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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1292 fasta sequence
[AGCTTGCAAAGCCCAAACAGAACTTGTACTCTTCTAGCTGCTCTATCTGAACTTCTCATCAAACACACTGCAAACATTACGGTATCTCTTGCGTTGATGTCTTGGTGATCGACAGGATGCAAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGCGTCTTCGACACCGCCATGCTTTCCGACGGGTACCTGTATGAGCTGGATTCGCACTTGGATCGGCTGCTGCTATCTGCATCCAAAGCAAAGATCAGCTCCCCATTCTCCCGCGAAACACTTCGCGCCATTTTGGTGCAGATGACGGCTGCGTCCAAGTGCAGGAATGGCTCGATCAAGTACTGGCTCAGCGCCGGCCCCGGCGACTTCCTCCTCTCGCCAAAGGGCTGCACTGCGCCGGCGTTCTACGCCGTCGTCATCGCGTCCGCCGCCGCCGCCGCCGCCGGCGGGCACCCGCGGCTCAGGGAGGGCGTGAGGGCGATCACGTCGACGGTGCCGATGAAGGACCCGTTCTTCGCGGCGATGAAGAGCGTCAACTACCTGGCGAACGCGCTGGCCATGGCGGAGGCAGAGGAGCGCGGCGCGTACGCGTCGGTGTGGGTGGACGGCGACGGGGGCGTGGCGGAGGGCCCGATGATGAACGTGGCGTTCGTCACGGGCGGCGGCGACCTGGTGGTGCCGGCGTTCGACAGGGTCCTCAGCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGGACGCCGGCGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGTGCGCCGAGATGATGTTCGTCGGCAGCGGCCTCCCGTTGCTGCCCATCGTCGAATGGGACGGCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTATCTGACATGCTTTGCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGACGACGACTCATAGAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCATTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCACATTGACAGAATTGAATATAGACTTATTTTATAAAAAAAAAA]
[+] EMBL C26776 [AGCTTGCAAAGCCCAAACAGAACTTGTACTCTTCTAGCTGCTCTATCTGAACTTCTCATCAAACACACTGCAAACATTACGGTATCTCTTGCGTTGATGTCTTGGTGATCGACAGGATGCAAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGGGTCTTCGACAACGCC ]
[+] EMBL AK073635 [ CTAGCTGCTCTATCTGAACTTCTCATCAAACACACTGCAAACATTACGGTATCTCTTGCGTTGATGTCTTGGTGATCGACAGGATGCAAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGCGTCTTCGACACCGCCATGCTTTCCGACGGGTACCTGTATGAGCTGGATTCGCACTTGGATCGGCTGCTGCTATCTGCATCCAAAGCAAAGATCAGCTCCCCATTCTCCCGCGAAACACTTCGCGCCATTTTGGTGCAGATGACGGCTGCGTCCAAGTGCAGGAATGGCTCGATCAAGTACTGGCTCAGCGCCGGCCCCGGCGACTTCCTCCTCTCGCCAAAGGGCTGCACTGCGCCGGCGTTCTACGCCGTCGTCATCGCGTCCGCCGCCGCCGCCGCCGCCGGCGGGCACCCGCGGCTCAGGGAGGGCGTGAGGGCGATCACGTCGACGGTGCCGATGAAGGACCCGTTCTTCGCGGCGATGAAGAGCGTCAACTACCTGGCGAACGCGCTGGCCATGGCGGAGGCAGAGGAGCGCGGCGCGTACGCGTCGGTGTGGGTGGACGGCGACGGGGGCGTGGCGGAGGGCCCGATGATGAACGTGGCGTTCGTCACGGGCGGCGGCGACCTGGTGGTGCCGGCGTTCGACAGGGTCCTCAGCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGGACGCCGGCGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGTGCGCCGAGATGATGTTCGTCGGCAGCGGCCTCCCGTTGCTGCCCATCGTCGAATGGGACGGCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTATCTGACATGCTTTGCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGACGACGACTCATAGAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCATTTATGTGAACGAAA ]
