGGCGCTGCTCGCCGCCAACGCGCTGCTGTACCTCCGCCCAGGCTCCCTCGACGCGCTCCTCCCTTCGCTCAACCGCGTCGCCTTCAACCCTCACCTCATCATTCACTACTGTGACCTGACACGCTTCTTCCTGTCGGCTTTCTACCACTTGAGCGAAACTCACTTCTTCTTCAACATGTCATCTCTCTTATGGAAGGGCATCCAGCTTGAAACATCCATGGGTAGTGTTGAGTTTGCCTCTATGGCTGCTGCATTGCTTGGCATGTCACAAGGCATCACACTACTTTTGTCCAAAGGTTTACTCCTGTTCGGCAATGATGAGGCTTATTATGATCAATATGCTGTTGGATTCTCTGGAGTACTATTTGGTATGAAGGTCGTGCTGAATGCCTGGTCAGACGATTATGTCTTTCTTCATGGGGTGGTTATTCCAGCAAAATATGCTGCCTGGGCTGAATTACTCCTCATTCAGGCTTTTATTCCTGGGACATCTCTTATTGGCCATCTCGGTGGAATACTTGCTGGATTGGCCTACCTTTGGCTTAAGCGATCATTCTCTGGGCCAGACCCGCTTTCTCTTCTGATTTCAGGAATTGGAAAAGCTGTGAGATGGCCAGTAGGGTTTGTTCAGAAGCTTTTCAGGT CTGG CCGT CCTCA  GGGTTACA CCCCAAGTCGAGGCAGAGTTGGCCGT GGTTCAG CAAGAGAGAATGGTCGAGGTATATGGAGATGCTCAGCC TGCACTTATGACAACTCGCCGTCGACAGATATCTGTGAAATGTGCAGCAGTGCACGTGAGGACCATGCTTTTTCTCATAGACAGCACCTCCAAGCTGGGGGGAATGGGGAGCCA TCGGTTGAGGAGATTCGCCGTAGGAGGCTCGAGAGATTTTCCAGATGACGTGAACCATTGCTCTAGCAAATCAAGTTTTTTGTGGTACAGGAAGGAAACTAATTCTCATGAAAACTGAAAAATGCCCTTTCATGCCTTCCTGTGCTATTGCTACATAGCTTCAGAACATTCTTGTGTCCAATGAATACTGAAGTTTTAACTTGCCTATTCAAGTTTATTGCTACTAAGTATTTAGCTCCATTCTTTAGGAT CCCCTCATAATATATCTTTAGGTTGTCTCATCAGCTATGCCTTCAAAGTATGTAATTATGTCCTTTTTTCTGGATAAATGGGGTATTACAGTAGT                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF304274             [       GCGTGTCGACTTCCAAGTCTTCCGCCTTCGTTGGCCCCACCAGTCAGTGACCCAGTCAATCTCCGGCGATGGGGGCCGGAATGAGCAGC GGCCGGC GGCCGAGCTTCTAC GGCGGCGGCGGCGGCGGCGGGGTCGGTCGGCCGAGAGGGATGCT GCCCCTGCTGGCGCTGCAGGTGCTGCTCGAGTACGGCCGCGCGGGCGCCAGCCGGCCCCCCGTGACGGCGGCGCTGCTCGCCGCCAACGCGCTGCTGTACCTCCGCCCAGGCTCCCTCGACGCGCTCCTCCCTTCGCTCAACCGCGTCGCCTTCAACCCTCACCTCATCATTCACTACTGTGACCTGACACGCTTCTTCCTGTCGGCTTTCTACCACTTGAGCGAAACTCACTTCTTCTTCAACATGTCATCTCTCTTATGGAAGGGCATCCAGCTTGAAACATCCATGGGTAGTGTTGAGTTTGCCTCTATGGTTGCTGCATTGCTTGGCATGTCACAAGGCATCACACTACTTTTGTCCAAAGGTTTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU166950             [                  TCCAAGTCTTCCGCCTTCGTTGGCCCCACCAGTCAGTGACCCAGTCAATCTCCGGCGATGGGGGCCGGAATGAGCAGCAGGCCGGCAGGCCGAGCTTCTACAGGCGGCGGCGGCGGCGGCGGGGTCGGCCGGCCGAGAGGGATGCTAGCCCCTGCTGGCGCTGCAGGTGCTGCTCGAGTACGGCCGCGCGGGCGCCAGCCGGCCCCCCGTGACGGCGGCGCTGCTCGCCGCCAACGCGCTGCTGTACCTCCGCCCAGGCTCCCTCGACGCGCTCCTCCCTTCGCTCAACCGCGTCGCCTTCAACCCTCACCTNATCATTCACTACTGTGACCTGACACGCTTCTTCCTGTCGGCTTTCTACCACTTGAGCGAAACTCACTTCTTCTTNAACATGTCATCTCTCTTATGGAAGGGCATNCAGCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BI795295             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTCAGGTGCTGGCCCGTCCCTCAAGGGGTTACACCCCCAAGTCGAGGCAGAGTTGGCCGTGGGTTCAGCCAAGAGAGAAT GTCGAGGTATATGGAGATGCTCAGCCATGCACTTATGACAACTCGCCGTCGACAGATATCTGTGAAATGTGCAGCAGTGCACGTGAGGACCATGCTTTTTCTCGTAGACAGCACCTCCAAGCTGGGGGGAATGGGGAGCCACTCGGTTGAGGAGATTCGCCGTAGGAGGCTCGAGAGATTTTCCAGATGACGTGAACC TTGCTCTAGC AATCAAGTTTTTTGTGGTACAGGAAGGAAGCTAATTCTCATGAAAACTGAAAAATGCCCTTTCATGCCTTCCTGTGCTATTGCTACATAGCTTCAGAACATTCTTGTGTCCAATGAATACTGAAGTTTTAACTTGCCTATTCAAGTTTATTGCTACTAAGTATTTAGCTCCATTCTTTAGGAT CCCCTCATAATATATCTTTAGGTTGTCTCATCAGCTATGCCTTC AAGTATGTAATTATGTCCTTTTTTCTGGATAAATGGAGTATTACAGTAGTTGAC  AGGCAAAAAA                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU166951             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTGCACGTGAGGACCATGCTTTTTCTCATAGACAGCACCTCCAAGCTGGGGGGAATGGGGAGCCA TCGGTTGAGGAGATTCGCCGTAGGAGGCTCGAGAGATTTTCCAGATGACGTGAACCATTGCTCTAGCAAATCAAGTTTTTTGTGGTACAGGAAGGAAGCTAATTCTCATGAAAACTGAAAAATGCCCTTTCATGCCTTCCTGTGCTATTGCTACATAGCTTCAGAACATTCTTGTGTCCAATGAATACTGAAGTTTTAACTTGCCTATTCAAGTTTATTGCTACTAAGTATTTAGCTCCATTCTTTAGGAT CCCCTCATAATATATCTTTAGGTTGTCTCATCAGCTATGCCTTCAAAGTATGTAATTATGTCCTTTTTTCTGGATAAATGGAGTATTACAGTAGTTGACTTCGGCATATAAAAAAAAA                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CF303299             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGCCTTCCTGTGCTATTGCTACATAGCTTCAGAACATTCTTGTGTCCAATGAATACTGAAGTTTTAACTTGCCTATTCAAGTTTATTGCTACTAAGTATTTAGCTCCATTCTTTAGGATCCCCCTCATAATATATCTTTAGGTTGTCTCATCAGCTATGCCTTCAAAGTATGTAATTATGTCCTTTTTTCTGGATAAATGGAGTATTACAGTAGTTGACTTCGGCATATAATACCCCTGCTGTATGTCTGTCACCTAGTACATGTTTGGCCGTTATTTGCAGGCCTACAGAGCATTCCTTTTCACGGTTCTTTTAGCACTTGCAGTGTGTGAACGGAAATCTGCATCATCAACATCAGGTAGAAGTGGTGAGAATTCCTTTTCAAAGTGGCAGCTTATTAAGGATCCGGTTGCATGTCCAAATGTTGTGAATAGAAGCAGACGAGTTGTTGTCTCTTTACTTTCTTCTTGTCTGATCTTGTTGTCTTCAGAATAGAAGCAGACGAGTTGTTGGAATCATGGTTGGTTCCAGACATTTGAGGGCATCAATTCCA]


