These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1292 fasta sequence [AGCTTGCAAAGCCCAAACAGAACTTGTACTCTTCTAGCTGCTCTATCTGAACTTCTCATCAAACACACTGCAAACATTACGGTATCTCTTGCGTTGATGTCTTGGTGATCGACAGGATGCAAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGCGTCTTCGACACCGCCATGCTTTCCGACGGGTACCTGTATGAGCTGGATTCGCACTTGGATCGGCTGCTGCTATCTGCATCCAAAGCAAAGATCAGCTCCCCATTCTCCCGCGAAACACTTCGCGCCATTTTGGTGCAGATGACGGCTGCGTCCAAGTGCAGGAATGGCTCGATCAAGTACTGGCTCAGCGCCGGCCCCGGCGACTTCCTCCTCTCGCCAAAGGGCTGCACTGCGCCGGCGTTCTACGCCGTCGTCATCGCGTCCGCCGCCGCCGCCGCCGCCGGCGGGCACCCGCGGCTCAGGGAGGGCGTGAGGGCGATCACGTCGACGGTGCCGATGAAGGACCCGTTCTTCGCGGCGATGAAGAGCGTCAACTACCTGGCGAACGCGCTGGCCATGGCGGAGGCAGAGGAGCGCGGCGCGTACGCGTCGGTGTGGGTGGACGGCGACGGGGGCGTGGCGGAGGGCCCGATGATGAACGTGGCGTTCGTCACGGGCGGCGGCGACCTGGTGGTGCCGGCGTTCGACAGGGTCCTCAGCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGGACGCCGGCGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGTGCGCCGAGATGATGTTCGTCGGCAGCGGCCTCCCGTTGCTGCCCATCGTCGAATGGGACGGCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTATCTGACATGCTTTGCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGACGACGACTCATAGAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCATTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCACATTGACAGAATTGAATATAGACTTATTTTATAAAAAAAAAA] [+] EMBL C26776 [AGCTTGCAAAGCCCAAACAGAACTTGTACTCTTCTAGCTGCTCTATCTGAACTTCTCATCAAACACACTGCAAACATTACGGTATCTCTTGCGTTGATGTCTTGGTGATCGACAGGATGCAAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGGGTCTTCGACAACGCC ] [+] EMBL AK073635 [ CTAGCTGCTCTATCTGAACTTCTCATCAAACACACTGCAAACATTACGGTATCTCTTGCGTTGATGTCTTGGTGATCGACAGGATGCAAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGCGTCTTCGACACCGCCATGCTTTCCGACGGGTACCTGTATGAGCTGGATTCGCACTTGGATCGGCTGCTGCTATCTGCATCCAAAGCAAAGATCAGCTCCCCATTCTCCCGCGAAACACTTCGCGCCATTTTGGTGCAGATGACGGCTGCGTCCAAGTGCAGGAATGGCTCGATCAAGTACTGGCTCAGCGCCGGCCCCGGCGACTTCCTCCTCTCGCCAAAGGGCTGCACTGCGCCGGCGTTCTACGCCGTCGTCATCGCGTCCGCCGCCGCCGCCGCCGCCGGCGGGCACCCGCGGCTCAGGGAGGGCGTGAGGGCGATCACGTCGACGGTGCCGATGAAGGACCCGTTCTTCGCGGCGATGAAGAGCGTCAACTACCTGGCGAACGCGCTGGCCATGGCGGAGGCAGAGGAGCGCGGCGCGTACGCGTCGGTGTGGGTGGACGGCGACGGGGGCGTGGCGGAGGGCCCGATGATGAACGTGGCGTTCGTCACGGGCGGCGGCGACCTGGTGGTGCCGGCGTTCGACAGGGTCCTCAGCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGGACGCCGGCGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGTGCGCCGAGATGATGTTCGTCGGCAGCGGCCTCCCGTTGCTGCCCATCGTCGAATGGGACGGCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTATCTGACATGCTTTGCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGACGACGACTCATAGAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCATTTATGTGAACGAAA ] [+] EMBL AK104978 [ TGCAAACATTACGGTATCTCTTGCGTTGATGTCTTGGTGATCGACAGGATGCAAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGCGTCTTCGACACCGCCATGCTTTCCGACGGGTACCTGTATGAGCTGGATTCGCACTTGGATCGGCTGCTGCTATCTGCATCCAAAGCAAAGATCAGCTCCCCATTCTCCCGCGAAACACTTCGCGCCATTTTGGTGCAGATGACGGCTGCGTCCAAGTGCAGGAATGGCTCGATCAAGTACTGGCTCAGCGCCGGCCCCGGCGACTTCCTCCTCTCGCCAAAGGGCTGCACTGCGCCGGCGTTCTACGCCGTCGTCATCGCGTCCGCCACCGCCGCCGCCGCCGGCGGGCACCCGCGGCTCAGGGAGGGCGTGAGGGCGATCACGTCGACGGTGCCGATGAAGGACCCGTTCTTCGCGGCGATGAAGAGCGTCAACTACCTGGCGAACGCGCTGGCCATGGCGGAGGCAGAGGAGCGCGGCGCGTACGCGTCGGTGTGGGTGGACGGCGACGGGGGCGTGGCGGAGGGCCCGATGATGAACGTGGCGTTCGTCACGGGCGGCGGCGACCTGGTGGTGCCGGCGTTCGACAGGGTCCTCAGCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGGACGCCGGCGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGTGCGCCGAGATGATGTTCGTCGGCAGCGGCCTCCCGTTGCTGCCCATCGTCGAATGGGACGGCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTATCTGACATGCTTTGCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGACGACGACTAATAGAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCATTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCACATT ] [+] EMBL C28124 [ ATGTCTTGGTGATCGACAGGATGCAAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGCGTC ] [+] EMBL AU181662 [ AACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGCGTCTTCGACACCGCCATGCTTTCCGACGGGTACCTGTATGAGCTGGATTCGCACTTGGATCGGCTGCTGCTATCTGCATCCAAAGCAAAGATCAGCTCCCCATTCTCCCGCGAAACACTTCGCGCCATTTTGGTGCAGATGACGGCTGCGTCCAAGTGCAGGAATGGCTCGATCAAGTACTGGCTCAGCGCCGGCCCCGGCGACTTCCTCCTCTCGCCAAAGGGCTGCACTGCGCCGGCG ] [+] EMBL AU166726 [ GCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGGACGCCGGCGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGTGCGCCGAGATGATGTTCGTCGGCAGCGGCCTCCCGTTGCTGCCCATCGTCGAATGGGACGGCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTATCTGACATGCTTTGCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGACGACGACTCATAGAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCATTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCACATTGACAGAATTGAATATAGACTTATTTTATAAAAAAAAAA] consensusID : consensus_10043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [GGCCTCCCGTTGCTGCCCATTGTNGAATGGGACGGCCANCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCNTGCCCTATTTGACATGCTTTGCGAAGACATCAAGGCCGGTNTNGACAGAGTACTTGTTCCTTATGATCAANCGAGCTAGACGNCGACTCATANAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCNTTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCCCNTTGNCNGAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU181832 [GGCCTCCCGTTGCTGCCCATTGTNGAATGGGACGGCCANCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCNTGCCCTATTTGACATGCTTTGCGAAGACATCAAGGCCGGTNTNGACAGAGTACTTGTTCCTTATGATCAANCGAGCTAGACGNCGACTCATANAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCNTTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCCCNTTGNCNGAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10043#0 AGCTTGCAAAGCCCAAACAGAACTTGTACTCTTCTAGCTGCTCTATCTGAACTTCTCATC 60 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 AAACACACTGCAAACATTACGGTATCTCTTGCGTTGATGTCTTGGTGATCGACAGGATGC 120 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 AAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGC 180 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 TTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCG 240 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 TCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCC 300 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 ACAGAGGCCATGGCGTCTTCGACACCGCCATGCTTTCCGACGGGTACCTGTATGAGCTGG 360 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 ATTCGCACTTGGATCGGCTGCTGCTATCTGCATCCAAAGCAAAGATCAGCTCCCCATTCT 420 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 CCCGCGAAACACTTCGCGCCATTTTGGTGCAGATGACGGCTGCGTCCAAGTGCAGGAATG 480 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 GCTCGATCAAGTACTGGCTCAGCGCCGGCCCCGGCGACTTCCTCCTCTCGCCAAAGGGCT 540 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 GCACTGCGCCGGCGTTCTACGCCGTCGTCATCGCGTCCGCCGCCGCCGCCGCCGCCGGCG 600 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 GGCACCCGCGGCTCAGGGAGGGCGTGAGGGCGATCACGTCGACGGTGCCGATGAAGGACC 660 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 CGTTCTTCGCGGCGATGAAGAGCGTCAACTACCTGGCGAACGCGCTGGCCATGGCGGAGG 720 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 CAGAGGAGCGCGGCGCGTACGCGTCGGTGTGGGTGGACGGCGACGGGGGCGTGGCGGAGG 780 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 GCCCGATGATGAACGTGGCGTTCGTCACGGGCGGCGGCGACCTGGTGGTGCCGGCGTTCG 840 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 ACAGGGTCCTCAGCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGG 900 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 ACGCCGGCGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGT 960 consensus_10043#1 ------------------------------------------------------------ consensus_10043#0 GCGCCGAGATGATGTTCGTCGGCAGCGGCCTCCCGTTGCTGCCCATCGTCGAATGGGACG 1020 consensus_10043#1 --------------------------GGCCTCCCGTTGCTGCCCATTGTNGAATGGGACG 34 ******************** ** ********** consensus_10043#0 GCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTATCTGACATGCTTT 1080 consensus_10043#1 GCCANCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCNTGCCCTATTTGACATGCTTT 94 **** ********************************** ******** *********** consensus_10043#0 GCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGA 1140 consensus_10043#1 GCGAAGACATCAAGGCCGGTNTNGACAGAGTACTTGTTCCTTATGATCAANCGAGCTAGA 154 ******************** * *************************** ********* consensus_10043#0 CGACGACTCATAGAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACT 1200 consensus_10043#1 CGNCGACTCATANAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACT 214 ** ********* *********************************************** consensus_10043#0 TCCATTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCACATTGACAGA 1260 consensus_10043#1 TCCNTTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCCCNTTGNCNGA 274 *** ********************************************* * *** * ** consensus_10043#0 ATTGAATATAGACTTATTTTATAAAAAAAAAA 1292 consensus_10043#1 AAAAAAAAAAAA--------AAAAAAAAAAAA 298 * ** * * * * ********** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||