[+] EMBL AK104978 [ TGCAAACATTACGGTATCTCTTGCGTTGATGTCTTGGTGATCGACAGGATGCAAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGCGTCTTCGACACCGCCATGCTTTCCGACGGGTACCTGTATGAGCTGGATTCGCACTTGGATCGGCTGCTGCTATCTGCATCCAAAGCAAAGATCAGCTCCCCATTCTCCCGCGAAACACTTCGCGCCATTTTGGTGCAGATGACGGCTGCGTCCAAGTGCAGGAATGGCTCGATCAAGTACTGGCTCAGCGCCGGCCCCGGCGACTTCCTCCTCTCGCCAAAGGGCTGCACTGCGCCGGCGTTCTACGCCGTCGTCATCGCGTCCGCCACCGCCGCCGCCGCCGGCGGGCACCCGCGGCTCAGGGAGGGCGTGAGGGCGATCACGTCGACGGTGCCGATGAAGGACCCGTTCTTCGCGGCGATGAAGAGCGTCAACTACCTGGCGAACGCGCTGGCCATGGCGGAGGCAGAGGAGCGCGGCGCGTACGCGTCGGTGTGGGTGGACGGCGACGGGGGCGTGGCGGAGGGCCCGATGATGAACGTGGCGTTCGTCACGGGCGGCGGCGACCTGGTGGTGCCGGCGTTCGACAGGGTCCTCAGCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGGACGCCGGCGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGTGCGCCGAGATGATGTTCGTCGGCAGCGGCCTCCCGTTGCTGCCCATCGTCGAATGGGACGGCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTATCTGACATGCTTTGCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGACGACGACTAATAGAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCATTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCACATT ]
[+] EMBL C28124 [ ATGTCTTGGTGATCGACAGGATGCAAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGCGTC ]
[+] EMBL AU181662 [ AACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGCTTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCGTCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCCACAGAGGCCATGGCGTCTTCGACACCGCCATGCTTTCCGACGGGTACCTGTATGAGCTGGATTCGCACTTGGATCGGCTGCTGCTATCTGCATCCAAAGCAAAGATCAGCTCCCCATTCTCCCGCGAAACACTTCGCGCCATTTTGGTGCAGATGACGGCTGCGTCCAAGTGCAGGAATGGCTCGATCAAGTACTGGCTCAGCGCCGGCCCCGGCGACTTCCTCCTCTCGCCAAAGGGCTGCACTGCGCCGGCG ]
[+] EMBL AU166726 [ GCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGGACGCCGGCGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGTGCGCCGAGATGATGTTCGTCGGCAGCGGCCTCCCGTTGCTGCCCATCGTCGAATGGGACGGCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTATCTGACATGCTTTGCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGACGACGACTCATAGAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCATTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCACATTGACAGAATTGAATATAGACTTATTTTATAAAAAAAAAA]
consensusID : consensus_10043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence
[GGCCTCCCGTTGCTGCCCATTGTNGAATGGGACGGCCANCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCNTGCCCTATTTGACATGCTTTGCGAAGACATCAAGGCCGGTNTNGACAGAGTACTTGTTCCTTATGATCAANCGAGCTAGACGNCGACTCATANAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCNTTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCCCNTTGNCNGAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU181832 [GGCCTCCCGTTGCTGCCCATTGTNGAATGGGACGGCCANCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCNTGCCCTATTTGACATGCTTTGCGAAGACATCAAGGCCGGTNTNGACAGAGTACTTGTTCCTTATGATCAANCGAGCTAGACGNCGACTCATANAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACTTCCNTTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCCCNTTGNCNGAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10043#0 AGCTTGCAAAGCCCAAACAGAACTTGTACTCTTCTAGCTGCTCTATCTGAACTTCTCATC 60
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 AAACACACTGCAAACATTACGGTATCTCTTGCGTTGATGTCTTGGTGATCGACAGGATGC 120
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 AAGGGGAACACCATGACCATGTCCCTGTCTACGAGTCAGGCACCGAGGTGTTCCAAAAGC 180
