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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1140 fasta sequence
[CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGACACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAAAAAAAAAAAAAGAGGCCACA]
[+] EMBL AK105013 [CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGACACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAAAAAAAAAAAAAGAGGCCACA]
[+] EMBL CB686008 [ ACGCCGCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAAC ]
[+] EMBL AU181721 [ TCCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCNCCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAAA ]
[+] EMBL AU172645 [ CCGAGGAGGTGCGGCAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAAA ]
[+] EMBL CF569136 [ CGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGA ]
consensusID : consensus_10038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 520 fasta sequence
[AAGCTCTACTTCACGNCCCCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGACGCGTCCGAGGAGGTGCGGCTAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCAGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTGTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAA]
[+] EMBL BQ906972 [AAGCTCTACTTCACGNCCCCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGTGCCGAGCTCGGCGGCGTCAAGACGCGTCCGAGGAGGTGCGGCTAGCTGGAGGAGCAGGCCGCCGCCGTGCTGAAGGCGGCACGCAGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGAAGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCGAGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTGTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAA]
[+] EMBL AA751912 [ agGAGG ACAGAAGGAGGAGGCCGTCAAGGCGCTCGACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCANGAAGGTGCTCCCATCCGCGTAATGGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTTTCTCCGTGTTTTATCCGTGTGTATACGCTGCTTGTCCTAAGAATGTAATTTCAGTGAACTTCTCGTGATAAGTATAAAATCAATGATCCTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10038#0 CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTAC 60
consensus_10038#1 ------------------------------------------------------------
consensus_10038#0 TATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACC 120
consensus_10038#1 ------------------------------------------------------------
consensus_10038#0 CTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGG 180
consensus_10038#1 ------------------------------------------------------------
consensus_10038#0 GAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAG 240
consensus_10038#1 ------------------------------------------------------------
consensus_10038#0 TCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCC 300
consensus_10038#1 ------------------------------------------------------------
consensus_10038#0 GGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAA 360
consensus_10038#1 ------------------------------------------------------------
consensus_10038#0 CGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAA 420
consensus_10038#1 ------------------------------------------------------------
consensus_10038#0 AAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGAT 480
consensus_10038#1 ------------------------------------------------------------
consensus_10038#0 CCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTG 540
consensus_10038#1 ------------------------------------------------------------
consensus_10038#0 GCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTT 600
consensus_10038#1 ------------------------------------------------------------
consensus_10038#0 CCTATCATTGTGACACGCCGC-TGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGT 659
consensus_10038#1 --AAGCTCTACTTCACGNCCCCTGGGCAAGTTCATGGACGAGCGCGACGCCAAGATCCGT 58
* * * **** * * **************************************
consensus_10038#0 GCCGAGCTCGGCGGCGTCAAGGACGCGTCCGAGGAGGTGCGGC-AGCTGGAGGAGCAGGC 718
consensus_10038#1 GCCGAGCTCGGCGGCGTCAAG-ACGCGTCCGAGGAGGTGCGGCTAGCTGGAGGAGCAGGC 117
********************* ********************* ****************
consensus_10038#0 CGCCGCCGTGCTGAAGGCGGCACGC-GCCGAGATCGCCGCGGCGCTCAACAAGATGAAGA 777
consensus_10038#1 CGCCGCCGTGCTGAAGGCGGCACGCAGCCGAGATCGCCGCGGCGCTCAACAAGATGAAGA 177
************************* **********************************
consensus_10038#0 AGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCG 837
consensus_10038#1 AGGAGACCACCCAGGAGCTGGAGGCGAAGCTGGACGAGGGGCGCCGCCGCGTCGAGGCCG 237
************************************************************
consensus_10038#0 AGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCG 897
consensus_10038#1 AGCTCGTGGAGGCGCTCGCCAACCTCGAGGCGCAGAAGGAGGAGGCCGTCAAGGCGCTCG 297
************************************************************
consensus_10038#0 ACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAAT 957
consensus_10038#1 ACGCCCAGATCGCCTCCCTCAGCGACGAGATCGTCAAGAAGGTGCTCCCATCCGCGTAAT 357
************************************************************
consensus_10038#0 GGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTT 1017
consensus_10038#1 GGCCGCCCCGCCGCCGGCCGTTCTTGCCTCCCAAACACCAACCATCTCTCGTAAAGATTT 417
************************************************************
consensus_10038#0 TCTCCGTGTTTTATCCGTGTGTATACGCTGCTTCTCCTAAGAATGTAATTTCAGTGAACT 1077
consensus_10038#1 TCTCCGTGTTTTATCCGTGTGTATACGCTGCTTGTCCTAAGAATGTAATTTCAGTGAACT 477
********************************* **************************
consensus_10038#0 TCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAAAAAAAAAAAAAGAGGCC 1137
consensus_10038#1 TCTCGTGATAAGTATAAAATCAATGATCCTTTTGCTAGAAAAA----------------- 520
*******************************************
consensus_10038#0 ACA 1140
consensus_10038#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||