These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1906 fasta sequence [AAGAATTTACAAATGAATCAGCATGCAGTCCTTGTGGCGATAAACACGCTGCGGTTCAAGCCTGTGTAACAAAATTTGAAAGATATATACAAAGGCCTAGTTTAGATGCTTCATGTTGTGTTTGTGGTATCTCAAACCTGGAGCCTTCCAATCAGTTGATAGAGTGCAGCAAGTGCTTTATCAAGGTGCACCAAGCTTGCTATGGTGTTCTAAAAGTTCCAAGAGGACAATGGTTCTGTAAGCCCTGCAAGATCAATACCCAGGACACAGTCTGTGTTCTGTGTGGTTATGGAGGTGGAGCTATGACAAGGGCATTGAAAGCCCAGAATATTCTCAAAAGCTTGCTGAGGGGTATTGCAACTGCAAAAAGATCAGATAAATATGTTTATTCATCAGGAAATGTGAACAGTGAGTGTACAAGCAAGTTACATGGGGAATATGTCAGGCATGATTCATTTAATGGACACAGATCAAGAAGCTTCAATGCTATATCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACATTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGCAGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCACAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAATGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCTTTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATAATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATGTTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGGTTTTTAGAGGCCGAAAGGGAGACTCATTTGGTGCTAATCGTAGCAGGAAACCAGAAGAGAAGTTTGGTGAGTGCAGTGTTTCCCAAGAACAGATCAATGCTTGGATACGCATAAATGGATCGAAATCTTGCATGAGAGGACAGAAGGAATATGTCCACTACAAGCAGTTAAAGGGATGGAAGCATTTGGTAGTGTACAAATCTAGCATTCATGGGCTTGGTCTCTACACATCGGAGTTTATTCCACGTGGCTCTATGGTTGTACAGTATGTTGGTGAAATTGTTGGGCAATGCGTTGCTGACAAAAGAGAGATTGAATACCAGTCCGGGAAACGGCAGCAATATA-AGAGTGCTTGTTACTTCTTCAAGA-TTGGAAAGGAACATATCATC-GATGCCACCC-GCAAGGGTGGGATCGCAAGATTCATC-AACCACTCTTGCCAACCAAACTGTG-TCG-C-A--AAAATAATCTCAGTAAGGA-A-CGAGAAGAAGGTAGTGTTC-TTCGCGGAAC-GCCACATAAATCCGGGGGAG-G-AAATTACCTACGATTATCACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCAGGAGATA-TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACA-TTGTAATGTGCGCACTGTATATATGAATAAACTGTA-GGGACTTAATCTGGCACTGATAATTTAGACATCCAAACTTAAATTTAGAATGGATTTAGAACTTAAAAAAAAAATCCTCTCCCAGTGCTCGGCAGCCAAATTGAAATGCTACTTCGCCCGCTGCNCGGAGAAGGCCATCTGACCTTGATAGAACCCGTAACTCGTTGATTTCCCGGGACATTTTGTCGTAGGTACTGGGAATTGTGCTCATGGAACAAGCTCATAATTCATAGAAAATTCATAAAAAAAAA] [+] EMBL AK112101 [AAGAATTTACAAATGAATCAGCATGCAGTCCTTGTGGCGATAAACACGCTGCGGTTCAAGCCTGTGTAACAAAATTTGAAAGATATATACAAAGGCCTAGTTTAGATGCTTCATGTTGTGTTTGTGGTATCTCAAACCTGGAGCCTTCCAATCAGTTGATAGAGTGCAGCAAGTGCTTTATCAAGGTGCACCAAGCTTGCTATGGTGTTCTAAAAGTTCCAAGAGGACAATGGTTCTGTAAGCCCTGCAAGATCAATACCCAGGACACAGTCTGTGTTCTGTGTGGTTATGGAGGTGGAGCTATGACAAGGGCATTGAAAGCCCAGAATATTCTCAAAAGCTTGCTGAGGGGTATTGCAACTGCAAAAAGATCAGATAAATATGTTTATTCATCAGGAAATGTGAACAGTGAGTGTACAAGCAAGTTACATGGGGAATATGTCAGGCATGATTCATTTAATGGACACAGATCAAGAAGCTTCAATGCTATATCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACATTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGCAGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCACAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAATGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCTTTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATAATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATGTTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGGTTTTTAGAGGCCGAAAGGGAGACTCATTTGGTGCTAATCGTAGCAGGAAACCAGAAGAGAAGTTTGGTGAGTGCAGTGTTTCCCAAGAACAGATCAATGCTTGGATACGCATAAATGGATCGAAATCTTGCATGAGAGGACAGAAGGAATATGTCCACTACAAGCAGTTAAAGGGATGGAAGCATTTGGTAGTGTACAAATCTAGCATTCATGGGCTTGGTCTCTACACATCGGAGTTTATTCCACGTGGCTCTATGGTTGTACAGTATGTTGGTGAAATTGTTGGGCAATGCGTTGCTGACAAAAGAGAGATTGAATACCAGTCCGGGAAACGGCAGCAATATA