>consensus_10032#0 TTGCGTGGCGTGTCGACTTCCAAGTCTTCCGCCTTCGTTGGCCCCACCAGTCAGTGACCC AGTCAATCTCCGGCGATGGGGGCCGGAATGAGCAGCGGCCGGCGGCCGAGCTTCTACGGC GGCGGCGGCGGCGGCGGGGTCGGCCGGCCGAGAGGGATGCTGCCCCTGCTGGCGCTGCAG GTGCTGCTCGAGTACGGCCGCGCGGGCGCCAGCCGGCCCCCCGTGACGGCGGCGCTGCTC GCCGCCAACGCGCTGCTGTACCTCCGCCCAGGCTCCCTCGACGCGCTCCTCCCTTCGCTC AACCGCGTCGCCTTCAACCCTCACCTCATCATTCACTACTGTGACCTGACACGCTTCTTC CTGTCGGCTTTCTACCACTTGAGCGAAACTCACTTCTTCTTCAACATGTCATCTCTCTTA TGGAAGGGCATCCAGCTTGAAACATCCATGGGTAGTGTTGAGTTTGCCTCTATGGCTGCT GCATTGCTTGGCATGTCACAAGGCATCACACTACTTTTGTCCAAAGGTTTACTCCTGTTC GGCAATGATGAGGCTTATTATGATCAATATGCTGTTGGATTCTCTGGAGTACTATTTGGT ATGAAGGTCGTGCTGAATGCCTGGTCAGACGATTATGTCTTTCTTCATGGGGTGGTTATT CCAGCAAAATATGCTGCCTGGGCTGAATTACTCCTCATTCAGGCTTTTATTCCTGGGACA TCTCTTATTGGCCATCTCGGTGGAATACTTGCTGGATTGGCCTACCTTTGGCTTAAGCGA TCATTCTCTGGGCCAGACCCGCTTTCTCTTCTGATTTCAGGAATTGGAAAAGCTGTGAGA TGGCCAGTAGGGTTTGTTCAGAAGCTTTTCAGGTCTGGCCGTCCTCAGGGTTACACCCCA AGTCGAGGCAGAGTTGGCCGTGGTTCAGCAAGAGAGAATGGTCGAGGTATATGGAGATGC TCAGCCTGCACTTATGACAACTCGCCGTCGACAGATATCTGTGAAATGTGCAGCAGTGCA CGTGAGGACCATGCTTTTTCTCATAGACAGCACCTCCAAGCTGGGGGGAATGGGGAGCCA TCGGTTGAGGAGATTCGCCGTAGGAGGCTCGAGAGATTTTCCAGATGACGTGAACCATTG CTCTAGCAAATCAAGTTTTTTGTGGTACAGGAAGGAAGCTAATTCTCATGAAAACTGAAA AATGCCCTTTCATGCCTTCCTGTGCTATTGCTACATAGCTTCAGAACATTCTTGTGTCCA ATGAATACTGAAGTTTTAACTTGCCTATTCAAGTTTATTGCTACTAAGTATTTAGCTCCA TTCTTTAGGATCCCCTCATAATATATCTTTAGGTTGTCTCATCAGCTATGCCTTCAAAGT ATGTAATTATGTCCTTTTTTCTGGATAAATGGAGTATTACAGTAGTTGACTTCGGCATAT AAAAAAAAAGCTGTATGTCTGTCACCTAGTACATGTTTGGCCGTTATTTGCAGGCCTACA GAGCATTCCTTTTCACGGTTCTTTTAGCACTTGCAGTGTGTGAACGGAAATCTGCATCAT CAACATCAGGTAGAAGTGGTGAGAATTCCTTTTCAAAGTGGCAGCTTATTAAGGATCCGG TTGCATGTCCAAATGTTGTGAATAGAAGCAGACGAGTTGTTGTCTCTTTACTTTCTTCTT GTCTGATCTTGTTGTCTTCAGAATAGAAGCAGACGAGTTGTTGGAATCATGGTTGGTTCC AGACATTTGAGGGCATCAATTCCA