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 TTCAGGAGAAATGGAATTCCACCAAGCACAAGCGATACCGCGCGATGTACTCCAGCGTCG 240
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 TCGGCGGAATCATCCTCGATCCATCGATGATGGTCATCCCCATCGACGATCACATGGTCC 300
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 ACAGAGGCCATGGCGTCTTCGACACCGCCATGCTTTCCGACGGGTACCTGTATGAGCTGG 360
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 ATTCGCACTTGGATCGGCTGCTGCTATCTGCATCCAAAGCAAAGATCAGCTCCCCATTCT 420
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 CCCGCGAAACACTTCGCGCCATTTTGGTGCAGATGACGGCTGCGTCCAAGTGCAGGAATG 480
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 GCTCGATCAAGTACTGGCTCAGCGCCGGCCCCGGCGACTTCCTCCTCTCGCCAAAGGGCT 540
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 GCACTGCGCCGGCGTTCTACGCCGTCGTCATCGCGTCCGCCGCCGCCGCCGCCGCCGGCG 600
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 GGCACCCGCGGCTCAGGGAGGGCGTGAGGGCGATCACGTCGACGGTGCCGATGAAGGACC 660
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 CGTTCTTCGCGGCGATGAAGAGCGTCAACTACCTGGCGAACGCGCTGGCCATGGCGGAGG 720
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 CAGAGGAGCGCGGCGCGTACGCGTCGGTGTGGGTGGACGGCGACGGGGGCGTGGCGGAGG 780
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 GCCCGATGATGAACGTGGCGTTCGTCACGGGCGGCGGCGACCTGGTGGTGCCGGCGTTCG 840
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 ACAGGGTCCTCAGCGGGTGCACGGCGAGGCGGCTGCTCGCGCTGGCGCCCAGGCTGGTGG 900
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 ACGCCGGCGTGCTCAGGAGCGTCGGCGCGGCGAGGATCTCCGCCGCCGACGCGAGGAGGT 960
consensus_10043#1 ------------------------------------------------------------
consensus_10043#0 GCGCCGAGATGATGTTCGTCGGCAGCGGCCTCCCGTTGCTGCCCATCGTCGAATGGGACG 1020
consensus_10043#1 --------------------------GGCCTCCCGTTGCTGCCCATTGTNGAATGGGACG 34
******************** ** **********
consensus_10043#0 GCCAGCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCTTGCCCTATCTGACATGCTTT 1080
consensus_10043#1 GCCANCCGGTTGGCGATGGTCAAGTGGGGAAAATTGCCCNTGCCCTATTTGACATGCTTT 94
**** ********************************** ******** ***********
consensus_10043#0 GCGAAGACATCAAGGCCGGTCTCGACAGAGTACTTGTTCCTTATGATCAAGCGAGCTAGA 1140
consensus_10043#1 GCGAAGACATCAAGGCCGGTNTNGACAGAGTACTTGTTCCTTATGATCAANCGAGCTAGA 154
******************** * *************************** *********
consensus_10043#0 CGACGACTCATAGAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACT 1200
consensus_10043#1 CGNCGACTCATANAGCTTTGGAAGATCAACTTTGTATAATAATAATAATAATGTAATACT 214
** ********* ***********************************************
consensus_10043#0 TCCATTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCACATTGACAGA 1260
consensus_10043#1 TCCNTTTATGTGAACGAAATTTTTCCGTATTATGAGTGGAGGATCCGTCCCNTTGNCNGA 274
*** ********************************************* * *** * **
consensus_10043#0 ATTGAATATAGACTTATTTTATAAAAAAAAAA 1292
consensus_10043#1 AAAAAAAAAAAA--------AAAAAAAAAAAA 298
* ** * * * * **********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||