AGAGTGCTTGTTACTTCTTCAAGA TTGGAAAGGAACATATCATC GATGCCACCC GCAAGGGTGGGATCGCAAGATTCATC AACCACTCTTGCCAACCAAACTGTG TCG C A AAAATAATCTCAGTAAGGA A CGAGAAGAAGGTAGTGTTC TTCGCGGAAC GCCACATAAATCCGGGGGAG G AAATTACCTACGATTATCACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCAGGAGATA TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACA TTGTAATGTGCGCACTGTATATATGAATAAACTGTA GGGACTTAATCTGGCACTGATAATTTAGACATCCAAACTTAAATTTAGAATGG ] [-] EMBL CB648083 [ TATGCTTGATCCTAATCATGTTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGGTTTTTAGAGGCCGAAAGGGAGACTCATTTGGTGCTAATCGTAGCAGGAAACCAGAAGAGAAGTTTGGTGAGTGCAGTGTTTCCCAAGAACAGATCAATGCTTGGATACGCATAAATGGATCGAAATCTTGCATGAGAGGACAGAAGGAATATGTCCACTACAAGCAGTTAAAGGGATGGAAGCATTTGGTAGTGTACAAATCTAGCATTCATGGGCTTGGTCTCTACACATCGGAGTTTATTCCACGTGGCTCTATGGTTGTACAGTATGTTGGTGAAATTGTTGGGCAATGCGTTGCTGACAAAAGAGAGATTGAATACCAGTCCGGGAAACGGCAGCAATATA AGAGTGCTTGTTACTTCTTCAAGA TTGGAAAGGAACATATCATC GATGCCACCC GCAAGGGTGGGATCGCAAGATTCATC AACCACTCTTGCCAACCAAACTGTG TCG C A AAAATAATCTCAGTAAGGA A CGAGAAGAAGGTAGTGTTC TTCGCGGAAC GCCACATAAATCCGGGGGAG G AAATTACCTACGATTATCACTTCACCCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCAGGAGATA TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAACCA TTGTAATGTGCGCACTGTATATATGAATAAACTGTA GGGACT ] [+] EMBL BI805724 [ gtCTGACNAAAGAGAGATTGAATACCAGTCCGGGTAACGGCAGCAATATATAGAGTGCTTGNTACTTCTTCAAGATTTGGAAAGGAACATATCATCTGATGCCACCCTGCAAGGGTGGGATCGCAAGATTCATCTAACCACTCTTGCCAACC AACTGTT TCG CTATTANAATAATCTCAGTAAGGA A CGAGAAGAAGGTAGTGTTC TTCGCGGAAC GCCACATAAATCCGGGGGAG GTAAATTACCTACGATTATCACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCAGGAGATACTCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACA TTGTAATGTGCGCACTGTATATATGAATAAACTGTA GGGACTTAATCTGGCACTGATAATTTAGACATCC AACTTAAATTTAGAATGGATTTAGAACTTAAAAAAAAAA ] [+] EMBL AU058151 [ tgctggatCAGCCAAACTGTG TCG C A AAAATAATCTCAGTAAGGA A CGAGAAGAAGGTAGTGTTC TTCGCGGAAC G CACATAAATCCGGGGGAG G AAATTACCTACGATTATCACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCAGGAGATA TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACA TTGTAATGTGCGCACTGTATATATGAATAAACTGTA GGGACTTAATCTGGCACTGATAATTTAGACATCCAAACTTAAATTTAAAAa ] [+] EMBL OSC1161 [ tgctggatCAGCCAAACTGTG TCG C A AAAATAATCTCAGTAAGGA A CGAGAAGNAGGTAGTGTTC TTCGCGGAAC GCACCATAAATCCNGGGGAG G AAATTACCTACGATTATCACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTNCTTCTGTAGATCGAGAGGCTGCAGGAGATA TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACA TTGTAATGTGCGCACTGTATATATNAATAAACTGTA GGGACTTAATCTGGCACTGATAATTTAGACATCC ] [+] EMBL BM037952 [ ctAATCTGTGTTCGCC AT ATATTATTCTCAGTAAGGATACCGAGAAGAAGTTAGTGTTCTTTCGCGGTACNTCCACATAAATCCGGGGGAGNG AAATTACCTACGATTAGCACTTCAACCGAGAAGATGAA GGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCT CAGGAGATA TCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACACTTGTAATGTGCGCACTGTATATATGAATAAACTGTATGGGACTTAATCTGGCACTGATAATTTAGACATCCAAACTTAAATTTAGAATGGATTTAGAA