consensusID : consensus_10032#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 956
fasta sequence
                              [AAGGGAATTGCGTGGCGTGTCGACTTCCAAGTCTTCCGCCTTCGTTGGCCCCACCAGTCAGTGACCCAGTCAATCTCCGGCGATGGGGGCCGGAATGAGCAGCGGCCGGCGGCCGAGCTTCTACGGCGGCGGCGGCGGCGGCGGGGTCGGCCGGCCGAGAGGGATGCTGCCCCTGCTGGCGCTGCAGGTGCTGCTCGAGTACGGCCGCGCGGGCGCCAGCCGGCCCCCCGTGACGGCGGCGCTGCTCGCCGCCAACGCGCTGCTGTACCTCCGCCCAGGCTCCCTCGACGCGCTCCTCCCTTCGCTCAACCGCGTCGCCTTCAACCCTCACCTCATCATTCACGTAAGAGGAGCTTCCCCTCCACCAACCCTCCCCTTGTGTTTGGATTGATCCTGATTTCTCCCCTAGGAGAAGAAGAAGAAACAGAAAATTCACATAGGATTCTGGGCCATTTTTCCACTTCTTCGCCCATTCTAGTAGGGCTGTAGAATTGCGGCTGCGCTTCCTGGCGTGCTAATTGTGTCGAGGCTTTCGCTTTAGCTGATCAGTACATGGTAGATTATGCGAATTTCAGCTTGTGGGAATTTGGTAGCGGGATTACTGACTGCATAATGAGTTGGGAAATTTGGGAGTAGTATCCTTCTATTGGGAGTAATTGCTGGTAGTTTCGTGGTAATGTTTGTATTTGCAGAGGGGAACAGAGAATTGGAGGCTGGAGGAGCTGATGAAGAGAGAATTTTCTCCTCTTTGAGCCTGCTCTGCTACAAGCATTTACTCTAGTTGACAAAAAAAAAGATCATCCTATATGTAATTCTAGTTCAGTGAAATATACTTCCTCCAGTTAAAAACACATGTCATTTTGGACTTCAACACTGTTTCGTAATGTAGCTTTTGACCGATAATTTCTATTGCAAAACATTTGAATCCTCATAAAATGATTATATTAGTAAAGTTA]