TTAATTTAGACTTCCTCTCCCAGTGCTCGGCAGCCAAATTGAAATGCTACTTCGCCCGCTGCNCGGAGAAGGCCATCTGACCTTGATAGAACCCGTAACTCGTTGATTTCCCGGGACATTTTGTCGTAGGTACTGGGAATTGTGCTCATGGAACAAGCTCATAATTCATAGAAAATTCATAAAAAAAAA] consensusID : consensus_10036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [TCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACATTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGCAGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCACAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAATGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCTTTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATAATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATGTTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGNNNNNTNNNNNNNGNAAGGGNNNCNNNNTTGG] [+] EMBL CF196428 [TCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACATTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGCAGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCACAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAATGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCTTTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATAATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATGTTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGNNNNNTNNNNNNNGNAAGGGNNNCNNNNTTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10036#0 AAGAATTTACAAATGAATCAGCATGCAGTCCTTGTGGCGATAAACACGCTGCGGTTCAAG 60 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 CCTGTGTAACAAAATTTGAAAGATATATACAAAGGCCTAGTTTAGATGCTTCATGTTGTG 120 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 TTTGTGGTATCTCAAACCTGGAGCCTTCCAATCAGTTGATAGAGTGCAGCAAGTGCTTTA 180 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 TCAAGGTGCACCAAGCTTGCTATGGTGTTCTAAAAGTTCCAAGAGGACAATGGTTCTGTA 240 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 AGCCCTGCAAGATCAATACCCAGGACACAGTCTGTGTTCTGTGTGGTTATGGAGGTGGAG 300 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 CTATGACAAGGGCATTGAAAGCCCAGAATATTCTCAAAAGCTTGCTGAGGGGTATTGCAA 360 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 CTGCAAAAAGATCAGATAAATATGTTTATTCATCAGGAAATGTGAACAGTGAGTGTACAA 420 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 GCAAGTTACATGGGGAATATGTCAGGCATGATTCATTTAATGGACACAGATCAAGAAGCT 480 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 TCAATGCTATATCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACA 540 consensus_10036#1 -----------TCTTCTTTTGGTATAAAAGAAGCTTCAATAGGTAGTGCACGTGGGGACA 49 ************************************************* consensus_10036#0 TTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGC 600 consensus_10036#1 TTATCAGCAAGTCGTGGACCTCTAATCGCAATTCCAGTCTACTTGGTCCACGAACAAGGC 109 ************************************************************ consensus_10036#0 AGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCA 660 consensus_10036#1 AGTGGGTTCATGTGGTCTGTGGGTTGTGGACACCTGGTACAAAATGCCCAAATACAATCA 169 ************************************************************ consensus_10036#0 CAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAA 720 consensus_10036#1 CAATGAGTGCTTTTGATATATCAGGGGCTTCACCTGCCAAAAGAAATACCGAATGCTCAA 229 ************************************************************ consensus_10036#0 TGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCT 780 consensus_10036#1 TGTGTAACAGAACTGGGGGCTCATTTATGGGGTGTCGTGATGTTAATTGCTCAGTTCTCT 289 ************************************************************ consensus_10036#0 TTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATA 840 consensus_10036#1 TTCATCCTTGGTGTGCTCATCAGAGGGGTTTGTTGCAAAGTGAGCCAGAAGGCGAGCATA 349 ************************************************************ consensus_10036#0 ATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATG 900 consensus_10036#1 ATGAAAATGTTGGTTTTTATGGGAGATGCCTGGATCATGCTATGCTTGATCCTAATCATG 409 ************************************************************ consensus_10036#0 TTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGGTTT 960 consensus_10036#1 TTAATCCTAAGAAGGAATGCTTGAGGAGCAATGACTGGACATGTGCACGTACTGAGNNNN 469 ******************************************************** consensus_10036#0 TTAGAGGCCGAAAGGGAGACTCATTTGGTGCTAATCGTAGCAGGAAACCAGAAGAGAAGT 1020 consensus_10036#1 NTNNNNNNNGNAAGGGNNNCNNNNTTGG-------------------------------- 497 * * ***** * **** consensus_10036#0 TTGGTGAGTGCAGTGTTTCCCAAGAACAGATCAATGCTTGGATACGCATAAATGGATCGA 1080 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 AATCTTGCATGAGAGGACAGAAGGAATATGTCCACTACAAGCAGTTAAAGGGATGGAAGC 1140 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 ATTTGGTAGTGTACAAATCTAGCATTCATGGGCTTGGTCTCTACACATCGGAGTTTATTC 1200 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 CACGTGGCTCTATGGTTGTACAGTATGTTGGTGAAATTGTTGGGCAATGCGTTGCTGACA 1260 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 AAAGAGAGATTGAATACCAGTCCGGGAAACGGCAGCAATATAAGAGTGCTTGTTACTTCT 1320 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 TCAAGATTGGAAAGGAACATATCATCGATGCCACCCGCAAGGGTGGGATCGCAAGATTCA 1380 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 TCAACCACTCTTGCCAACCAAACTGTGTCGCAAAAATAATCTCAGTAAGGAACGAGAAGA 1440 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 AGGTAGTGTTCTTCGCGGAACGCCACATAAATCCGGGGGAGGAAATTACCTACGATTATC 1500 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 ACTTCAACCGAGAAGATGAAGGGCAAAGAATCCCCTGCTTCTGTAGATCGAGAGGCTGCA 1560 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 GGAGATATCTGAACTAAGATAGTGTACTTCGGTCGTATGTTTGTAGTGCTGTTTAAACAT 1620 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 TGTAATGTGCGCACTGTATATATGAATAAACTGTAGGGACTTAATCTGGCACTGATAATT 1680 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 TAGACATCCAAACTTAAATTTAGAATGGATTTAGAACTTAAAAAAAAAATCCTCTCCCAG 1740 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 TGCTCGGCAGCCAAATTGAAATGCTACTTCGCCCGCTGCNCGGAGAAGGCCATCTGACCT 1800 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 TGATAGAACCCGTAACTCGTTGATTTCCCGGGACATTTTGTCGTAGGTACTGGGAATTGT 1860 consensus_10036#1 ------------------------------------------------------------ consensus_10036#0 GCTCATGGAACAAGCTCATAATTCATAGAAAATTCATAAAAAAAAA 1906 consensus_10036#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||