[+] EMBL AK107821             [AAGGGAATTGCGTGGCGTGTCGACTTCCAAGTCTTCCGCCTTCGTTGGCCCCACCAGTCAGTGACCCAGTCAATCTCCGGCGATGGGGGCCGGAATGAGCAGCGGCCGGCGGCCGAGCTTCTACGGCGGCGGCGGCGGCGGCGGGGTCGGCCGGCCGAGAGGGATGCTGCCCCTGCTGGCGCTGCAGGTGCTGCTCGAGTACGGCCGCGCGGGCGCCAGCCGGCCCCCCGTGACGGCGGCGCTGCTCGCCGCCAACGCGCTGCTGTACCTCCGCCCAGGCTCCCTCGACGCGCTCCTCCCTTCGCTCAACCGCGTCGCCTTCAACCCTCACCTCATCATTCACGTAAGAGGAGCTTCCCCTCCACCAACCCTCCCCTTGTGTTTGGATTGATCCTGATTTCTCCCCTAGGAGAAGAAGAAGAAACAGAAAATTCACATAGGATTCTGGGCCATTTTTCCACTTCTTCGCCCATTCTAGTAGGGCTGTAGAATTGCGGCTGCGCTTCCTGGCGTGCTAATTGTGTCGAGGCTTTCGCTTTAGCTGATCAGTACATGGTAGATTATGCGAATTTCAGCTTGTGGGAATTTGGTAGCGGGATTACTGACTGCATAATGAGTTGGGAAATTTGGGAGTAGTATCCTTCTATTGGGAGTAATTGCTGGTAGTTTCGTGGTAATGTTTGTATTTGCAGAGGGGAACAGAGAATTGGAGGCTGGAGGAGCTGATGAAGAGAGAATTTTCTCCTCTTTGAGCCTGCTCTGCTACAAGCATTTACTCTAGTTGACAAAAAAAAAGATCATCCTATATGTAATTCTAGTTCAGTGAAATATACTTCCTCCAGTTAAAAACACATGTCATTTTGGACTTCAACACTGTTTCGTAATGTAGCTTTTGACCGATAATTTCTATTGCAAAACATTTGAATCCTCATAAAATGATTATATTAGTAAAGTTA]


>consensus_10032#1 AAGGGAATTGCGTGGCGTGTCGACTTCCAAGTCTTCCGCCTTCGTTGGCCCCACCAGTCA GTGACCCAGTCAATCTCCGGCGATGGGGGCCGGAATGAGCAGCGGCCGGCGGCCGAGCTT CTACGGCGGCGGCGGCGGCGGCGGGGTCGGCCGGCCGAGAGGGATGCTGCCCCTGCTGGC GCTGCAGGTGCTGCTCGAGTACGGCCGCGCGGGCGCCAGCCGGCCCCCCGTGACGGCGGC GCTGCTCGCCGCCAACGCGCTGCTGTACCTCCGCCCAGGCTCCCTCGACGCGCTCCTCCC TTCGCTCAACCGCGTCGCCTTCAACCCTCACCTCATCATTCACGTAAGAGGAGCTTCCCC TCCACCAACCCTCCCCTTGTGTTTGGATTGATCCTGATTTCTCCCCTAGGAGAAGAAGAA GAAACAGAAAATTCACATAGGATTCTGGGCCATTTTTCCACTTCTTCGCCCATTCTAGTA GGGCTGTAGAATTGCGGCTGCGCTTCCTGGCGTGCTAATTGTGTCGAGGCTTTCGCTTTA GCTGATCAGTACATGGTAGATTATGCGAATTTCAGCTTGTGGGAATTTGGTAGCGGGATT ACTGACTGCATAATGAGTTGGGAAATTTGGGAGTAGTATCCTTCTATTGGGAGTAATTGC TGGTAGTTTCGTGGTAATGTTTGTATTTGCAGAGGGGAACAGAGAATTGGAGGCTGGAGG AGCTGATGAAGAGAGAATTTTCTCCTCTTTGAGCCTGCTCTGCTACAAGCATTTACTCTA GTTGACAAAAAAAAAGATCATCCTATATGTAATTCTAGTTCAGTGAAATATACTTCCTCC AGTTAAAAACACATGTCATTTTGGACTTCAACACTGTTTCGTAATGTAGCTTTTGACCGA TAATTTCTATTGCAAAACATTTGAATCCTCATAAAATGATTATATTAGTAAAGTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10032#0      -------TTGCGTGGCGTGTCGACTTCCAAGTCTTCCGCCTTCGTTGGCCCCACCAGTCA 53
consensus_10032#1      AAGGGAATTGCGTGGCGTGTCGACTTCCAAGTCTTCCGCCTTCGTTGGCCCCACCAGTCA 60
                              *****************************************************

consensus_10032#0      GTGACCCAGTCAATCTCCGGCGATGGGGGCCGGAATGAGCAGCGGCCGGCGGCCGAGCTT 113
consensus_10032#1      GTGACCCAGTCAATCTCCGGCGATGGGGGCCGGAATGAGCAGCGGCCGGCGGCCGAGCTT 120
                       ************************************************************

consensus_10032#0      CTACGGCGGCGGCGGCGGCGGCGGGGTCGGCCGGCCGAGAGGGATGCTGCCCCTGCTGGC 173
consensus_10032#1      CTACGGCGGCGGCGGCGGCGGCGGGGTCGGCCGGCCGAGAGGGATGCTGCCCCTGCTGGC 180
                       ************************************************************

consensus_10032#0      GCTGCAGGTGCTGCTCGAGTACGGCCGCGCGGGCGCCAGCCGGCCCCCCGTGACGGCGGC 233
consensus_10032#1      GCTGCAGGTGCTGCTCGAGTACGGCCGCGCGGGCGCCAGCCGGCCCCCCGTGACGGCGGC 240
                       ************************************************************

consensus_10032#0      GCTGCTCGCCGCCAACGCGCTGCTGTACCTCCGCCCAGGCTCCCTCGACGCGCTCCTCCC 293
consensus_10032#1      GCTGCTCGCCGCCAACGCGCTGCTGTACCTCCGCCCAGGCTCCCTCGACGCGCTCCTCCC 300
                       ************************************************************

consensus_10032#0      TTCGCTCAACCGCGTCGCCTTCAACCCTCACCTCATCATTCACTACTGTGACCTGACACG 353
consensus_10032#1      TTCGCTCAACCGCGTCGCCTTCAACCCTCACCTCATCATTCAC----GTAA---GAGGAG 353
                       *******************************************    ** *   **   *

consensus_10032#0      CTTCTTCCTGTCGGCTTTCTACCACTTGAGCGAAACTCACTTCTTCTTCAACATGTCATC 413
consensus_10032#1      CTTC--CCCTCCACCAACCCTCCCCTTGTGTTTGGATTGATCCTGATT----------TC 401
                       ****  **   *  *   *  ** **** *      *   * **  **          **

consensus_10032#0      TCTCTTATGGAAGGGCATCCAGCTTGAAACATCCATGGGTAGTGTTGAGTT-TGCCTCTA 472
consensus_10032#1      TCCCCTAGGAGAAGAAGAAGAAACAGAAA-ATTCACATAGGATTCTGGGCCATTTTTCCA 460
                       ** * ** *  * *      *    **** ** **       *  ** *   *   ** *

consensus_10032#0      TGGCTGCTGCATTGCTTGGCATGTCACAAGGCATCACACTACTTTTGTCCAAAGGTTTAC 532
consensus_10032#1      CTTCT-TCGCCCATTCTAGTAGGGCTGTAGAATTGCGGCTGCGCTT-CCTGGCGTGCTAA 518
                          **   **      * * * * *   **   *    ** *  **  *    *   ** 

consensus_10032#0      TCCTGTTCGGCAATGATGAGGCTTATTATGATCAATATGCTGTTGGATTCTCTGGAGTAC 592
consensus_10032#1      TTGTGT----CGAGGCTTTCGCTTTAGCTGATCAGTACA-TGGTAGATTATGCGAATTTC 573
                       *  ***    * * * *   ****    ****** **   ** * **** *  * * * *

consensus_10032#0      TATTTGGTATGAAGGTCGTGCTGAATGCCTGGTCAGACGATTATGTCTTTCTTCATGGGG 652
consensus_10032#1      AGCTTG---------------TGGGAATTTGGTAGCGGGATTACTGACTGCATAATGAGT 618
                          ***               **      ****     *****     * * * *** * 

consensus_10032#0      TGGTTATTCCAGCAA-AATATGCTGCC--TGGGCTGAATTACTCCTCATTCAGGCTTTTA 709
consensus_10032#1      TGGGAAATTTGGGAGTAGTATCCTTCTATTGGGAGTAATTGCTGGTAGTTTCG--TGGTA 676
                       ***  * *   * *  * *** ** *   ****   **** **  *  **  *  *  **

consensus_10032#0      TTCCTGGGACATCTCTTATTGGCCATCTCGGTGGAATACTTGCTGGATTGGCCTACCTTT 769
consensus_10032#1      ATGTTTGTAT-----TTGCAGAGGGGAACAGAGAATTGGAGGCTGGAGGAGCTGATGAAG 731
                        *  * * *      **   *       * * * * *    ******   **  *     

consensus_10032#0      GGCTTAAGCGATCATTCTCTGGGCCAGACCCGCTTTCTCTTCTGATTTCAGG-AATTGGA 828
consensus_10032#1      AGAG-AATTTTCTCCTCTTTGAGCCTGCTCTGCTACAAGCATTTACTCTAGTTGACAAAA 790
                        *   **        *** ** *** *  * ***        * * *  **   *    *

consensus_10032#0      AAAGCTGTGAGATGGCCAGTAGGGTTTGTTCAGAAGCTTTTCAGGTCTGGCCGTCCTCAG 888
consensus_10032#1      AAAAAGATCATCCTATATGTAATTCTAGTTCAG-------TGAAATATA--CTTCCTCCA 841
                       ***    * *        ***    * ******       * *  * *   * *****  

consensus_10032#0      GGTTACACCCCAAGTCGAGGCAGAGTTGGCCGTGGTTCAGCAAGAGAGAATGGTCGAGGT 948
consensus_10032#1      GTTAAAAACACATGTCATTTTGGACTTCAACACTGTTTCGTAATGTAGCTT--TTGACCG 899
                       * * * * * ** ***      ** **   *   ***  * **   **  *  * **   

consensus_10032#0      ATATGGAGATGCTCAGCCTGCACTTATGACAACTCGCCGTCGACAGATATCTGTGAAATG 1008
consensus_10032#1      ATA----ATTTCTATTGCAAAACATTTGAATCCTCATAAAATGATTATATTAGTAAAGTT 955
                       ***      * **    *   ** * ***   ***           ****  ** ** * 

consensus_10032#0      TGCAGCAGTGCACGTGAGGACCATGCTTTTTCTCATAGACAGCACCTCCAAGCTGGGGGG 1068
consensus_10032#1      A----------------------------------------------------------- 956
                                                                                   

consensus_10032#0      AATGGGGAGCCATCGGTTGAGGAGATTCGCCGTAGGAGGCTCGAGAGATTTTCCAGATGA 1128
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      CGTGAACCATTGCTCTAGCAAATCAAGTTTTTTGTGGTACAGGAAGGAAGCTAATTCTCA 1188
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      TGAAAACTGAAAAATGCCCTTTCATGCCTTCCTGTGCTATTGCTACATAGCTTCAGAACA 1248
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      TTCTTGTGTCCAATGAATACTGAAGTTTTAACTTGCCTATTCAAGTTTATTGCTACTAAG 1308
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      TATTTAGCTCCATTCTTTAGGATCCCCTCATAATATATCTTTAGGTTGTCTCATCAGCTA 1368
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      TGCCTTCAAAGTATGTAATTATGTCCTTTTTTCTGGATAAATGGAGTATTACAGTAGTTG 1428
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      ACTTCGGCATATAAAAAAAAAGCTGTATGTCTGTCACCTAGTACATGTTTGGCCGTTATT 1488
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      TGCAGGCCTACAGAGCATTCCTTTTCACGGTTCTTTTAGCACTTGCAGTGTGTGAACGGA 1548
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      AATCTGCATCATCAACATCAGGTAGAAGTGGTGAGAATTCCTTTTCAAAGTGGCAGCTTA 1608
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      TTAAGGATCCGGTTGCATGTCCAAATGTTGTGAATAGAAGCAGACGAGTTGTTGTCTCTT 1668
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      TACTTTCTTCTTGTCTGATCTTGTTGTCTTCAGAATAGAAGCAGACGAGTTGTTGGAATC 1728
consensus_10032#1      ------------------------------------------------------------
                                                                                   

consensus_10032#0      ATGGTTGGTTCCAGACATTTGAGGGCATCAATTCCA 1764
consensus_10032#1      ------------------------------------
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)